Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,448,541 |
+C |
intergenic (+46/‑92) |
ytfQ → / → ytfR |
putative LACI‑type transcriptional regulator/YtfR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,448,541 | 1 | . | C | 99.5%
| 566.1
/ ‑3.8
| 189 | intergenic (+46/‑92) | ytfQ/ytfR | putative LACI‑type transcriptional regulator/YtfR |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (125/63); total (126/63) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.21e-01 |
Only 100 of 215 total aligned reads displayed.
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CG‑‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > NC_000913/4448450‑4448623
|
tACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑Cgc > 2:147019/1‑92 (MQ=255)
tACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑Cgc > 2:2490268/1‑92 (MQ=255)
agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGc > 1:3948877/1‑93 (MQ=37)
agaaTGAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGc < 2:4909448/93‑1 (MQ=25)
gaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCg > 2:4396139/1‑93 (MQ=37)
aaTTGGAGAAGAAGAAAAATATGGGGTATGGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGAAAAGGCGCT‑‑CGC‑GCCGCACCCGGCGa < 2:2451106/93‑1 (MQ=25)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGa > 2:2813116/1‑93 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGa > 1:601408/1‑93 (MQ=37)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATTCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGAt > 2:3976208/1‑93 (MQ=37)
ttAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATg > 1:1123993/1‑93 (MQ=37)
ttAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATg > 2:1022099/1‑93 (MQ=37)
ttAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATg > 1:4833749/1‑93 (MQ=37)
ttAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATg > 1:4351579/1‑93 (MQ=37)
tAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATgg > 1:2541668/1‑93 (MQ=37)
agagAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGt < 2:201272/93‑1 (MQ=37)
gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTg > 1:21159/1‑93 (MQ=37)
gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCAGCCGGCGATGGTg < 1:1885010/93‑1 (MQ=37)
ggaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGc > 2:6207438/2‑93 (MQ=37)
agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGc > 2:5188080/1‑93 (MQ=37)
agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGc < 1:5952924/93‑1 (MQ=37)
gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCa > 2:4251750/1‑93 (MQ=37)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACt > 2:2174645/1‑93 (MQ=37)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACt > 1:6286603/1‑93 (MQ=37)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACt < 2:3989520/93‑1 (MQ=37)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTg > 1:4969426/1‑93 (MQ=37)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAg < 2:6281198/93‑1 (MQ=37)
aaaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGc > 1:4217944/1‑93 (MQ=37)
aaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGcc < 2:828969/93‑1 (MQ=37)
aaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCt > 2:2612567/1‑93 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGa < 1:4046870/93‑1 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 1:5923302/1‑93 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 2:3135143/1‑93 (MQ=37)
tgtGGGTTATTGAGGGTGGCGACGCCATGCCCCGATTCGTGGGCCGGAAAGGGCCCC‑‑CGC‑GCCTCACCGGGCGATGGTGCACTGAAGCCTGAt < 2:3418033/91‑1 (MQ=255)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 1:2132201/1‑93 (MQ=37)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGc > 2:782849/1‑93 (MQ=25)
ggggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCg > 2:114950/1‑93 (MQ=25)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGa > 1:2801831/1‑93 (MQ=25)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGa > 2:3688960/1‑93 (MQ=25)
ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc < 2:4980187/93‑1 (MQ=25)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg < 2:2697703/93‑1 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 2:5694857/1‑93 (MQ=25)
aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt > 2:389217/1‑93 (MQ=25)
ttGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 1:2296548/1‑93 (MQ=25)
tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 2:4892547/93‑1 (MQ=25)
tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 2:6431171/93‑1 (MQ=25)
gggggTTCCTATCCCGGATGCCGATTCGTAGGCCGGATAAGCCGCTCGCG‑‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc < 2:1660477/91‑1 (MQ=21)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc > 1:5743711/1‑93 (MQ=25)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc > 1:3532158/1‑93 (MQ=25)
gAGGGTGGCTATGCCTGAGGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc < 2:189012/93‑1 (MQ=21)
ggggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAGGGCCCC‑‑CGCCC‑CCCACCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAcc < 2:5532166/92‑1 (MQ=255)
ggggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAcc < 2:4654580/92‑1 (MQ=25)
aGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAcc > 2:853710/1‑93 (MQ=25)
ggTTGGTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgc < 2:2210529/93‑1 (MQ=25)
ggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgc > 1:3395770/1‑93 (MQ=25)
gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg > 2:2674362/1‑93 (MQ=25)
ttGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGt < 1:6452758/93‑1 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTc < 1:2709823/93‑1 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTc > 1:4144127/1‑93 (MQ=25)
tcTATGCTTGATGCCGATTCGTAGGCGGGATAGGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 2:2263385/92‑1 (MQ=21)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt > 1:1307471/1‑93 (MQ=25)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa > 2:4820579/1‑93 (MQ=25)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa > 2:5116920/1‑93 (MQ=25)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc < 2:3682415/93‑1 (MQ=25)
agCCGGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc < 1:5196629/92‑1 (MQ=21)
gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCACG‑‑C‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa > 2:3341433/1‑93 (MQ=18)
gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa < 1:1288586/93‑1 (MQ=21)
gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa > 2:2661534/1‑93 (MQ=21)
gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa > 1:5378809/1‑93 (MQ=21)
ccTGTTGCAGATTGGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCAGCTATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt < 2:4309800/93‑1 (MQ=17)
ccTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt > 2:718301/1‑93 (MQ=21)
cTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg > 2:4138381/1‑93 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc < 1:843276/93‑1 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:658659/1‑93 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:1085429/1‑93 (MQ=21)
tGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa < 1:2477409/93‑1 (MQ=21)
cgtttCGTGGCCCGGATAGGGCGCT‑‑CGCCC‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg < 2:1319705/90‑1 (MQ=18)
cGATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg < 1:997866/93‑1 (MQ=18)
gATTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg < 1:3728083/93‑1 (MQ=21)
gATTCGTAGGCCGGATAAGGCGCG‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg > 2:5200831/1‑93 (MQ=18)
aTTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg > 2:4743218/1‑93 (MQ=21)
aTTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg > 2:591736/1‑93 (MQ=21)
aTTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg > 2:5310222/1‑93 (MQ=21)
aTTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg < 2:5738406/93‑1 (MQ=21)
aTTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg > 2:5878924/1‑93 (MQ=21)
aTTCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCGTACCGCGTCTTATCATGCCTACTggg > 1:5592522/1‑93 (MQ=18)
ttCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa < 1:1977607/93‑1 (MQ=21)
ttCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 2:6139063/1‑93 (MQ=21)
ttCGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTCAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgggg > 1:4585171/1‑92 (MQ=18)
cGTAGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc < 2:1836391/93‑1 (MQ=18)
aGGCCGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACg > 2:5147350/1‑93 (MQ=21)
cagATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt < 1:1729252/91‑1 (MQ=21)
cGGATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt > 1:3090651/1‑93 (MQ=21)
gATAAGGCTCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac < 2:6118868/93‑1 (MQ=25)
gATAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac < 2:429154/93‑1 (MQ=25)
aTAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTaca < 1:3046655/93‑1 (MQ=25)
tAAGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac > 1:152636/1‑93 (MQ=25)
aGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg > 1:1196442/1‑93 (MQ=25)
aGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg < 1:2082095/93‑1 (MQ=25)
aGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg > 1:2899671/1‑93 (MQ=25)
aGGCGCT‑‑CGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg < 1:598711/93‑1 (MQ=25)
|
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CG‑‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > NC_000913/4448450‑4448623
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGGCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448448‑4448634
|
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CG < SRR4302537.2516747/94‑1 (MQ=60)
CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCTGGATAAGGCGCT‑‑CGcgccg > SRR4302537.4551482/1‑89 (MQ=60)
CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccg > SRR4302537.4791324/1‑89 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgca > SRR4302537.1868271/1‑87 (MQ=60)
AAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcat > SRR4302537.1690807/1‑86 (MQ=60)
AAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatc < SRR4302537.4851954/94‑10 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatcc < SRR4302537.2477629/94‑11 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatcc < SRR4302537.525288/94‑11 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatcc > SRR4302537.1833130/1‑84 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG < SRR4302537.549372/94‑1 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG < SRR4302537.2504264/94‑1 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG > SRR4302537.1899928/1‑94 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG < SRR4302537.5168887/94‑1 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG > SRR4302537.2602276/1‑94 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG > SRR4302537.3796691/1‑94 (MQ=60)
GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGG < SRR4302537.2295181/94‑1 (MQ=60)
AAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGC < SRR4302537.5968371/94‑1 (MQ=60)
AAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGC > SRR4302537.3976495/1‑94 (MQ=60)
AGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCG > SRR4302537.1970027/1‑94 (MQ=60)
GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGA > SRR4302537.605521/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATG > SRR4302537.4867126/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATG > SRR4302537.4381721/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATG > SRR4302537.1131788/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATG > SRR4302537.741897/1‑94 (MQ=60)
TTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGG > SRR4302537.2559486/1‑94 (MQ=60)
TAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGT > SRR4302537.4882337/1‑94 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTG > SRR4302537.21323/1‑94 (MQ=60)
GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGC > SRR4302537.2153590/1‑94 (MQ=60)
GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCAGCCGGCGATGGTGC < SRR4302537.1898119/94‑1 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCA > SRR4302537.2146642/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCA > SRR4302537.1309995/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCA < SRR4302537.5993793/94‑1 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACT < SRR4302537.2051910/94‑1 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACT > SRR4302537.6329700/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACT > SRR4302537.2753115/1‑94 (MQ=60)
AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTG > SRR4302537.1207691/1‑94 (MQ=60)
AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTG > SRR4302537.5003675/1‑94 (MQ=60)
AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAG > SRR4302537.2622130/1‑94 (MQ=60)
AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAG > SRR4302537.5264802/1‑94 (MQ=60)
GAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGC > SRR4302537.4247344/1‑94 (MQ=60)
AAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTG < SRR4302537.6325804/94‑1 (MQ=60)
AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGA > SRR4302537.5963944/1‑94 (MQ=60)
ATATGGGGTATTGAGTGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAT > SRR4302537.5850194/1‑94 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAT > SRR4302537.2147207/1‑94 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAT < SRR4302537.4075168/94‑1 (MQ=60)
GGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGA > SRR4302537.2821419/1‑94 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAC < SRR4302537.4376093/94‑1 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACG < SRR4302537.2123127/94‑1 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302537.2409851/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302537.152650/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302537.6054553/1‑94 (MQ=60)
ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT > SRR4302537.2312758/1‑94 (MQ=60)
ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT > SRR4302537.4786524/1‑94 (MQ=60)
TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC > SRR4302537.5783037/1‑94 (MQ=60)
TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC > SRR4302537.3557120/1‑94 (MQ=60)
TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC < SRR4302537.3085217/94‑1 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC > SRR4302537.2589049/1‑94 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC > SRR4302537.4484883/1‑94 (MQ=60)
GGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGC > SRR4302537.3419821/1‑94 (MQ=60)
GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGT > SRR4302537.3020837/1‑94 (MQ=60)
TTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTC < SRR4302537.6496507/94‑1 (MQ=60)
TTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTC > SRR4302537.4173037/1‑94 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT < SRR4302537.2728748/94‑1 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT > SRR4302537.1316575/1‑94 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302537.3627546/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302537.3951584/94‑1 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA < SRR4302537.402188/94‑1 (MQ=60)
TATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAT > SRR4302537.923726/1‑94 (MQ=60)
ATGCCTGATGCCGATTCGTAGGCCGGATAAGCCCCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC < SRR4302537.5046496/94‑1 (MQ=60)
agccgGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA < SRR4302537.5232348/89‑1 (MQ=60)
TGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA > SRR4302537.642957/1‑94 (MQ=60)
TGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA < SRR4302537.5997153/94‑1 (MQ=60)
TGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA > SRR4302537.5415599/1‑94 (MQ=60)
GCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT < SRR4302537.1297550/94‑1 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302537.3395343/1‑94 (MQ=60)
CTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC > SRR4302537.1576540/1‑94 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC < SRR4302537.849053/94‑1 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC > SRR4302537.3516473/1‑94 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAACGCGTCTTATCATGCC > SRR4302537.4179340/1‑94 (MQ=60)
ATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA > SRR4302537.1148752/1‑94 (MQ=60)
TGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAC < SRR4302537.2494825/94‑1 (MQ=60)
CGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGG < SRR4302537.1004750/94‑1 (MQ=60)
GATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG < SRR4302537.3754272/94‑1 (MQ=60)
GATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG > SRR4302537.4151166/1‑94 (MQ=60)
GATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCGTACCGCGTCTTATCATGCCTACTGGG > SRR4302537.5630760/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTCAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGG > SRR4302537.4616885/1‑94 (MQ=60)
TTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG < SRR4302537.2917025/94‑1 (MQ=60)
TTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG < SRR4302537.1991349/94‑1 (MQ=60)
CGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA > SRR4302537.5668343/1‑94 (MQ=60)
TAGGCGGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACG < SRR4302537.190706/94‑1 (MQ=60)
TAGGCCGGATAAGGCGCTCGCGCCGCACCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACG < SRR4302537.4612655/94‑1 (MQ=60)
GCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTT < SRR4302537.5589741/94‑1 (MQ=60)
CCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTT > SRR4302537.3112207/1‑94 (MQ=60)
CAGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA < SRR4302537.1741324/94‑1 (MQ=60)
GGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC < SRR4302537.2516175/94‑1 (MQ=60)
GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACA > SRR4302537.1878160/1‑94 (MQ=60)
GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACA > SRR4302537.3536668/1‑94 (MQ=60)
ATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAC < SRR4302537.3067882/94‑1 (MQ=60)
ATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAC > SRR4302537.153726/1‑94 (MQ=60)
AAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > SRR4302537.5784775/1‑94 (MQ=60)
AAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > SRR4302537.2920043/1‑94 (MQ=60)
AAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > SRR4302537.1204749/1‑94 (MQ=60)
AGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG < SRR4302537.602806/94‑1 (MQ=60)
AGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG < SRR4302537.2096760/94‑1 (MQ=60)
AGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG > SRR4302537.5144807/1‑94 (MQ=60)
GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT < SRR4302537.3462945/94‑1 (MQ=60)
GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > SRR4302537.4175122/1‑94 (MQ=60)
GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > SRR4302537.407691/1‑94 (MQ=60)
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GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGGCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448448‑4448634
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
