Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,525,836	T→C	N217S (AAC→AGC)	sgcQ ←	putative nucleoside triphosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,525,836	0	T	C	100.0%	813.2 / NA	236	N217S (AAC→AGC)	sgcQ	putative nucleoside triphosphatase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (132/104); total (132/104)

Only 100 of 241 total aligned reads displayed.

AAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACA  >  NC_000913/4525746‑4525925

 aaaCGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTgg                                                                                        <  2:128214/93‑1 (MQ=255)

 aaaCGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTgg                                                                                        >  1:1334668/1‑93 (MQ=255)

 aaaCGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTgg                                                                                        >  1:3460122/1‑93 (MQ=255)

  aaCGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGc                                                                                       >  2:3431047/1‑93 (MQ=255)

      ccGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAac                                                                                   >  2:4556777/1‑93 (MQ=255)

       cGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAaca                                                                                  <  1:481035/93‑1 (MQ=255)

        gTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAacac                                                                                 <  2:867829/93‑1 (MQ=255)

        gTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAacac                                                                                 >  1:515422/1‑93 (MQ=255)

        gTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAacac                                                                                 <  2:5239615/93‑1 (MQ=255)

         tCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACacg                                                                                >  2:1322032/1‑93 (MQ=255)

           cTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACacgac                                                                              >  1:2742439/1‑93 (MQ=255)

            tttttAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACacgacg                                                                             >  1:6283101/1‑93 (MQ=255)

             ttttAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACgg                                                                            <  1:2309463/93‑1 (MQ=255)

             ttttAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACgg                                                                            >  2:2815230/1‑93 (MQ=255)

              tttAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGgt                                                                           <  1:1920356/93‑1 (MQ=255)

              tttAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGgt                                                                           <  1:555593/93‑1 (MQ=255)

                tAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCGCGTGCTGGCCAACACGACGgtgt                                                                         >  2:502847/1‑93 (MQ=255)

                tAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGgtgt                                                                         >  2:679700/1‑93 (MQ=255)

                 aaaGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTc                                                                        >  2:2272351/1‑93 (MQ=255)

                  aaGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCa                                                                       <  2:2188244/93‑1 (MQ=255)

                   aGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAg                                                                      >  1:4700469/1‑93 (MQ=255)

                   aGGTGGTTGCGGGCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAg                                                                      >  2:1446809/1‑93 (MQ=255)

                     gtggtTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGc                                                                    <  1:611181/93‑1 (MQ=255)

                      tggtTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCa                                                                   >  2:1045883/1‑93 (MQ=255)

                      tggtTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGNGTCAGGCa                                                                   >  2:5301630/1‑93 (MQ=255)

                       ggtTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCAc                                                                  <  1:1654561/93‑1 (MQ=255)

                       ggtTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCAc                                                                  >  1:2097710/1‑93 (MQ=255)

                        gtTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCAcc                                                                 >  1:3135889/1‑93 (MQ=255)

                         ttGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCg                                                                >  2:4296730/1‑93 (MQ=255)

                          tGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGt                                                               <  2:733692/93‑1 (MQ=255)

                            cGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGttt                                                             >  2:2822788/1‑93 (MQ=255)

                             ggTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTc                                                            >  1:6256954/1‑93 (MQ=255)

                              gTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCt                                                           >  1:2492760/1‑93 (MQ=255)

                              gTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCt                                                           >  1:3870022/1‑93 (MQ=255)

                                cacacaGCCATCGGCGATACTGAGTTTTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCttt                                                         <  1:1643974/93‑1 (MQ=255)

                                 acacaGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTg                                                        >  2:3048889/1‑93 (MQ=255)

                                  cacaGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGa                                                       >  2:5635650/1‑93 (MQ=255)

                                  cacaGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGCTTCTTTGa                                                       >  1:256460/1‑93 (MQ=255)

                                    caGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGAcc                                                     >  1:266723/1‑93 (MQ=255)

                                    caGCCATCGGAGATACTGAGTTGTTCCTCCACGTTTTACAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGAcc                                                     <  2:2705888/93‑1 (MQ=255)

                                     aGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGAccc                                                    <  1:2446724/93‑1 (MQ=255)

                                     aGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGAccc                                                    >  2:239398/1‑93 (MQ=255)

                                      gCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCGGGCACCGTTTCTTTGACCCg                                                   <  2:4907720/93‑1 (MQ=255)

                                       ccATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGt                                                  <  1:2089839/93‑1 (MQ=255)

                                        cATCGGCGATACTGAGTTGTTTCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCATCGTTTCTTTGACCCGtt                                                 >  1:3585990/1‑93 (MQ=255)

                                        cATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGtt                                                 >  1:1414420/1‑93 (MQ=255)

                                        cATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGtt                                                 >  1:628468/1‑93 (MQ=255)

                                        cATCGGCGATACTGAGTTGTTCCTCCAAGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGtt                                                 <  1:1518499/93‑1 (MQ=255)

                                         aTCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGttt                                                <  1:1760085/93‑1 (MQ=255)

                                          tCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGtttt                                               <  2:637287/93‑1 (MQ=255)

                                          tCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGCGTCTTTGAGCCGgttt                                               >  2:2616618/1‑93 (MQ=255)

                                              cGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACa                                           <  2:522644/93‑1 (MQ=255)

                                               gATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAg                                          >  2:2481205/1‑93 (MQ=255)

                                               gATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAg                                          <  1:876512/93‑1 (MQ=255)

                                                aTACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGGACCGTTGCCTTGACCCGTTTTAACAgc                                         >  1:2803239/1‑93 (MQ=255)

                                                aTACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAgc                                         <  1:1024592/93‑1 (MQ=255)

                                                aTACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAgc                                         >  2:1578141/1‑93 (MQ=255)

                                                aTACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAgc                                         >  2:1859593/1‑93 (MQ=255)

                                                 tACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAgcg                                        >  2:3309818/1‑93 (MQ=255)

                                                 tACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAgcg                                        >  1:779723/1‑93 (MQ=255)

                                                 tACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAgcg                                        >  1:4153552/1‑93 (MQ=255)

                                                  aCTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAgcgc                                       <  2:5857318/93‑1 (MQ=255)

                                                     gAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCt                                    <  1:1045306/93‑1 (MQ=255)

                                                      aGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTg                                   <  2:5987638/93‑1 (MQ=255)

                                                         tgttCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCg                                >  1:3065763/1‑93 (MQ=255)

                                                          tttCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCgg                               <  1:6058185/92‑1 (MQ=255)

                                                          gttCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCgg                               <  2:6387166/93‑1 (MQ=255)

                                                          gttCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCgg                               >  2:411486/1‑93 (MQ=255)

                                                           ttCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGt                              >  1:2041925/1‑93 (MQ=255)

                                                             cctccACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTAc                            <  2:4663460/93‑1 (MQ=255)

                                                             cctccACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTAc                            <  1:3252552/93‑1 (MQ=255)

                                                             cctccACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTAc                            <  1:1512349/93‑1 (MQ=255)

                                                              ctccACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTAcg                           >  2:6240573/1‑93 (MQ=255)

                                                              ctccACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTAcg                           >  1:4258563/1‑93 (MQ=255)

                                                                ccACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTAcgcg                         <  1:4595252/93‑1 (MQ=255)

                                                                 cACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGt                        >  1:1116508/1‑93 (MQ=255)

                                                                  aCGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTc                       >  1:5262246/1‑93 (MQ=255)

                                                                   cGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTcc                      <  1:1487370/93‑1 (MQ=255)

                                                                    gTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTccc                     >  2:5393032/1‑93 (MQ=255)

                                                                    gTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTccc                     <  2:1975139/93‑1 (MQ=255)

                                                                    gTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTccc                     <  1:4080761/93‑1 (MQ=255)

                                                                      tttCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCcgg                   <  2:3196781/93‑1 (MQ=255)

                                                                        tCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCcggcg                 <  2:3564244/93‑1 (MQ=255)

                                                                        tCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCcggcg                 <  1:4968890/93‑1 (MQ=255)

                                                                         ccAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCcggcgg                <  2:1522108/93‑1 (MQ=255)

                                                                          cAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGt               <  2:2856043/93‑1 (MQ=255)

                                                                           aGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTc              >  1:4993107/1‑93 (MQ=255)

                                                                            ggCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCa             >  2:4844979/1‑93 (MQ=255)

                                                                            ggCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCa             <  2:3803342/93‑1 (MQ=255)

                                                                            ggCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCa             <  1:6465291/93‑1 (MQ=255)

                                                                              cAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGGCAgg           >  2:5494745/1‑93 (MQ=255)

                                                                               aGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGCCGGTACGCGTCCCGGCGGTCAGGc          >  1:4306267/1‑93 (MQ=255)

                                                                                gACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGcc         >  1:5650190/1‑93 (MQ=255)

                                                                                  cGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAg       <  1:4354308/93‑1 (MQ=255)

                                                                                   gCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGa      <  2:784327/93‑1 (MQ=255)

                                                                                    cccGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGaa     >  2:3977281/1‑93 (MQ=255)

                                                                                    cccGTGCTGGCCAACACGACGGGGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTGCCGGCGTGCAGGCCAGaa     >  1:80614/1‑93 (MQ=255)

                                                                                     ccGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGaaa    >  2:4191306/1‑93 (MQ=255)

                                                                                     ccGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGaaa    >  2:5560435/1‑93 (MQ=255)

                                                                                       gtgcTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAaca  >  2:2334546/1‑93 (MQ=255)

AAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACA  >  NC_000913/4525746‑4525925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAGA  >  NC_000913/4525743‑4525929

GCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGC                                                                                               <  SRR4302537.943253/94‑1 (MQ=60)

 CAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCT                                                                                              <  SRR4302537.1761144/94‑1 (MQ=60)

 CAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCT                                                                                              >  SRR4302537.6187643/1‑94 (MQ=60)

  AAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTG                                                                                             >  SRR4302537.4763993/1‑94 (MQ=60)

  AAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTG                                                                                             <  SRR4302537.3887321/94‑1 (MQ=60)

   AAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGG                                                                                            >  SRR4302537.1343966/1‑94 (MQ=60)

   AAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGG                                                                                            >  SRR4302537.3484588/1‑94 (MQ=60)

    AAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGC                                                                                           >  SRR4302537.3672903/1‑94 (MQ=60)

     AACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCC                                                                                          >  SRR4302537.1408887/1‑94 (MQ=60)

          CGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACAC                                                                                     >  SRR4302537.518968/1‑94 (MQ=60)

          CGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACAC                                                                                     <  SRR4302537.484331/94‑1 (MQ=60)

             CCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGAC                                                                                  >  SRR4302537.2761573/1‑94 (MQ=60)

              CTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACG                                                                                 >  SRR4302537.6326185/1‑94 (MQ=60)

               TTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGG                                                                                >  SRR4302537.6450090/1‑94 (MQ=60)

                TTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGT                                                                               >  SRR4302537.2548938/1‑94 (MQ=60)

                TTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGT                                                                               <  SRR4302537.411179/94‑1 (MQ=60)

                TTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGT                                                                               <  SRR4302537.2325765/94‑1 (MQ=60)

                 TTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTG                                                                              <  SRR4302537.559415/94‑1 (MQ=60)

                 TTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTG                                                                              <  SRR4302537.1933693/94‑1 (MQ=60)

                  TTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGT                                                                             >  SRR4302537.105793/1‑94 (MQ=60)

                   TAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTC                                                                            >  SRR4302537.3340763/1‑94 (MQ=60)

                   TAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTC                                                                            >  SRR4302537.2738360/1‑94 (MQ=60)

                    AAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCA                                                                           >  SRR4302537.4831561/1‑94 (MQ=60)

                    AAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCA                                                                           >  SRR4302537.2083493/1‑94 (MQ=60)

                    AAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCA                                                                           <  SRR4302537.5632649/94‑1 (MQ=60)

                     AAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAG                                                                          >  SRR4302537.4732986/1‑94 (MQ=60)

                     AAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAG                                                                          >  SRR4302537.2485446/1‑94 (MQ=60)

                     AAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAG                                                                          <  SRR4302537.1661885/94‑1 (MQ=60)

                      AGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGG                                                                         <  SRR4302537.5322674/94‑1 (MQ=60)

                      AGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGG                                                                         >  SRR4302537.2321851/1‑94 (MQ=60)

                      AGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGG                                                                         >  SRR4302537.2754031/1‑94 (MQ=60)

                       GGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGC                                                                        <  SRR4302537.2178255/94‑1 (MQ=60)

                       GGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGC                                                                        >  SRR4302537.318643/1‑94 (MQ=60)

                       GGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGC                                                                        >  SRR4302537.7873/1‑94 (MQ=60)

                        GTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCA                                                                       <  SRR4302537.4358583/94‑1 (MQ=60)

                        GTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCA                                                                       <  SRR4302537.615354/94‑1 (MQ=60)

                        GTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCA                                                                       >  SRR4302537.1032763/1‑94 (MQ=60)

                         TGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCAC                                                                      <  SRR4302537.1540602/94‑1 (MQ=60)

                         TGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCAC                                                                      >  SRR4302537.2112507/1‑94 (MQ=60)

                         TGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCAC                                                                      >  SRR4302537.665103/1‑94 (MQ=60)

                          GGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACC                                                                     <  SRR4302537.1666158/94‑1 (MQ=60)

                          GGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACC                                                                     >  SRR4302537.3157900/1‑94 (MQ=60)

                             TGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTT                                                                  >  SRR4302537.2797437/1‑94 (MQ=60)

                              GCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTT                                                                 <  SRR4302537.1526820/94‑1 (MQ=60)

                               CGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTC                                                                >  SRR4302537.6299929/1‑94 (MQ=60)

                               CGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTC                                                                >  SRR4302537.6327721/1‑94 (MQ=60)

                                GGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCT                                                               >  SRR4302537.2510312/1‑94 (MQ=60)

                                GGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCT                                                               >  SRR4302537.1673119/1‑94 (MQ=60)

                                GGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCT                                                               >  SRR4302537.500482/1‑94 (MQ=60)

                                GGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCT                                                               >  SRR4302537.3897103/1‑94 (MQ=60)

                                 GTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTT                                                              <  SRR4302537.3408306/94‑1 (MQ=60)

                                  TCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTT                                                             >  SRR4302537.1149729/1‑94 (MQ=60)

                                   CACACAGCCATCGGCGATACTGAGTTTTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTG                                                            <  SRR4302537.1655491/94‑1 (MQ=60)

                                   CACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTG                                                            <  SRR4302537.2898115/94‑1 (MQ=60)

                                    ACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGA                                                           >  SRR4302537.2095246/1‑94 (MQ=60)

                                    ACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGCTTCTTTGA                                                           >  SRR4302537.258279/1‑94 (MQ=60)

                                      ACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACC                                                         >  SRR4302537.268594/1‑94 (MQ=60)

                                       CAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCACCACGACGGTGTCAGGCACCGTTTatttagccc                                                        >  SRR4302537.522495/1‑85 (MQ=60)

                                        AGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCG                                                       <  SRR4302537.2463937/94‑1 (MQ=60)

                                         GCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGT                                                      >  SRR4302537.5902179/1‑94 (MQ=60)

                                          CCATCGGCGATACTGAGTTGTTTCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCATCGTTTCTTTGACCCGTT                                                     >  SRR4302537.3611268/1‑94 (MQ=60)

                                          CCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTT                                                     >  SRR4302537.1424264/1‑94 (MQ=60)

                                          CCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTT                                                     <  SRR4302537.2104579/94‑1 (MQ=60)

                                          CCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTT                                                     >  SRR4302537.632748/1‑94 (MQ=60)

                                           CATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTT                                                    <  SRR4302537.4201930/94‑1 (MQ=60)

                                           CATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTT                                                    <  SRR4302537.2573732/94‑1 (MQ=60)

                                           CATCGGCGATACTGAGTTGTTCCTCCAAGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTT                                                    <  SRR4302537.1529113/94‑1 (MQ=60)

                                            ATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTT                                                   >  SRR4302537.6270019/1‑94 (MQ=60)

                                            ATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTT                                                   <  SRR4302537.1772356/94‑1 (MQ=60)

                                               GGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAAC                                                <  SRR4302537.551452/94‑1 (MQ=60)

                                               GGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAAC                                                <  SRR4302537.1515772/94‑1 (MQ=60)

                                               GGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAAC                                                >  SRR4302537.210538/1‑94 (MQ=60)

                                               GGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGAACCGTTTTAAC                                                >  SRR4302537.1438552/1‑94 (MQ=60)

                                                GCGATACTGAGTTGTTCCTCCACGTTATCCAGGCAGACGCCCGTGCTGGCCAACACGGCGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACA                                               <  SRR4302537.4730266/94‑1 (MQ=60)

                                                  GATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGGACCGTTGCCTTGACCCGTTTTAACAGC                                             >  SRR4302537.2822833/1‑94 (MQ=60)

                                                  GATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGC                                             <  SRR4302537.809480/94‑1 (MQ=60)

                                                  GATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGC                                             <  SRR4302537.882542/94‑1 (MQ=60)

                                                   ATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCG                                            >  SRR4302537.785074/1‑94 (MQ=60)

                                                   ATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCG                                            <  SRR4302537.1031640/94‑1 (MQ=60)

                                                   ATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCG                                            >  SRR4302537.4182554/1‑94 (MQ=60)

                                                   ATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCG                                            <  SRR4302537.1586027/94‑1 (MQ=60)

                                                   ATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCG                                            >  SRR4302537.298285/1‑94 (MQ=60)

                                                        GAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTG                                       <  SRR4302537.1052521/94‑1 (MQ=60)

                                                         AGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGT                                      >  SRR4302537.1490814/1‑94 (MQ=60)

                                                         AGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGT                                      >  SRR4302537.4340599/1‑94 (MQ=60)

                                                          GTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTC                                     <  SRR4302537.359337/94‑1 (MQ=60)

                                                          GTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTC                                     >  SRR4302537.1179328/1‑94 (MQ=60)

                                                           TTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCG                                    >  SRR4302537.4217816/1‑94 (MQ=60)

                                                           TTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCG                                    >  SRR4302537.3087125/1‑94 (MQ=60)

                                                             TTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGT                                  <  SRR4302537.6099805/94‑1 (MQ=60)

                                                             GTTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGT                                  >  SRR4302537.2056198/1‑94 (MQ=60)

                                                              TTCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTA                                 >  SRR4302537.3780105/1‑94 (MQ=60)

                                                               TCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTAC                                >  SRR4302537.6322708/1‑94 (MQ=60)

                                                               TCCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTAC                                >  SRR4302537.910188/1‑94 (MQ=60)

                                                                CCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACG                               <  SRR4302537.3275488/94‑1 (MQ=60)

                                                                CCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACG                               >  SRR4302537.5191594/1‑94 (MQ=60)

                                                                CCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACG                               >  SRR4302537.4288156/1‑94 (MQ=60)

                                                                CCTCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACG                               <  SRR4302537.1522917/94‑1 (MQ=60)

                                                                  TCCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCG                             >  SRR4302537.5051364/1‑94 (MQ=60)

                                                                   CCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGT                            >  SRR4302537.1124232/1‑94 (MQ=60)

                                                                   CCACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGT                            <  SRR4302537.4627035/94‑1 (MQ=60)

                                                                    CACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTC                           >  SRR4302537.5298454/1‑94 (MQ=60)

                                                                     ACGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCC                          >  SRR4302537.6116025/1‑94 (MQ=60)

                                                                      CGTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCC                         <  SRR4302537.1497720/94‑1 (MQ=60)

                                                                       GTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGTCCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCG                        <  SRR4302537.495295/94‑1 (MQ=60)

                                                                       GTTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCG                        <  SRR4302537.4109247/94‑1 (MQ=60)

                                                                        TTTTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGG                       >  SRR4302537.3088038/1‑94 (MQ=60)

                                                                          TTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCG                     >  SRR4302537.1961625/1‑94 (MQ=60)

                                                                          TTCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCG                     <  SRR4302537.4393646/94‑1 (MQ=60)

                                                                           TCCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGG                    <  SRR4302537.5003133/94‑1 (MQ=60)

                                                                            CCAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGT                   <  SRR4302537.2682890/94‑1 (MQ=60)

                                                                             CAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTC                  <  SRR4302537.1872768/94‑1 (MQ=60)

                                                                             CAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTC                  >  SRR4302537.2406238/1‑94 (MQ=60)

                                                                             CAGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTC                  >  SRR4302537.5027513/1‑94 (MQ=60)

                                                                              AGGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCA                 >  SRR4302537.6348206/1‑94 (MQ=60)

                                                                               GGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAG                <  SRR4302537.840116/94‑1 (MQ=60)

                                                                               GGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAG                <  SRR4302537.5022439/94‑1 (MQ=60)

                                                                               GGCAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAG                <  SRR4302537.6509084/94‑1 (MQ=60)

                                                                                 CAGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGCCGGTACGCGTCCCGGCGGTCAGGC              >  SRR4302537.4336202/1‑94 (MQ=60)

                                                                                  AGACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCC             >  SRR4302537.5688859/1‑94 (MQ=60)

                                                                                    ACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAG           <  SRR4302537.5902729/94‑1 (MQ=60)

                                                                                    ACGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAG           <  SRR4302537.6202902/94‑1 (MQ=60)

                                                                                     CGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGA          >  SRR4302537.4079772/1‑94 (MQ=60)

                                                                                     CGCCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGA          <  SRR4302537.4384458/94‑1 (MQ=60)

                                                                                      GCCCGTGCTGGCCAACACGACGGGGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTGCCGGCGTGCAGGCCAGAA         >  SRR4302537.81207/1‑94 (MQ=60)

                                                                                       CCCGTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAA        <  SRR4302537.1772190/94‑1 (MQ=60)

                                                                                          GTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACAC     >  SRR4302537.6343221/1‑94 (MQ=60)

                                                                                          GTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACAC     >  SRR4302537.1254731/1‑94 (MQ=60)

                                                                                          GTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACAC     >  SRR4302537.3346166/1‑94 (MQ=60)

                                                                                          GTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACAC     >  SRR4302537.87865/1‑94 (MQ=60)

                                                                                          GTGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACAC     <  SRR4302537.4314097/94‑1 (MQ=60)

                                                                                           TGCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACA    <  SRR4302537.5815692/94‑1 (MQ=60)

                                                                                            GCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAG   >  SRR4302537.3502352/1‑94 (MQ=60)

                                                                                            GCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAG   <  SRR4302537.3661215/94‑1 (MQ=60)

                                                                                            GCTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAG   <  SRR4302537.1249059/94‑1 (MQ=60)

                                                                                             CTGGCCGACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACTCGTCCCGGCGGTCAGGCCAGAAACACAGA  <  SRR4302537.3517366/94‑1 (MQ=60)

                                                                                             CTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAGA  <  SRR4302537.901181/94‑1 (MQ=60)

GCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAGA  >  NC_000913/4525743‑4525929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`