Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,562,252	A→G	Y5H (TAT→CAT)	yjiL ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,562,252	0	A	G	100.0%	928.4 / NA	261	Y5H (TAT→CAT)	yjiL	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (136/125); total (136/125)

Only 100 of 273 total aligned reads displayed.

GGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATATGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAA  >  NC_000913/4562162‑4562341

gggTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAAtgtg                                                                                         <  2:5743971/93‑1 (MQ=255)

 ggTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTTCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgc                                                                                        >  1:2421984/1‑93 (MQ=255)

 ggTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgc                                                                                        >  1:6031502/1‑93 (MQ=255)

 ggTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgc                                                                                        <  1:616151/93‑1 (MQ=255)

  gTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgcc                                                                                       <  2:5664876/93‑1 (MQ=255)

     ggAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgccact                                                                                    <  1:1786996/93‑1 (MQ=255)

     ggAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgccact                                                                                    <  2:3747651/93‑1 (MQ=255)

     ggAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgccact                                                                                    >  2:4414533/1‑93 (MQ=255)

        aCGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgccactgcc                                                                                 >  2:2961336/1‑93 (MQ=255)

        aCGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGtgccactgcc                                                                                 <  2:5310794/93‑1 (MQ=255)

           aGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTgccactgccact                                                                              >  2:6456059/1‑93 (MQ=255)

            ggAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTc                                                                             <  2:3864285/93‑1 (MQ=255)

             gAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTcc                                                                            <  2:801887/93‑1 (MQ=255)

              aaaCGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCt                                                                           <  1:5689877/93‑1 (MQ=255)

                 cGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTAc                                                                        <  2:2376469/93‑1 (MQ=255)

                  ggCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACa                                                                       <  2:1398601/93‑1 (MQ=255)

                  ggCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACa                                                                       >  1:5717762/1‑93 (MQ=255)

                   gcgcGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAg                                                                      >  2:6177090/1‑93 (MQ=255)

                         aaTCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCAtctc                                                                >  2:5516537/1‑93 (MQ=255)

                           tCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCaa                                                              <  1:5215266/93‑1 (MQ=255)

                            cacaCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAAt                                                             <  1:2063125/93‑1 (MQ=255)

                            cACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAAt                                                             >  2:4019342/1‑93 (MQ=255)

                            cACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAAt                                                             <  1:4704833/93‑1 (MQ=255)

                            cACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAAt                                                             <  1:997257/93‑1 (MQ=255)

                            cACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAAt                                                             <  2:736167/93‑1 (MQ=255)

                             aCGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATa                                                            >  2:5696356/1‑93 (MQ=255)

                             aCGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATa                                                            <  2:3383969/93‑1 (MQ=255)

                              cGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATaa                                                           <  2:1445296/93‑1 (MQ=255)

                               gCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATaaa                                                          <  2:4596994/93‑1 (MQ=255)

                               gCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATaaa                                                          <  2:3574416/93‑1 (MQ=255)

                                ccGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAg                                                         <  1:6431125/93‑1 (MQ=255)

                                ccGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAg                                                         <  2:883665/93‑1 (MQ=255)

                                ccGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAg                                                         >  2:3658962/1‑93 (MQ=255)

                                 cGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAgg                                                        >  2:1031029/1‑93 (MQ=255)

                                 cGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAgg                                                        >  1:2784931/1‑93 (MQ=255)

                                 cGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAgg                                                        >  1:1976744/1‑93 (MQ=255)

                                  gTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGc                                                       >  1:500575/1‑93 (MQ=255)

                                  gTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGc                                                       <  2:4947891/93‑1 (MQ=255)

                                   gcTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGcc                                                      <  1:1439528/92‑1 (MQ=255)

                                      gCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCcgcg                                                   >  1:6291820/1‑93 (MQ=255)

                                        cAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGac                                                 <  1:295961/93‑1 (MQ=255)

                                          gTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGacac                                               >  1:1566247/1‑93 (MQ=255)

                                          gTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGacac                                               >  2:3064733/1‑93 (MQ=255)

                                           tAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACg                                              >  1:3022208/1‑93 (MQ=255)

                                           tAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACg                                              <  2:5781267/93‑1 (MQ=255)

                                            aaGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACgg                                             <  2:34040/93‑1 (MQ=255)

                                            aaGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACgg                                             <  2:2490090/93‑1 (MQ=255)

                                             aGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACggg                                            <  1:458688/93‑1 (MQ=255)

                                              gATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGt                                           <  1:3880496/93‑1 (MQ=255)

                                               aTCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTa                                          >  1:4787265/1‑93 (MQ=255)

                                                tCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTAc                                         <  1:5812488/93‑1 (MQ=255)

                                                tCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTAc                                         <  2:4748838/93‑1 (MQ=255)

                                                 cccTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATACAGGCCGCGACACGGGTAcg                                        >  2:1850814/1‑92 (MQ=255)

                                                 cccTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACt                                        >  1:11643/1‑93 (MQ=255)

                                                   cTTTGGTGGCGGTTGAGCCGGAATTAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGa                                      >  2:6233592/1‑93 (MQ=255)

                                                   cTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGa                                      >  1:1731561/1‑93 (MQ=255)

                                                   cTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGa                                      >  1:2131054/1‑93 (MQ=255)

                                                    tttGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGGCGCGACACGGGTACTGAg                                     >  2:4843470/1‑93 (MQ=255)

                                                    tttGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAg                                     >  2:1562541/1‑93 (MQ=255)

                                                    tttGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAg                                     <  1:6396990/93‑1 (MQ=255)

                                                     ttGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGc                                    <  1:3911520/93‑1 (MQ=255)

                                                     ttGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGc                                    <  2:1957998/93‑1 (MQ=255)

                                                        gtggCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGGTGc                                 >  1:3491821/1‑93 (MQ=255)

                                                        gtggCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGc                                 <  2:6109039/93‑1 (MQ=255)

                                                        gtggCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGc                                 <  1:540834/93‑1 (MQ=255)

                                                           gCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCg                              >  1:923457/1‑93 (MQ=255)

                                                             ggTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGAc                            >  1:4096993/1‑93 (MQ=255)

                                                                tGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATc                         >  2:4815882/1‑93 (MQ=255)

                                                                tGAGCCGGAATCAATGCCAATCGAATGTGCCACCGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATc                         >  1:491079/1‑93 (MQ=255)

                                                                   gCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGa                      <  1:1838777/93‑1 (MQ=255)

                                                                   gCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGa                      <  2:3102365/93‑1 (MQ=255)

                                                                   gCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGa                      <  2:3194736/93‑1 (MQ=255)

                                                                   gCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCACGACATCCGa                      >  2:509235/1‑93 (MQ=255)

                                                                   gCCGGAATCAATGCCAATCGAATGTGCCACTGACACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGa                      <  1:135923/93‑1 (MQ=255)

                                                                   gCCGGAATCAACGCCAATCGAGTGTCCCACTGCCACTCCTTAGAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGa                      <  2:2267956/93‑1 (MQ=255)

                                                                     cGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACGTCCGAgg                    >  1:1480094/1‑93 (MQ=255)

                                                                     cGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAgg                    <  1:2579414/93‑1 (MQ=255)

                                                                      ggAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGt                   <  2:2110025/93‑1 (MQ=255)

                                                                      ggAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGt                   <  2:5437571/93‑1 (MQ=255)

                                                                      ggAATCAATACCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGt                   <  2:2836257/93‑1 (MQ=255)

                                                                       gAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTg                  >  1:5574727/1‑93 (MQ=255)

                                                                        aaTCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTgg                 <  1:2722022/93‑1 (MQ=255)

                                                                         aTCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTggg                >  1:1331716/1‑92 (MQ=255)

                                                                          tCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGag               <  1:430248/93‑1 (MQ=255)

                                                                          tCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGag               <  1:4494436/93‑1 (MQ=255)

                                                                          tCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGag               <  1:2371433/93‑1 (MQ=255)

                                                                             aTGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGagtag            >  2:4407600/1‑93 (MQ=255)

                                                                             aTGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGagtag            >  1:585749/1‑93 (MQ=255)

                                                                              tGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGagtagt           <  2:1768629/93‑1 (MQ=255)

                                                                               gCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTc          <  2:3005433/93‑1 (MQ=255)

                                                                                 cAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTg        >  2:967679/1‑93 (MQ=255)

                                                                                 cAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTg        <  1:597209/93‑1 (MQ=255)

                                                                                  aaTCGAATGTGCCACTGCTGCTCCTTACAGCATCTCAATAAAGCCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGt       <  2:4096261/93‑1 (MQ=255)

                                                                                   aTCGAATGTGCCACTGCCGCTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTGCTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGtt      <  1:3279313/93‑1 (MQ=255)

                                                                                   aTCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGtt      >  1:2264936/1‑93 (MQ=255)

                                                                                   aTCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGtt      <  2:631240/93‑1 (MQ=255)

                                                                                    tCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGttt     >  1:1019690/1‑93 (MQ=255)

                                                                                    tCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGttt     >  2:2707214/1‑93 (MQ=255)

                                                                                     cGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTc    >  1:3807407/1‑93 (MQ=255)

                                                                                      gAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCa   <  1:162587/93‑1 (MQ=255)

GGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATATGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAA  >  NC_000913/4562162‑4562341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGGGGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATATGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAGC  >  NC_000913/4562159‑4562345

AGGGGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATG                                                                                               <  SRR4302537.2189085/94‑1 (MQ=60)

 GGGGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGT                                                                                              >  SRR4302537.2790298/1‑94 (MQ=60)

  GGGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTG                                                                                             <  SRR4302537.4596467/94‑1 (MQ=60)

   GTGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGC                                                                                            <  SRR4302537.1470618/94‑1 (MQ=60)

   GGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTTCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGC                                                                                            >  SRR4302537.2439046/1‑94 (MQ=60)

   GGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGC                                                                                            >  SRR4302537.6072944/1‑94 (MQ=60)

    GGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCC                                                                                           <  SRR4302537.620349/94‑1 (MQ=60)

        GGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTG                                                                                       >  SRR4302537.5194599/1‑94 (MQ=60)

        GGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTG                                                                                       <  SRR4302537.1799485/94‑1 (MQ=60)

         GAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGC                                                                                      <  SRR4302537.1584717/94‑1 (MQ=60)

          AACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCC                                                                                     >  SRR4302537.1347224/1‑94 (MQ=60)

              AGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTC                                                                                 >  SRR4302537.6449505/1‑94 (MQ=60)

               GGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCC                                                                                >  SRR4302537.4900318/1‑94 (MQ=60)

               GGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCC                                                                                >  SRR4302537.4549423/1‑94 (MQ=60)

                 AAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTT                                                                              <  SRR4302537.5728794/94‑1 (MQ=60)

                  AACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTA                                                                             >  SRR4302537.1777640/1‑94 (MQ=60)

                    CGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACA                                                                           >  SRR4302537.5756895/1‑94 (MQ=60)

                     GGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAG                                                                          >  SRR4302537.1600429/1‑94 (MQ=60)

                     GGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAG                                                                          >  SRR4302537.2703047/1‑94 (MQ=60)

                     GGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAG                                                                          <  SRR4302537.1551717/94‑1 (MQ=60)

                        GCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCAT                                                                       <  SRR4302537.6089797/94‑1 (MQ=60)

                        GCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCAT                                                                       <  SRR4302537.4675218/94‑1 (MQ=60)

                            AATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCA                                                                   >  SRR4302537.4049418/1‑94 (MQ=60)

                            AATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCA                                                                   >  SRR4302537.6333625/1‑94 (MQ=60)

                            AATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCA                                                                   >  SRR4302537.5786865/1‑94 (MQ=60)

                              TCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAAT                                                                 <  SRR4302537.5251128/94‑1 (MQ=60)

                              TCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAAT                                                                 <  SRR4302537.2255493/94‑1 (MQ=60)

                               CACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATA                                                                <  SRR4302537.1004140/94‑1 (MQ=60)

                               CACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATA                                                                >  SRR4302537.5733966/1‑94 (MQ=60)

                               CACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATA                                                                <  SRR4302537.1835512/94‑1 (MQ=60)

                               CACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATA                                                                <  SRR4302537.5753114/94‑1 (MQ=60)

                               CACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATA                                                                <  SRR4302537.4737380/94‑1 (MQ=60)

                               CACACCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATA                                                                <  SRR4302537.2077613/94‑1 (MQ=60)

                                ACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAA                                                               >  SRR4302537.5841263/1‑94 (MQ=60)

                                 CGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAA                                                              >  SRR4302537.5516148/1‑94 (MQ=60)

                                 CGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAA                                                              >  SRR4302537.1091625/1‑94 (MQ=60)

                                 CGCCGCCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAA                                                              <  SRR4302537.2415385/94‑1 (MQ=60)

                                   CCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGG                                                            >  SRR4302537.4906431/1‑94 (MQ=60)

                                   CCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGG                                                            <  SRR4302537.6474810/94‑1 (MQ=60)

                                   CCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGG                                                            >  SRR4302537.2804397/1‑94 (MQ=60)

                                   CCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGG                                                            >  SRR4302537.1990480/1‑94 (MQ=60)

                                   CCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGG                                                            >  SRR4302537.3785788/1‑94 (MQ=60)

                                    CGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGC                                                           >  SRR4302537.504018/1‑94 (MQ=60)

                                     GTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCC                                                          >  SRR4302537.3923383/1‑94 (MQ=60)

                                     GTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCC                                                          >  SRR4302537.5865899/1‑94 (MQ=60)

                                      TCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCG                                                         <  SRR4302537.5213947/94‑1 (MQ=60)

                                      GCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCG                                                         <  SRR4302537.1449560/94‑1 (MQ=60)

                                       CTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGC                                                        <  SRR4302537.5705803/94‑1 (MQ=60)

                                        TGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCG                                                       >  SRR4302537.6334933/1‑94 (MQ=60)

                                           CAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACA                                                    <  SRR4302537.298026/94‑1 (MQ=60)

                                           CAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACA                                                    >  SRR4302537.5967321/1‑94 (MQ=60)

                                           CAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACA                                                    <  SRR4302537.3077234/94‑1 (MQ=60)

                                           CAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACA                                                    <  SRR4302537.1328983/94‑1 (MQ=60)

                                           CAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACA                                                    >  SRR4302537.1451379/1‑94 (MQ=60)

                                            AGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACAC                                                   >  SRR4302537.2734938/1‑94 (MQ=60)

                                            AGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACAC                                                   >  SRR4302537.1577174/1‑94 (MQ=60)

                                             GTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATACAGGCCGCGACACG                                                  >  SRR4302537.395978/1‑94 (MQ=60)

                                             GTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACG                                                  >  SRR4302537.5530274/1‑94 (MQ=60)

                                             GTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACG                                                  <  SRR4302537.2118343/94‑1 (MQ=60)

                                             GTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACG                                                  >  SRR4302537.3043274/1‑94 (MQ=60)

                                              TAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGG                                                 >  SRR4302537.1572045/1‑94 (MQ=60)

                                              TAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGG                                                 <  SRR4302537.1699774/94‑1 (MQ=60)

                                              TAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGG                                                 <  SRR4302537.1940443/94‑1 (MQ=60)

                                                AGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGT                                               <  SRR4302537.461850/94‑1 (MQ=60)

                                                AGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGT                                               >  SRR4302537.2833398/1‑94 (MQ=60)

                                                 GATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTA                                              >  SRR4302537.4820308/1‑94 (MQ=60)

                                                 GATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTA                                              <  SRR4302537.3907639/94‑1 (MQ=60)

                                                   TCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACT                                            <  SRR4302537.5852333/94‑1 (MQ=60)

                                                   TCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACT                                            <  SRR4302537.2991420/94‑1 (MQ=60)

                                                   TCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACT                                            <  SRR4302537.823929/94‑1 (MQ=60)

                                                   TCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACT                                            >  SRR4302537.11727/1‑94 (MQ=60)

                                                   TCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACT                                            >  SRR4302537.3014786/1‑94 (MQ=60)

                                                    CCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTG                                           >  SRR4302537.6070523/1‑94 (MQ=60)

                                                    CCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTG                                           >  SRR4302537.5337445/1‑94 (MQ=60)

                                                    CCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTG                                           >  SRR4302537.2780588/1‑94 (MQ=60)

                                                    CCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTG                                           <  SRR4302537.192410/94‑1 (MQ=60)

                                                     CCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGA                                          >  SRR4302537.1743647/1‑94 (MQ=60)

                                                     CCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGA                                          >  SRR4302537.2146049/1‑94 (MQ=60)

                                                      CTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAG                                         >  SRR4302537.2302984/1‑94 (MQ=60)

                                                      CTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAG                                         <  SRR4302537.462470/94‑1 (MQ=60)

                                                       TTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGC                                        <  SRR4302537.6440548/94‑1 (MQ=60)

                                                       TTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGC                                        >  SRR4302537.6442296/1‑94 (MQ=60)

                                                        TTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCT                                       <  SRR4302537.3938859/94‑1 (MQ=60)

                                                        TTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCT                                       <  SRR4302537.775565/94‑1 (MQ=60)

                                                          GGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGGTGC                                     >  SRR4302537.3516521/1‑94 (MQ=60)

                                                           GTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCC                                    >  SRR4302537.938684/1‑94 (MQ=60)

                                                           GTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCC                                    <  SRR4302537.544559/94‑1 (MQ=60)

                                                           GTGGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCC                                    <  SRR4302537.4173288/94‑1 (MQ=60)

                                                             GGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCG                                  <  SRR4302537.6418870/94‑1 (MQ=60)

                                                             GGCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCG                                  >  SRR4302537.929832/1‑94 (MQ=60)

                                                              GCGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGA                                 <  SRR4302537.4784718/94‑1 (MQ=60)

                                                               CGGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGAC                                >  SRR4302537.4125600/1‑94 (MQ=60)

                                                                GGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACA                               >  SRR4302537.1290252/1‑94 (MQ=60)

                                                                GGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACA                               >  SRR4302537.4127816/1‑94 (MQ=60)

                                                                GGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACA                               >  SRR4302537.5279271/1‑94 (MQ=60)

                                                                GGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACA                               <  SRR4302537.1807559/94‑1 (MQ=60)

                                                                GGTTGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACA                               >  SRR4302537.4427098/1‑94 (MQ=60)

                                                                  TTGAGCCGGAATCAATGCCAATCGAATGTGCCACCGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATC                             >  SRR4302537.494454/1‑94 (MQ=60)

                                                                   TGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCC                            <  SRR4302537.3349467/94‑1 (MQ=60)

                                                                   TGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCC                            <  SRR4302537.1351212/94‑1 (MQ=60)

                                                                   TGAGCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCA                            >  SRR4302537.3669835/1‑94 (MQ=60)

                                                                      GCCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAG                         <  SRR4302537.1851571/94‑1 (MQ=60)

                                                                      GCCGGAATCAATGCCAATCGAATGTGCCACTGACACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAG                         <  SRR4302537.136894/94‑1 (MQ=60)

                                                                       CCGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACGTCCGAGG                        >  SRR4302537.1490387/1‑94 (MQ=60)

                                                                        CGGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGT                       <  SRR4302537.2597471/94‑1 (MQ=60)

                                                                         GGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTG                      >  SRR4302537.6006383/1‑94 (MQ=60)

                                                                         GGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTG                      <  SRR4302537.2412190/94‑1 (MQ=60)

                                                                         GGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTG                      >  SRR4302537.5612831/1‑94 (MQ=60)

                                                                         CGAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTG                      <  SRR4302537.6027774/94‑1 (MQ=60)

                                                                          GAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGG                     >  SRR4302537.3882901/1‑94 (MQ=60)

                                                                          GAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGG                     >  SRR4302537.1789265/1‑94 (MQ=60)

                                                                          GAATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGG                     >  SRR4302537.477031/1‑94 (MQ=60)

                                                                           AATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGG                    >  SRR4302537.1340999/1‑94 (MQ=60)

                                                                           AATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGA                    >  SRR4302537.6074066/1‑94 (MQ=60)

                                                                           AATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGA                    <  SRR4302537.2741030/94‑1 (MQ=60)

                                                                           AATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGA                    <  SRR4302537.3876939/94‑1 (MQ=60)

                                                                            ATCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAG                   <  SRR4302537.2062722/94‑1 (MQ=60)

                                                                             TCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGT                  >  SRR4302537.2868516/1‑94 (MQ=60)

                                                                             TCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGT                  <  SRR4302537.2388144/94‑1 (MQ=60)

                                                                             TCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGT                  <  SRR4302537.4525527/94‑1 (MQ=60)

                                                                             TCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGT                  <  SRR4302537.433245/94‑1 (MQ=60)

                                                                             TCAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGT                  <  SRR4302537.2225710/94‑1 (MQ=60)

                                                                              CAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTA                 >  SRR4302537.1381646/1‑94 (MQ=60)

                                                                              CAATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTA                 >  SRR4302537.4988151/1‑94 (MQ=60)

                                                                               AATGCCAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAG                >  SRR4302537.589749/1‑94 (MQ=60)

                                                                                    CAATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGT           <  SRR4302537.601296/94‑1 (MQ=60)

                                                                                     AATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTT          <  SRR4302537.2141846/94‑1 (MQ=60)

                                                                                     AATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTT          >  SRR4302537.2280927/1‑94 (MQ=60)

                                                                                     AATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTT          >  SRR4302537.3052282/1‑94 (MQ=60)

                                                                                      ATCGAATGTGCCACTGCCGCTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTGCTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTT         <  SRR4302537.3302461/94‑1 (MQ=60)

                                                                                      ATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTT         >  SRR4302537.1026716/1‑94 (MQ=60)

                                                                                      ATCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTT         <  SRR4302537.2521983/94‑1 (MQ=60)

                                                                                       TCGAATGTGCCACTGCCACTGCTTACAGCATCTCAATAAAGGCCGCGCCACGGGTAGTGAGCTGCCCGACACCCGAGGTGGAGTAGTCTGTTTC        <  SRR4302537.5270902/94‑1 (MQ=60)

                                                                                       TCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTC        >  SRR4302537.3834102/1‑94 (MQ=60)

                                                                                       TCGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGACGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTC        >  SRR4302537.4382576/1‑94 (MQ=60)

                                                                                        CGAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCA       >  SRR4302537.2530261/1‑94 (MQ=60)

                                                                                         GAATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAA      <  SRR4302537.163743/94‑1 (MQ=60)

                                                                                          AATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAAT     <  SRR4302537.6400673/94‑1 (MQ=60)

                                                                                           ATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATA    >  SRR4302537.2596665/1‑94 (MQ=60)

                                                                                           ATGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATA    <  SRR4302537.659390/94‑1 (MQ=60)

                                                                                            TGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAG   <  SRR4302537.4587298/94‑1 (MQ=60)

                                                                                            TGTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAG   <  SRR4302537.857718/94‑1 (MQ=60)

                                                                                             GTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAGC  >  SRR4302537.568063/1‑94 (MQ=60)

                                                                                             GTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAGC  <  SRR4302537.3619258/94‑1 (MQ=60)

                                                                                             GTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAGC  <  SRR4302537.3312228/94‑1 (MQ=60)

                                                                                             GTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAGC  <  SRR4302537.1936658/94‑1 (MQ=60)

                                                                                             GTGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAGC  >  SRR4302537.1135522/1‑94 (MQ=60)

AGGGGGTTGGAACGAGGAAACGGCGCGTAATCACGCCGTCTGCCAGTAAGATCCCTTTGGTGGCGGTTGAGCCGGAATCAATGCCAATCGAATATGCCACTGCCACTCCTTACAGCATCTCAATAAAGGCCGCGACACGGGTACTGAGCTGCCCGACATCCGAGGTGGAGTAGTCTGTTTCAATAGC  >  NC_000913/4562159‑4562345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`