Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,773,076	T→C	intergenic (+34/‑864)	yfjW → / → yfjX	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,773,076	0	T	C	86.9%	519.3 / 65.7	206	intergenic (+34/‑864)	yfjW/yfjX	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (17/10); new base C (129/50); total (146/60)
Fisher's exact test for biased strand distribution p-value = 3.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 227 total aligned reads displayed.

TATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGT  >  NC_000913/2772985‑2773167

 ataAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACtat                                                                                           <  1:3984048/93‑1 (MQ=255)

 ataAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcat                                                                                           >  1:698650/1‑93 (MQ=255)

 ataAAATGCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcat                                                                                           <  1:3303566/93‑1 (MQ=255)

  taAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcatt                                                                                          >  2:3649742/1‑93 (MQ=255)

  taAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcatt                                                                                          <  1:23406/93‑1 (MQ=255)

    aaaTTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcattta                                                                                        <  1:4386653/93‑1 (MQ=255)

    aaaTTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcattta                                                                                        <  1:900642/93‑1 (MQ=255)

    aaaTTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcattta                                                                                        >  2:6932346/1‑93 (MQ=255)

      attcattcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcatttatt                                                                                      <  1:3200390/93‑1 (MQ=255)

      attcattcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACcatttatt                                                                                      <  2:3098507/93‑1 (MQ=255)

       ttcattcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATttatta                                                                                     >  1:546883/1‑93 (MQ=255)

        tcattcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTaa                                                                                    <  2:5512213/93‑1 (MQ=255)

        tcattcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTaa                                                                                    <  1:1637066/93‑1 (MQ=255)

         cattcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTaaa                                                                                   <  1:1538444/93‑1 (MQ=255)

          attcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTaaaa                                                                                  >  1:2420717/1‑93 (MQ=255)

          attcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTaaaa                                                                                  >  1:3686740/1‑93 (MQ=255)

           ttcattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAat                                                                                 <  2:7020927/93‑1 (MQ=255)

             cattcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAatat                                                                               >  1:6261526/1‑93 (MQ=255)

              attcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATc                                                                              >  1:80091/1‑93 (MQ=255)

              attcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATc                                                                              <  2:6784227/93‑1 (MQ=255)

              attcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATc                                                                              >  1:636015/1‑93 (MQ=255)

              attcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATc                                                                              >  1:4616331/1‑93 (MQ=255)

              attcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATc                                                                              >  2:1488918/1‑93 (MQ=255)

               ttcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATcc                                                                             >  1:2351114/1‑93 (MQ=255)

               ttcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATnc                                                                             >  2:7255195/1‑93 (MQ=255)

               ttcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATcc                                                                             >  1:5863646/1‑93 (MQ=255)

               ttcTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATcc                                                                             <  1:2764765/93‑1 (MQ=255)

                 cTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTa                                                                           >  2:4369504/1‑93 (MQ=255)

                   tACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAg                                                                         >  1:3959607/1‑93 (MQ=255)

                      tttAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTa                                                                      >  1:2590386/1‑93 (MQ=255)

                       ttAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTaa                                                                     >  2:5695423/1‑93 (MQ=255)

                        tAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAg                                                                    <  1:2050180/93‑1 (MQ=255)

                          aGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGcc                                                                  >  2:1997066/1‑93 (MQ=255)

                          aGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGcc                                                                  >  1:4875998/1‑93 (MQ=255)

                           gAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCt                                                                 >  2:2551701/1‑93 (MQ=255)

                           gAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCt                                                                 <  1:3752381/93‑1 (MQ=255)

                              tgatgTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGtt                                                              >  2:2392317/1‑93 (MQ=255)

                              tgatgTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGtt                                                              <  2:7528981/93‑1 (MQ=255)

                              tgatgTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGtt                                                              <  2:4943997/93‑1 (MQ=255)

                              tcatgTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGtt                                                              >  2:2091206/3‑93 (MQ=255)

                               gatgTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGttt                                                             >  2:2256669/1‑93 (MQ=255)

                               gatgTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGttt                                                             >  2:4200470/1‑93 (MQ=255)

                                atgTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGtttt                                                            >  2:1733178/1‑93 (MQ=255)

                                atgTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGtttt                                                            >  1:3566470/1‑93 (MQ=255)

                                   tgaatgaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTaa                                                         >  2:4786344/1‑93 (MQ=255)

                                    gaatgaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTaaa                                                        <  1:1062763/93‑1 (MQ=255)

                                    gaatgaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTaaa                                                        <  1:5315584/93‑1 (MQ=255)

                                    gaatgaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTaaa                                                        >  1:4979331/1‑93 (MQ=255)

                                    gaatgaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTaaa                                                        >  1:3360973/1‑93 (MQ=255)

                                       tgaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCa                                                     >  1:6295384/1‑93 (MQ=255)

                                        gaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAg                                                    >  2:4019841/1‑93 (MQ=255)

                                        gaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAg                                                    >  2:3690068/1‑93 (MQ=255)

                                        gaaAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAg                                                    >  2:6104929/1‑93 (MQ=255)

                                         aaaaTTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAgg                                                   <  1:6805456/93‑1 (MQ=255)

                                           aaTTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCt                                                 >  1:6876274/1‑93 (MQ=255)

                                           aaTTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCt                                                 >  1:2392199/1‑93 (MQ=255)

                                               tATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAg                                             >  1:564668/1‑93 (MQ=255)

                                                aTTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGc                                            <  2:2623089/93‑1 (MQ=255)

                                                aTTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGc                                            >  2:5874402/1‑93 (MQ=255)

                                                aTTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGc                                            >  2:651188/1‑93 (MQ=255)

                                                 ttCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCg                                           >  2:5982171/1‑93 (MQ=255)

                                                  tCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGt                                          >  2:3273914/1‑93 (MQ=255)

                                                    ttGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGa                                        >  2:550334/1‑93 (MQ=255)

                                                    ttGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGa                                        <  2:2753855/93‑1 (MQ=255)

                                                      gTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAg                                      >  1:1210063/1‑93 (MQ=255)

                                                        aaCGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCg                                    <  1:2853691/93‑1 (MQ=255)

                                                        aaCGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCg                                    >  2:3826467/1‑93 (MQ=255)

                                                         aCGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCgg                                   >  2:802854/1‑93 (MQ=255)

                                                         aCGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCgg                                   <  1:1941612/93‑1 (MQ=255)

                                                          cGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGa                                  >  2:4594968/1‑93 (MQ=255)

                                                          cGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGa                                  <  1:5366965/93‑1 (MQ=255)

                                                           gCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGac                                 >  2:1366623/1‑93 (MQ=255)

                                                           gCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGac                                 >  2:435313/1‑93 (MQ=255)

                                                            cATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGaca                                >  2:7504620/1‑93 (MQ=255)

                                                            cATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGaca                                >  1:6710134/1‑93 (MQ=255)

                                                            cATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGaca                                >  2:5428882/1‑93 (MQ=255)

                                                              tttGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACt                              >  2:7128339/1‑93 (MQ=255)

                                                              tttGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACt                              >  1:2196635/1‑93 (MQ=255)

                                                              tttGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACt                              >  2:5776706/1‑93 (MQ=255)

                                                              tttGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACt                              <  1:3158077/93‑1 (MQ=255)

                                                                   cTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATAc                         >  1:5497144/1‑93 (MQ=255)

                                                                    tCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATAcc                        >  1:3225691/1‑93 (MQ=255)

                                                                     ccAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCt                       >  1:6203390/1‑93 (MQ=255)

                                                                         ttGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCtt                   >  1:6518258/1‑93 (MQ=255)

                                                                         ttGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCtt                   >  2:1662379/1‑93 (MQ=255)

                                                                           ggAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTa                 >  1:7359494/1‑93 (MQ=255)

                                                                           ggAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTa                 >  1:6479383/1‑93 (MQ=255)

                                                                            gAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTaa                >  2:583682/1‑93 (MQ=255)

                                                                             aGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTaaa               >  2:6537351/1‑93 (MQ=255)

                                                                              gCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAg              >  1:515291/1‑93 (MQ=255)

                                                                               ccTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGt             <  2:6686983/93‑1 (MQ=255)

                                                                                 tttttATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTgg           <  2:5111120/93‑1 (MQ=255)

                                                                                   tttATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCg         <  1:6916929/93‑1 (MQ=255)

                                                                                   tttATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCg         >  2:3429827/1‑93 (MQ=255)

                                                                                   nttATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGNg         >  2:5728854/2‑93 (MQ=255)

                                                                                    ttATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGt        >  1:3853288/1‑93 (MQ=255)

                                                                                    ttATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGt        <  1:51990/93‑1 (MQ=255)

                                                                                     tATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGtt       >  2:3143488/1‑93 (MQ=255)

                                                                                       tGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGtttt     <  2:6307756/93‑1 (MQ=255)

                                                                                        gACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGttttt    >  1:1409844/1‑93 (MQ=255)

TATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGT  >  NC_000913/2772985‑2773167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCG  >  NC_000913/2772983‑2773169

TCTATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACC                                                                                               >  SRR4302542.1471438/1‑94 (MQ=60)

 CTATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCA                                                                                              >  SRR4302542.4688044/1‑94 (MQ=60)

  TATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTAT                                                                                             <  SRR4302542.7436076/94‑1 (MQ=60)

  TATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCAT                                                                                             >  SRR4302542.5200284/1‑94 (MQ=60)

  TATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCAT                                                                                             >  SRR4302542.704696/1‑94 (MQ=60)

   ATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATT                                                                                            <  SRR4302542.4023349/94‑1 (MQ=60)

   ATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATT                                                                                            >  SRR4302542.3685980/1‑94 (MQ=60)

   ATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATT                                                                                            <  SRR4302542.3334724/94‑1 (MQ=60)

   ATAAAATGCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATT                                                                                            <  SRR4302542.3334723/94‑1 (MQ=60)

    TAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTT                                                                                           <  SRR4302542.23607/94‑1 (MQ=60)

     AAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTA                                                                                          >  SRR4302542.2360976/1‑94 (MQ=60)

      AAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTAT                                                                                         >  SRR4302542.6778921/1‑94 (MQ=60)

      AAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTAT                                                                                         <  SRR4302542.4429691/94‑1 (MQ=60)

      AAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTAT                                                                                         >  SRR4302542.2580467/1‑94 (MQ=60)

      AAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTAT                                                                                         <  SRR4302542.908434/94‑1 (MQ=60)

        ATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTA                                                                                       <  SRR4302542.3230689/94‑1 (MQ=60)

        ATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTA                                                                                       >  SRR4302542.1588361/1‑94 (MQ=60)

        ATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTA                                                                                       >  SRR4302542.551606/1‑94 (MQ=60)

         TTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAA                                                                                      >  SRR4302542.3390272/1‑94 (MQ=60)

          TCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAA                                                                                     <  SRR4302542.1651218/94‑1 (MQ=60)

           CATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAA                                                                                    >  SRR4302542.2444253/1‑94 (MQ=60)

           CATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAA                                                                                    >  SRR4302542.3723114/1‑94 (MQ=60)

           CATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAA                                                                                    <  SRR4302542.1551728/94‑1 (MQ=60)

            ATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAAT                                                                                   >  SRR4302542.1724272/1‑94 (MQ=60)

             TTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATA                                                                                  >  SRR4302542.2806382/1‑94 (MQ=60)

             TTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATA                                                                                  >  SRR4302542.6822456/1‑94 (MQ=60)

              TCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATAT                                                                                 >  SRR4302542.6960433/1‑94 (MQ=60)

              TCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATAT                                                                                 >  SRR4302542.6323225/1‑94 (MQ=60)

               CATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATC                                                                                >  SRR4302542.80756/1‑94 (MQ=60)

               CATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATC                                                                                >  SRR4302542.641488/1‑94 (MQ=60)

               CATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATC                                                                                >  SRR4302542.4661432/1‑94 (MQ=60)

                ATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCC                                                                               >  SRR4302542.2371295/1‑94 (MQ=60)

                ATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCC                                                                               >  SRR4302542.5920499/1‑94 (MQ=60)

                ATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCC                                                                               >  SRR4302542.5335955/1‑94 (MQ=60)

                 TTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCT                                                                              <  SRR4302542.2791408/94‑1 (MQ=60)

                   CTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAA                                                                            <  SRR4302542.3824278/94‑1 (MQ=60)

                   CTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAA                                                                            >  SRR4302542.2500667/1‑94 (MQ=60)

                    TTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAG                                                                           >  SRR4302542.2391411/1‑94 (MQ=60)

                    TTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAG                                                                           >  SRR4302542.3998700/1‑94 (MQ=60)

                     TACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGT                                                                          >  SRR4302542.4967739/1‑94 (MQ=60)

                      ACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTT                                                                         <  SRR4302542.3456286/94‑1 (MQ=60)

                       CTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTA                                                                        >  SRR4302542.2615476/1‑94 (MQ=60)

                          TAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGC                                                                     <  SRR4302542.2067898/94‑1 (MQ=60)

                          TAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGC                                                                     >  SRR4302542.3238980/1‑94 (MQ=60)

                           AAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCC                                                                    >  SRR4302542.553751/1‑94 (MQ=60)

                           AAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCC                                                                    >  SRR4302542.2130227/1‑94 (MQ=60)

                           AAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCC                                                                    >  SRR4302542.4923453/1‑94 (MQ=60)

                             GAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTG                                                                  <  SRR4302542.2320284/94‑1 (MQ=60)

                             GAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTG                                                                  <  SRR4302542.3789503/94‑1 (MQ=60)

                              AATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGT                                                                 >  SRR4302542.717899/1‑94 (MQ=60)

                               ATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTT                                                                <  SRR4302542.4389332/94‑1 (MQ=60)

                               ATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTT                                                                <  SRR4302542.1169321/94‑1 (MQ=60)

                               ATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTT                                                                <  SRR4302542.3217148/94‑1 (MQ=60)

                                TGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTT                                                               >  SRR4302542.4821445/1‑94 (MQ=60)

                                 GATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTT                                                              >  SRR4302542.3599761/1‑94 (MQ=60)

                                     TGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAA                                                          >  SRR4302542.3392561/1‑94 (MQ=60)

                                     TGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAA                                                          >  SRR4302542.2679500/1‑94 (MQ=60)

                                     TGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAA                                                          >  SRR4302542.5027666/1‑94 (MQ=60)

                                      GAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAG                                                         <  SRR4302542.1071897/94‑1 (MQ=60)

                                      GAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAG                                                         <  SRR4302542.5502258/94‑1 (MQ=60)

                                      GAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAG                                                         <  SRR4302542.5367225/94‑1 (MQ=60)

                                        ATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCA                                                       >  SRR4302542.6357412/1‑94 (MQ=60)

                                        ATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCA                                                       >  SRR4302542.5492959/1‑94 (MQ=60)

                                         TGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAG                                                      >  SRR4302542.2222273/1‑94 (MQ=60)

                                         TGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAG                                                      >  SRR4302542.886169/1‑94 (MQ=60)

                                         TGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAG                                                      <  SRR4302542.138729/94‑1 (MQ=60)

                                           AAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGC                                                    <  SRR4302542.6872373/94‑1 (MQ=60)

                                            AAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCT                                                   >  SRR4302542.3015611/1‑94 (MQ=60)

                                            AAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCT                                                   >  SRR4302542.3923171/1‑94 (MQ=60)

                                            AAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCT                                                   >  SRR4302542.6943820/1‑94 (MQ=60)

                                            AAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCT                                                   >  SRR4302542.2414971/1‑94 (MQ=60)

                                             AATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTT                                                  >  SRR4302542.5891391/1‑94 (MQ=60)

                                                TTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAG                                               >  SRR4302542.569528/1‑94 (MQ=60)

                                                 TATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGC                                              >  SRR4302542.3780205/1‑94 (MQ=60)

                                                    TCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTG                                           >  SRR4302542.1513924/1‑94 (MQ=60)

                                                     CTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGA                                          >  SRR4302542.3325565/1‑94 (MQ=60)

                                                       TGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAG                                        >  SRR4302542.1220456/1‑94 (MQ=60)

                                                        GTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGC                                       <  SRR4302542.6325261/94‑1 (MQ=60)

                                                         TAACGCATTTGGCTCCAATTGGAGCCTTTTTTTTACCATTTTTTTAAATATTCTAAGTTAAGTCTGTTTTTttattatggtttttttgttagat                                      >  SRR4302542.2284678/1‑71 (MQ=33)

                                                         TAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCG                                      >  SRR4302542.6525096/1‑94 (MQ=60)

                                                          AACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGG                                     <  SRR4302542.2881112/94‑1 (MQ=60)

                                                           ACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGA                                    <  SRR4302542.1958405/94‑1 (MQ=60)

                                                           ACGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGA                                    >  SRR4302542.538537/1‑94 (MQ=60)

                                                            CGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGAC                                   <  SRR4302542.5419124/94‑1 (MQ=60)

                                                            CGCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGAC                                   >  SRR4302542.6228635/1‑94 (MQ=60)

                                                             GCATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACA                                  >  SRR4302542.6776233/1‑94 (MQ=60)

                                                               ATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACT                                >  SRR4302542.2016147/1‑94 (MQ=60)

                                                               ATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACT                                >  SRR4302542.4543033/1‑94 (MQ=60)

                                                               ATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACT                                <  SRR4302542.5583177/94‑1 (MQ=60)

                                                               ATTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACT                                >  SRR4302542.2215551/1‑94 (MQ=60)

                                                                TTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTC                               >  SRR4302542.1584647/1‑94 (MQ=60)

                                                                TTTGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTC                               <  SRR4302542.3188060/94‑1 (MQ=60)

                                                                  TGGCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCAT                             >  SRR4302542.7033640/1‑94 (MQ=60)

                                                                    GCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATAC                           >  SRR4302542.4021860/1‑94 (MQ=60)

                                                                    GCTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATAC                           >  SRR4302542.5550536/1‑94 (MQ=60)

                                                                     CTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACC                          >  SRR4302542.3256213/1‑94 (MQ=60)

                                                                     CTCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACC                          >  SRR4302542.243457/1‑94 (MQ=60)

                                                                      TCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCT                         >  SRR4302542.6264217/1‑94 (MQ=60)

                                                                      TCCAATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCT                         >  SRR4302542.6926919/1‑94 (MQ=60)

                                                                          ATTGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTT                     >  SRR4302542.6582494/1‑94 (MQ=60)

                                                                            TGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTA                   >  SRR4302542.5099951/1‑94 (MQ=60)

                                                                            TGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTA                   >  SRR4302542.6543215/1‑94 (MQ=60)

                                                                            TGGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTA                   >  SRR4302542.7431585/1‑94 (MQ=60)

                                                                             GGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAA                  >  SRR4302542.6154370/1‑94 (MQ=60)

                                                                             GGAGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAA                  >  SRR4302542.6559601/1‑94 (MQ=60)

                                                                               AGCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAG                >  SRR4302542.519761/1‑94 (MQ=60)

                                                                                GCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGT               <  SRR4302542.6314401/94‑1 (MQ=60)

                                                                                GCCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGT               >  SRR4302542.7244402/1‑94 (MQ=60)

                                                                                 CCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTG              <  SRR4302542.6375989/94‑1 (MQ=60)

                                                                                 CCTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTG              >  SRR4302542.6416510/1‑94 (MQ=60)

                                                                                  CTTTTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGG             >  SRR4302542.5207330/1‑94 (MQ=60)

                                                                                   TTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGC            <  SRR4302542.3144896/94‑1 (MQ=60)

                                                                                     TTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGT          <  SRR4302542.6984832/94‑1 (MQ=60)

                                                                                     TTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGT          >  SRR4302542.3891352/1‑94 (MQ=60)

                                                                                     TTTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGT          >  SRR4302542.3827660/1‑94 (MQ=60)

                                                                                      TTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTT         <  SRR4302542.52412/94‑1 (MQ=60)

                                                                                      TTATGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTT         >  SRR4302542.6756764/1‑94 (MQ=60)

                                                                                         TGACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTT      >  SRR4302542.1422039/1‑94 (MQ=60)

                                                                                          GACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTG     >  SRR4302542.7007610/1‑94 (MQ=60)

                                                                                           ACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGT    <  SRR4302542.4264746/94‑1 (MQ=60)

                                                                                           ACCATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGT    >  SRR4302542.2944211/1‑94 (MQ=60)

                                                                                             CATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCG  >  SRR4302542.280827/1‑94 (MQ=60)

                                                                                             CATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCG  <  SRR4302542.5930686/94‑1 (MQ=60)

TCTATAAAATTCATTCATTCTTACTTTAAGAATGATGTGAATGAAAATTTATTCTTGTAACGCATTTGGCTCCAATTGGAGCCTTTTTATGACTATTTATTAAAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCG  >  NC_000913/2772983‑2773169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`