Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,841,271 |
T→C |
S67G (AGT→GGT) |
hycH ← |
HycH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,841,271 | 0 | T | C | 85.5%
| 582.8
/ 79.5
| 249 | S67G (AGT→GGT) | hycH | HycH |
| Reads supporting (aligned to +/- strand): ref base T (16/20); new base C (108/104); total (124/125) |
| Fisher's exact test for biased strand distribution p-value = 5.89e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 |
Only 100 of 267 total aligned reads displayed.
ATCGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTGAC > NC_000913/2841179‑2841363
|
cGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCAccgc < 2:4810195/93‑1 (MQ=255)
gAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGGTTCActgcc > 1:2664698/1‑93 (MQ=255)
gAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCAccgcc > 2:929023/1‑93 (MQ=255)
gAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCAccgcc < 1:483180/93‑1 (MQ=255)
aaTGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCAccgcct > 1:969059/1‑93 (MQ=255)
tGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCAccgcctgc > 2:6352072/1‑93 (MQ=255)
tGCGTAGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCActgcctgc < 2:3014552/93‑1 (MQ=255)
cGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCgcctgcct < 1:7265494/93‑1 (MQ=255)
ttGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTcc > 2:395287/1‑93 (MQ=255)
tGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCa < 1:6741272/93‑1 (MQ=255)
aGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTg > 2:6031405/1‑93 (MQ=255)
gCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTgg > 2:2127479/1‑93 (MQ=255)
tCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCaa < 2:889681/93‑1 (MQ=255)
tCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCaa < 2:3449691/93‑1 (MQ=255)
tCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCaa < 2:2559277/93‑1 (MQ=255)
cGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAAt < 1:6533163/93‑1 (MQ=255)
gCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATcc > 2:2429308/1‑93 (MQ=255)
cataTGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGTTTCACCGCCTGCCTCCAGAGTGGCAATCCa < 1:1804749/90‑1 (MQ=255)
tGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGcc < 2:5222068/93‑1 (MQ=255)
ggTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCa > 2:6681890/1‑93 (MQ=255)
ttAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGa > 2:4904410/1‑93 (MQ=255)
ttAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGa < 1:363932/93‑1 (MQ=255)
aaTGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGata < 2:5401464/93‑1 (MQ=255)
aaTGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGata < 2:6990165/93‑1 (MQ=255)
aaTGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGata > 1:2454577/1‑93 (MQ=255)
aTGTCGATGCCGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCCCCGCCTGCCTCCAGAGTGGCAATCCATGCCAGatat < 1:1695516/93‑1 (MQ=255)
aTGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGatat < 1:5601463/93‑1 (MQ=255)
tGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATAtt < 2:7518391/93‑1 (MQ=255)
gTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTc < 1:4458923/93‑1 (MQ=255)
gTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTc < 1:705663/93‑1 (MQ=255)
gTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTc > 1:6802172/1‑93 (MQ=255)
cGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCAt > 1:1168848/1‑93 (MQ=255)
aTGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATcc > 2:7046960/1‑93 (MQ=255)
tGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATccc > 2:2407740/1‑93 (MQ=255)
tGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATccc > 1:6295207/1‑93 (MQ=255)
tGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATccc < 1:6633639/93‑1 (MQ=255)
gACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCa < 2:4356716/93‑1 (MQ=255)
aCGATCTCACCATATTGCGGCACGCCTTCCATTTTGCCGCGGGCTTCCCCGCCTTCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCAc < 1:6347381/93‑1 (MQ=255)
cGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACg < 1:4331835/93‑1 (MQ=255)
cGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACg > 2:3711564/1‑93 (MQ=255)
gATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACgg > 1:4073433/1‑93 (MQ=255)
gATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACgg < 1:3408546/93‑1 (MQ=255)
gATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACgg > 2:168095/1‑93 (MQ=255)
gATCTCACCATATTTCGGCACGCCTCCCTTTTTGCGGCGGGCTTCCCCCCCTGCCTCCAAAGTGGCAATCCATGCCAGATATTCATCCCACgg > 2:2577207/1‑93 (MQ=255)
aTCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACggg < 1:2704915/93‑1 (MQ=255)
aTCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACggg < 1:2079977/93‑1 (MQ=255)
aTCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACggg > 1:2175138/1‑93 (MQ=255)
aTCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACggg > 2:740629/1‑93 (MQ=255)
tctcACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGc > 2:5741986/1‑93 (MQ=255)
tcACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTAGCAATCCATGCCAGATATTCATCCCACGGGCAg > 2:5083472/1‑93 (MQ=255)
aCCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGt < 1:4975677/93‑1 (MQ=255)
aCCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGGGGCAATCCATGCCAGATATTTATCCCACGGGGAggg > 1:4178490/1‑92 (MQ=255)
cATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGa > 1:2023240/1‑93 (MQ=255)
cATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGa < 1:5089774/93‑1 (MQ=255)
cATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGa < 2:1215898/93‑1 (MQ=255)
atatTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAg < 2:6292686/93‑1 (MQ=255)
tatTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAgc > 1:1269729/1‑93 (MQ=255)
tatTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAgc > 2:5917499/1‑93 (MQ=255)
atTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAgcg > 2:3185979/1‑93 (MQ=255)
tttCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAgcgc > 1:3187779/1‑93 (MQ=255)
tttCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAgcgc < 2:2924210/93‑1 (MQ=255)
ttCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGcgcc < 2:4251880/93‑1 (MQ=255)
tCGGCACGCCTTCCATTTCGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGcgccg > 1:6397696/1‑93 (MQ=255)
cGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGcgccgc < 2:1993601/93‑1 (MQ=255)
cGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGcgccgc > 2:5287418/1‑93 (MQ=255)
gCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCtt > 2:1474815/1‑93 (MQ=255)
aCGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCACCCCACGGGCAGGTGAGCGCCGCTTcc < 2:2670372/93‑1 (MQ=255)
aCGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTcc > 2:1418062/1‑93 (MQ=255)
aCGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTcc > 1:376428/1‑93 (MQ=255)
ccTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGGGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAgg > 1:492443/1‑93 (MQ=255)
ccTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAgg > 1:2893831/1‑93 (MQ=255)
cTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGc > 2:7287132/1‑93 (MQ=255)
cTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGGGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGCCGCTTCCAGGc > 1:4565402/1‑93 (MQ=255)
ccATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAAt > 2:5592256/1‑93 (MQ=255)
ccATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAAt > 2:3887618/1‑93 (MQ=255)
cATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATc < 2:133074/93‑1 (MQ=255)
cATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATc < 1:7361504/93‑1 (MQ=255)
aTTTTGCGGCGGGCTTCACCGCCTGCCTCCCGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCg > 1:3535047/1‑93 (MQ=255)
aTTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCg < 2:336811/93‑1 (MQ=255)
tttGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGAt < 1:3911604/93‑1 (MQ=255)
ttGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATa < 1:5800171/93‑1 (MQ=255)
ttGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATa < 2:1970375/93‑1 (MQ=255)
ggcggGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAAccc > 2:4732147/1‑93 (MQ=255)
gcggGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAAcccc < 1:1062598/93‑1 (MQ=255)
gcggGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAAcccc > 2:2327243/1‑93 (MQ=255)
gggCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCaa > 1:1203042/1‑93 (MQ=255)
gggCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCaa < 2:5357788/93‑1 (MQ=255)
gggCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCaa < 1:1463906/93‑1 (MQ=255)
gggCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCaa < 1:7179664/93‑1 (MQ=255)
gggCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCaa < 1:2735898/93‑1 (MQ=255)
ggCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAg > 2:6138611/1‑93 (MQ=255)
ggCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAg < 1:1342580/93‑1 (MQ=255)
gCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAgg < 2:4174663/93‑1 (MQ=255)
gCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAgg > 1:5327332/1‑93 (MQ=255)
cTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAggt < 1:2739785/93‑1 (MQ=255)
cTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAggt > 1:5464028/1‑93 (MQ=255)
ttCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAggtg > 1:768494/1‑93 (MQ=255)
tCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAggtgg > 1:519859/1‑93 (MQ=255)
cACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAggtggt < 1:3199463/93‑1 (MQ=255)
tgcctgccTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTGAc > 1:2487079/1‑93 (MQ=255)
|
ATCGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTGAC > NC_000913/2841179‑2841363
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATCGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTGACC > NC_000913/2841178‑2841364
|
TATCGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACC < SRR4302542.6428633/94‑1 (MQ=60)
ATCGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCG > SRR4302542.4762556/1‑94 (MQ=60)
CGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGGTTCACTGCC > SRR4302542.2690420/1‑94 (MQ=60)
CGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCC > SRR4302542.6823090/1‑94 (MQ=60)
GAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCT > SRR4302542.5283441/1‑94 (MQ=60)
GAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCT < SRR4302542.487366/94‑1 (MQ=60)
GAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCT > SRR4302542.977405/1‑94 (MQ=60)
CGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTC < SRR4302542.7336712/94‑1 (MQ=60)
TTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCA < SRR4302542.3949475/94‑1 (MQ=60)
TGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAG < SRR4302542.6807619/94‑1 (MQ=60)
GGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGGTTTACCGCCTGCCTCCAGA > SRR4302542.5399300/1‑94 (MQ=60)
GCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAG < SRR4302542.4374507/94‑1 (MQ=60)
CAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTG < SRR4302542.6706297/94‑1 (MQ=60)
CAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTG < SRR4302542.3314724/94‑1 (MQ=60)
GCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGC > SRR4302542.2766117/1‑94 (MQ=60)
GCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCCGCCTCCCGAGTGGC > SRR4302542.6626200/1‑94 (MQ=60)
CATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGGGGCA > SRR4302542.516225/1‑94 (MQ=60)
ATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAA > SRR4302542.205159/1‑94 (MQ=60)
TCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAAT < SRR4302542.1237971/94‑1 (MQ=60)
CGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATC < SRR4302542.6597556/94‑1 (MQ=60)
GGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCC < SRR4302542.3469390/94‑1 (MQ=60)
GGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCCTCACTGCCTGCCTCCAGAGGGGCAATAC > SRR4302542.974303/1‑94 (MQ=60)
CATATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGTTTCACCGCCTGCCTCCAGAGTGGCAATCCAT < SRR4302542.1820388/94‑1 (MQ=60)
CACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCAT > SRR4302542.3582407/1‑94 (MQ=60)
CACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCAT > SRR4302542.7291725/1‑94 (MQ=60)
ACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATG < SRR4302542.5338004/94‑1 (MQ=60)
TTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGAT < SRR4302542.5113589/94‑1 (MQ=60)
TTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGAT < SRR4302542.1170126/94‑1 (MQ=60)
TTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGAT < SRR4302542.367096/94‑1 (MQ=60)
TAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATA < SRR4302542.7524025/94‑1 (MQ=60)
TAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATA > SRR4302542.2478443/1‑94 (MQ=60)
TAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATA < SRR4302542.1838858/94‑1 (MQ=60)
AATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATAT > SRR4302542.4976502/1‑94 (MQ=60)
ATGTCGATGCCGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCCCCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATT < SRR4302542.1710207/94‑1 (MQ=60)
ATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATT < SRR4302542.5655876/94‑1 (MQ=60)
TGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTC < SRR4302542.5788325/94‑1 (MQ=60)
TGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTC > SRR4302542.6869053/1‑94 (MQ=60)
GTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCA < SRR4302542.4502664/94‑1 (MQ=60)
GTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCA > SRR4302542.3223139/1‑94 (MQ=60)
GTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCA < SRR4302542.711770/94‑1 (MQ=60)
TCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCAT < SRR4302542.457817/94‑1 (MQ=60)
TCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCAT < SRR4302542.3120419/94‑1 (MQ=60)
TCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCAT > SRR4302542.1178945/1‑94 (MQ=60)
GATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCC > SRR4302542.1785301/1‑94 (MQ=60)
GATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCC > SRR4302542.3346224/1‑94 (MQ=60)
ATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCC > SRR4302542.6760370/1‑94 (MQ=60)
ATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCC > SRR4302542.6357232/1‑94 (MQ=60)
ATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCC > SRR4302542.5701082/1‑94 (MQ=60)
TGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCA < SRR4302542.6699031/94‑1 (MQ=60)
ACGATCTCCCCATATTTCGGGACGCCTTCCATTTTGCGGCGGGCTTCACTGCATGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCTCG < SRR4302542.7316278/94‑1 (MQ=60)
ACGATCTCACCATATTGCGGCACGCCTTCCATTTTGCCGCGGGCTTCCCCGCCTTCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACG < SRR4302542.6409918/94‑1 (MQ=60)
CGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGG < SRR4302542.4374412/94‑1 (MQ=60)
CGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGG > SRR4302542.4113595/1‑94 (MQ=60)
GATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGG > SRR4302542.2193862/1‑94 (MQ=60)
GATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGG < SRR4302542.3440496/94‑1 (MQ=60)
GATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCCCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACCGG > SRR4302542.385990/1‑94 (MQ=60)
ATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTTACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGC > SRR4302542.6402087/1‑94 (MQ=60)
ATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGC < SRR4302542.2731009/94‑1 (MQ=60)
ATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGC < SRR4302542.2097936/94‑1 (MQ=60)
CTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAG > SRR4302542.4082788/1‑94 (MQ=60)
CTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAG > SRR4302542.2486746/1‑94 (MQ=60)
CTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAG > SRR4302542.121563/1‑94 (MQ=60)
TCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGG < SRR4302542.1703726/94‑1 (MQ=60)
CACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGGGGCAATCCATGCCAGATATTTATCCCACGGGgaggg > SRR4302542.4219694/1‑89 (MQ=60)
ACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTG < SRR4302542.5023982/94‑1 (MQ=60)
ACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGGGGCAATCCATGCCCGATATTCATCCCACGGGCAGGTG > SRR4302542.4294815/1‑94 (MQ=60)
CCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGA > SRR4302542.2040738/1‑94 (MQ=60)
CCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGA < SRR4302542.2402585/94‑1 (MQ=60)
CCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGA < SRR4302542.5653690/94‑1 (MQ=60)
CCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGA < SRR4302542.7043408/94‑1 (MQ=60)
CCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGA < SRR4302542.4145422/94‑1 (MQ=60)
CATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAG < SRR4302542.4364922/94‑1 (MQ=60)
CATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAG < SRR4302542.5139244/94‑1 (MQ=60)
CATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAG < SRR4302542.1356480/94‑1 (MQ=60)
ATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGC > SRR4302542.1280639/1‑94 (MQ=60)
ATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGC > SRR4302542.2719685/1‑94 (MQ=60)
ATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGC > SRR4302542.253797/1‑94 (MQ=60)
TATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCG > SRR4302542.1185254/1‑94 (MQ=60)
ATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGC > SRR4302542.3217976/1‑94 (MQ=60)
ATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGC > SRR4302542.368851/1‑94 (MQ=60)
ATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCCGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGC > SRR4302542.2096287/1‑94 (MQ=60)
TTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCT < SRR4302542.6318368/94‑1 (MQ=60)
TTCGGCACGCCTTCCATTTCGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCG > SRR4302542.6460730/1‑94 (MQ=60)
TCGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGCCGC > SRR4302542.4991852/1‑94 (MQ=60)
CGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCT < SRR4302542.1877501/94‑1 (MQ=60)
CGGCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCT < SRR4302542.2498289/94‑1 (MQ=60)
GGCACGACTTCCATTTTGCGGCGGGCTTCACCGCCCGCCTCCAGAGGGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGCCGCTT > SRR4302542.7518859/1‑94 (MQ=60)
GCACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTC > SRR4302542.935904/1‑94 (MQ=60)
CACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCC > SRR4302542.379703/1‑94 (MQ=60)
CACGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCC > SRR4302542.1707715/1‑94 (MQ=60)
CGCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAG < SRR4302542.4545584/94‑1 (MQ=60)
GCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGGGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGG > SRR4302542.496691/1‑94 (MQ=60)
GCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGG > SRR4302542.2921606/1‑94 (MQ=60)
GCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGG < SRR4302542.6565980/94‑1 (MQ=60)
GCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGG < SRR4302542.7235086/94‑1 (MQ=60)
GCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGG > SRR4302542.4690209/1‑94 (MQ=60)
GCCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGCCGCTTCCAGG > SRR4302542.1212841/1‑94 (MQ=60)
CCTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGGGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGCCGCTTCCAGGC > SRR4302542.4610096/1‑94 (MQ=60)
CTTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGCCGCTTCCCGGCA > SRR4302542.2813000/1‑94 (MQ=60)
CTTCCATTTGGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCA < SRR4302542.6412518/94‑1 (MQ=60)
TTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAA > SRR4302542.212103/1‑94 (MQ=60)
TTCCATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAA > SRR4302542.3498016/1‑94 (MQ=60)
TCCATTTTGCGGCGGGCTCCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAAT > SRR4302542.1329094/1‑94 (MQ=60)
CCATTTTGCGGCGGGCTTTACCGCCCGCCTCCAAAGGGGCAATCCATGCCAGATATTCATCCCACGGGCCGGGGGGCGCCGCTTCCAGGCAAAC > SRR4302542.7196114/1‑94 (MQ=60)
CCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATC < SRR4302542.5467014/94‑1 (MQ=60)
CATTTTGCGGCGGGCTTCACCGCCTGCCTCCCGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCG > SRR4302542.3568085/1‑94 (MQ=60)
CATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCG < SRR4302542.4928060/94‑1 (MQ=60)
CATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCG < SRR4302542.7433607/94‑1 (MQ=60)
ATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGA > SRR4302542.4119506/1‑94 (MQ=60)
ATTTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGA > SRR4302542.6511969/1‑94 (MQ=60)
TTTGCGGCGGGCTTCACCGCCTGCCTCCCGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATA > SRR4302542.4683016/1‑94 (MQ=60)
TTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATA < SRR4302542.3950206/94‑1 (MQ=60)
TTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATA < SRR4302542.1429588/94‑1 (MQ=60)
TTTGCGGCGGGCTTCACCGCCTGCCTCCAGAGGGGCAATCCATGCCAGATATTCATCCCACGGGCAGGGGAGCGCCGCTTCCAGGCAAACGATA > SRR4302542.2811743/1‑94 (MQ=60)
TTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAA < SRR4302542.5856464/94‑1 (MQ=60)
TTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAA < SRR4302542.2754300/94‑1 (MQ=60)
TTGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAA < SRR4302542.6460029/94‑1 (MQ=60)
TGCGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAAC < SRR4302542.3097395/94‑1 (MQ=60)
CGGCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCC > SRR4302542.6835358/1‑94 (MQ=60)
GGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCAAGGCAATCGATAACCCC > SRR4302542.2743328/1‑94 (MQ=60)
GCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCA < SRR4302542.1071730/94‑1 (MQ=60)
GCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCA > SRR4302542.3796154/1‑94 (MQ=60)
GCGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCA < SRR4302542.6204938/94‑1 (MQ=60)
CGGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAA > SRR4302542.1213391/1‑94 (MQ=60)
GGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAG < SRR4302542.5063256/94‑1 (MQ=60)
GGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAG < SRR4302542.1476544/94‑1 (MQ=60)
GGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAG < SRR4302542.2762282/94‑1 (MQ=60)
GGGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAG < SRR4302542.7250083/94‑1 (MQ=60)
GGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGG < SRR4302542.1354135/94‑1 (MQ=60)
GGCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGG > SRR4302542.5379090/1‑94 (MQ=60)
GCTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGT > SRR4302542.5517108/1‑94 (MQ=60)
CTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTG < SRR4302542.2766203/94‑1 (MQ=60)
CTTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTG > SRR4302542.775145/1‑94 (MQ=60)
TTCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGG > SRR4302542.524357/1‑94 (MQ=60)
TCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGT > SRR4302542.2314255/1‑94 (MQ=60)
TCACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGT < SRR4302542.7409187/94‑1 (MQ=60)
CACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTG < SRR4302542.3229755/94‑1 (MQ=60)
CACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTG < SRR4302542.271630/94‑1 (MQ=60)
ACCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATTCCACGGGCAGGTGAGCGCCGCGTCCAGGCAATCGATAACCCCAAGGTGGAGA > SRR4302542.6672040/1‑94 (MQ=60)
CTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTGAC > SRR4302542.2511214/1‑94 (MQ=60)
CCGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTGAC > SRR4302542.2650338/1‑94 (MQ=60)
CGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTGACC > SRR4302542.3162416/1‑94 (MQ=60)
|
TATCGAATGCGTTGGCCAGCATCGGCACATGGTTAATGTCGATGACGATCTCACCATATTTCGGCACGCCTTCCATTTTGCGGCGGGCTTCACTGCCTGCCTCCAGAGTGGCAATCCATGCCAGATATTCATCCCACGGGCAGGTGAGCGCCGCTTCCAGGCAATCGATAACCCCAAGGTGGTGACC > NC_000913/2841178‑2841364
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
