Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,865,091 |
T→C |
T162A (ACC→GCC) |
rpoS ← |
sigma S factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,865,091 | 0 | T | C | 88.1%
| 657.7
/ 71.9
| 261 | T162A (ACC→GCC) | rpoS | sigma S factor |
| Reads supporting (aligned to +/- strand): ref base T (9/22); new base C (96/134); total (105/156) |
| Fisher's exact test for biased strand distribution p-value = 2.41e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.28e-01 |
Only 100 of 268 total aligned reads displayed.
TTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTA > NC_000913/2864999‑2865183
|
ttCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGt > 2:3476479/1‑93 (MQ=255)
cATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGctt < 2:5919214/93‑1 (MQ=255)
cATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGctt < 2:4227926/93‑1 (MQ=255)
cATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGctt > 1:7299727/1‑93 (MQ=255)
aTGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTg > 2:5368372/1‑93 (MQ=255)
aTGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTg < 2:3703904/93‑1 (MQ=255)
aTGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTg < 1:6428356/93‑1 (MQ=255)
tGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTgg < 2:586374/93‑1 (MQ=255)
tCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTc > 1:5054124/1‑93 (MQ=255)
tCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTc < 1:3691331/93‑1 (MQ=255)
tCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTc < 2:156329/93‑1 (MQ=255)
aGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATa < 2:3305991/93‑1 (MQ=255)
gCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATaa < 2:2059986/93‑1 (MQ=255)
gCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATaa > 1:40163/1‑93 (MQ=255)
cTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAAt > 1:1026046/1‑93 (MQ=255)
cTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAAt > 1:763729/1‑93 (MQ=255)
ttATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATc < 1:6888354/93‑1 (MQ=255)
ttATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATc > 2:6369911/1‑93 (MQ=255)
aTGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGc < 1:5352906/93‑1 (MQ=255)
aTGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGc > 1:5663080/1‑93 (MQ=255)
tGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGcc < 1:2927378/93‑1 (MQ=255)
gggACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGccc < 2:1223192/93‑1 (MQ=255)
ggACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCg < 1:6425585/93‑1 (MQ=255)
cAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTc > 2:1919271/1‑93 (MQ=255)
cAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTc < 1:532065/93‑1 (MQ=255)
aCTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCaa > 1:4149352/1‑93 (MQ=255)
cTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAAt < 2:1413326/93‑1 (MQ=255)
cTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAAt > 1:7155287/1‑93 (MQ=255)
cTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAAt < 2:2286069/93‑1 (MQ=255)
cTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAAt < 1:1083897/93‑1 (MQ=255)
tCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATc > 2:6071783/1‑93 (MQ=255)
cACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCg > 2:7299415/1‑93 (MQ=255)
cACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCg < 2:3328916/93‑1 (MQ=255)
cACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCg > 1:3071366/1‑93 (MQ=255)
cGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTc < 2:7340004/93‑1 (MQ=255)
gTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCt < 2:3612907/93‑1 (MQ=255)
tGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTg > 1:459812/1‑93 (MQ=255)
tGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTg < 2:6848837/93‑1 (MQ=255)
cGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGc > 2:5039121/1‑93 (MQ=255)
ggTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCg < 2:4876735/93‑1 (MQ=255)
gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGcta > 2:7189414/1‑91 (MQ=255)
gCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATcc > 2:4345467/1‑93 (MQ=255)
cAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACTGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATcca < 2:3139019/93‑1 (MQ=255)
cAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATcca < 2:1667786/93‑1 (MQ=255)
cAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATcca < 1:3189089/93‑1 (MQ=255)
aGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccac < 1:4351068/93‑1 (MQ=255)
ggTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacc < 1:1387526/93‑1 (MQ=255)
ggTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacc > 2:6820438/1‑93 (MQ=255)
ggTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacc < 1:2233000/93‑1 (MQ=255)
gTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacca > 1:3769373/1‑93 (MQ=255)
aaCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTGTGGCGAATCCACCAGGt > 2:7468416/1‑93 (MQ=255)
aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtt < 2:1935162/93‑1 (MQ=255)
aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtt < 2:172884/93‑1 (MQ=255)
aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtt > 1:5483328/1‑93 (MQ=255)
cGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTg > 2:5593631/1‑93 (MQ=255)
gTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGc > 2:6690814/1‑93 (MQ=255)
gTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGc > 2:5206176/1‑93 (MQ=255)
ttCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCg < 1:1471499/93‑1 (MQ=255)
ttCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCg > 1:4813304/1‑93 (MQ=255)
ttCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCg > 1:6307410/1‑93 (MQ=255)
tCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGt > 1:254489/1‑93 (MQ=255)
cAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTa < 2:2421982/93‑1 (MQ=255)
cAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTa > 1:2853257/1‑93 (MQ=255)
cAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTa < 2:6214503/93‑1 (MQ=255)
aGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTAt > 1:38660/1‑93 (MQ=255)
aGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTAt > 2:4355789/1‑93 (MQ=255)
cTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGt < 2:1445140/93‑1 (MQ=255)
tCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGtt > 2:4546562/1‑93 (MQ=255)
tCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGCATGtt < 1:1368767/93‑1 (MQ=255)
ccTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTg < 2:4710535/93‑1 (MQ=255)
ccTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTg > 2:2546771/1‑93 (MQ=255)
cTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTga > 2:689702/1‑93 (MQ=255)
ttACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgaga < 2:1122135/93‑1 (MQ=255)
tACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGaa < 2:4458591/93‑1 (MQ=255)
cGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGc < 2:553432/93‑1 (MQ=255)
cGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGc < 2:523879/93‑1 (MQ=255)
gATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCg > 1:1826444/1‑93 (MQ=255)
aTGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCgg < 2:6989097/93‑1 (MQ=255)
tgtgAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGa < 2:2317184/93‑1 (MQ=255)
gtgAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGaa > 1:1672643/1‑93 (MQ=255)
tgAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGaaa > 1:3387370/1‑93 (MQ=255)
gAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAAc < 2:6559958/93‑1 (MQ=255)
gAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAAc < 1:3233232/93‑1 (MQ=255)
aTCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCa > 1:6765735/1‑93 (MQ=255)
aTCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCa < 1:5756266/93‑1 (MQ=255)
cGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACg < 1:6651941/93‑1 (MQ=255)
ggCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGt > 1:128999/1‑93 (MQ=255)
cAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTc > 1:2751709/1‑93 (MQ=255)
aaaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTcc < 1:2329607/93‑1 (MQ=255)
aaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCg < 2:394909/93‑1 (MQ=255)
aaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCg < 2:2886837/93‑1 (MQ=255)
aCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCgg < 2:1337508/93‑1 (MQ=255)
aaTAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTc > 2:5744452/1‑93 (MQ=255)
aaTAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTc > 2:6266932/1‑93 (MQ=255)
aaTAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTc < 2:2685821/93‑1 (MQ=255)
aTAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCa > 2:247673/1‑93 (MQ=255)
aGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCaaa > 1:2607321/1‑93 (MQ=255)
gTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAAc > 1:2123765/1‑93 (MQ=255)
gTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAAc < 1:355831/93‑1 (MQ=255)
tACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACt < 1:1967429/93‑1 (MQ=255)
|
TTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTA > NC_000913/2864999‑2865183
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTAC > NC_000913/2864998‑2865184
|
GTTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGC > SRR4302542.3456898/1‑94 (MQ=60)
TCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTT < SRR4302542.5666593/94‑1 (MQ=60)
TCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTT > SRR4302542.7371257/1‑94 (MQ=60)
TCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTT > SRR4302542.2611373/1‑94 (MQ=60)
CATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTG < SRR4302542.4360666/94‑1 (MQ=60)
CATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTG > SRR4302542.2044941/1‑94 (MQ=60)
CATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTG > SRR4302542.1607453/1‑94 (MQ=60)
CATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTG > SRR4302542.3248805/1‑94 (MQ=60)
ATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGG < SRR4302542.6491693/94‑1 (MQ=60)
GGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTT > SRR4302542.6489278/1‑94 (MQ=60)
GTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTC < SRR4302542.434024/94‑1 (MQ=60)
GTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTC < SRR4302542.4611948/94‑1 (MQ=60)
GTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTC > SRR4302542.5103205/1‑94 (MQ=60)
GTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTC > SRR4302542.2895633/1‑94 (MQ=60)
TCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCA < SRR4302542.3727864/94‑1 (MQ=60)
AGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAA > SRR4302542.40519/1‑94 (MQ=60)
AGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAA < SRR4302542.5758954/94‑1 (MQ=60)
GCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAAT < SRR4302542.5656078/94‑1 (MQ=60)
GCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAAT > SRR4302542.1034889/1‑94 (MQ=60)
GCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAAT < SRR4302542.3653464/94‑1 (MQ=60)
GCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAAT > SRR4302542.770346/1‑94 (MQ=60)
CTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATC < SRR4302542.1341922/94‑1 (MQ=60)
TTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCG < SRR4302542.6956007/94‑1 (MQ=60)
TATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGC > SRR4302542.5718088/1‑94 (MQ=60)
ATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCC < SRR4302542.5404925/94‑1 (MQ=60)
TGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTGCGGGCTTGGTTCATAATCGCCC < SRR4302542.4459977/94‑1 (MQ=60)
TGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCC < SRR4302542.2955420/94‑1 (MQ=60)
GGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGT < SRR4302542.6488904/94‑1 (MQ=60)
GGACAACTCACGTCCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGT < SRR4302542.7036676/94‑1 (MQ=60)
GACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTT > SRR4302542.550251/1‑94 (MQ=60)
CAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCA < SRR4302542.536658/94‑1 (MQ=60)
CAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCA > SRR4302542.5213666/1‑94 (MQ=60)
AACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAA > SRR4302542.4190223/1‑94 (MQ=60)
ACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAAT > SRR4302542.7225483/1‑94 (MQ=60)
ACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAAT > SRR4302542.1452909/1‑94 (MQ=60)
tcgACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATC < SRR4302542.2449380/91‑1 (MQ=60)
CTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATC < SRR4302542.2202118/94‑1 (MQ=60)
CTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATC < SRR4302542.1093199/94‑1 (MQ=60)
TCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCG < SRR4302542.1922459/94‑1 (MQ=60)
TCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCG > SRR4302542.3100635/1‑94 (MQ=60)
GTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTG < SRR4302542.7075260/94‑1 (MQ=60)
GTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTG > SRR4302542.463788/1‑94 (MQ=60)
GTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTG < SRR4302542.7317574/94‑1 (MQ=60)
GTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTG > SRR4302542.3010171/1‑94 (MQ=60)
TGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGG < SRR4302542.6370108/94‑1 (MQ=60)
GCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGC < SRR4302542.2339235/94‑1 (MQ=60)
GTTCGCAGGT‑AACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAAT < SRR4302542.1777486/94‑1 (MQ=60)
CAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCAC < SRR4302542.3219296/94‑1 (MQ=60)
AGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCACACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACC > SRR4302542.789028/1‑94 (MQ=60)
AGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACC < SRR4302542.3277418/94‑1 (MQ=60)
AGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACC < SRR4302542.4393821/94‑1 (MQ=60)
AGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACC > SRR4302542.139459/1‑94 (MQ=60)
GGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCA < SRR4302542.2252215/94‑1 (MQ=60)
GGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCA > SRR4302542.3806648/1‑94 (MQ=60)
GGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCA < SRR4302542.1399511/94‑1 (MQ=60)
GGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCA < SRR4302542.1374277/94‑1 (MQ=60)
TAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGG < SRR4302542.2509227/94‑1 (MQ=60)
AACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTT > SRR4302542.5536590/1‑94 (MQ=60)
AACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTT > SRR4302542.4950993/1‑94 (MQ=60)
ACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTG < SRR4302542.2839913/94‑1 (MQ=60)
GTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCG < SRR4302542.3907835/94‑1 (MQ=60)
GTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCG < SRR4302542.1469648/94‑1 (MQ=60)
GTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCG > SRR4302542.6369547/1‑94 (MQ=60)
GTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCG > SRR4302542.4860220/1‑94 (MQ=60)
TTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGT < SRR4302542.1484205/94‑1 (MQ=60)
TTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGT > SRR4302542.6139337/1‑94 (MQ=60)
TTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGT > SRR4302542.256657/1‑94 (MQ=60)
TTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGT > SRR4302542.5287582/1‑94 (MQ=60)
TCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTA > SRR4302542.2880676/1‑94 (MQ=60)
CAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTAT > SRR4302542.39004/1‑94 (MQ=60)
AGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCATTCAATCGTCTGGCGAATCCACCAGGTTGCGTATG > SRR4302542.6473505/1‑94 (MQ=60)
GCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGT > SRR4302542.1054221/1‑94 (MQ=60)
CTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTT < SRR4302542.3100325/94‑1 (MQ=60)
TCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTG < SRR4302542.6721041/94‑1 (MQ=60)
TCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTG < SRR4302542.3538687/94‑1 (MQ=60)
TCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGCATGTTG < SRR4302542.1380596/94‑1 (MQ=60)
CCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGA > SRR4302542.7352672/1‑94 (MQ=60)
CTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAG < SRR4302542.376857/94‑1 (MQ=60)
CTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAG < SRR4302542.1174481/94‑1 (MQ=60)
CTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAG < SRR4302542.1629710/94‑1 (MQ=60)
TTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGA < SRR4302542.1958356/94‑1 (MQ=60)
TACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAG < SRR4302542.537981/94‑1 (MQ=60)
TACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAG < SRR4302542.2103985/94‑1 (MQ=60)
TACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAG > SRR4302542.277329/1‑94 (MQ=60)
ACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGC > SRR4302542.2302951/1‑94 (MQ=60)
ACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGC < SRR4302542.3733585/94‑1 (MQ=60)
CGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCG > SRR4302542.1842259/1‑94 (MQ=60)
CGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGGATGTTGAGAAGCG > SRR4302542.2813505/1‑94 (MQ=60)
GATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGG < SRR4302542.3139556/94‑1 (MQ=60)
GATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGG < SRR4302542.3342234/94‑1 (MQ=60)
ATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGA > SRR4302542.6608619/1‑94 (MQ=60)
ATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGA < SRR4302542.4706723/94‑1 (MQ=60)
TGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAA > SRR4302542.1687102/1‑94 (MQ=60)
TGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGGCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAA < SRR4302542.4973143/94‑1 (MQ=60)
GTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAA > SRR4302542.3419165/1‑94 (MQ=60)
TGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAAC < SRR4302542.5603553/94‑1 (MQ=60)
GAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACC < SRR4302542.4132371/94‑1 (MQ=60)
GAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACC < SRR4302542.3263806/94‑1 (MQ=60)
GAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACC > SRR4302542.54119/1‑94 (MQ=60)
AATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCA > SRR4302542.6832278/1‑94 (MQ=60)
AATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCA < SRR4302542.5865081/94‑1 (MQ=60)
ATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCAC < SRR4302542.5812142/94‑1 (MQ=60)
TCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACG < SRR4302542.3810125/94‑1 (MQ=60)
CGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGT < SRR4302542.6717496/94‑1 (MQ=60)
CGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGT > SRR4302542.130054/1‑94 (MQ=60)
GGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTT > SRR4302542.2758734/1‑94 (MQ=60)
GCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTC > SRR4302542.2778236/1‑94 (MQ=60)
GCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTC < SRR4302542.3814415/94‑1 (MQ=60)
AAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCG < SRR4302542.1211700/94‑1 (MQ=60)
AAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCG < SRR4302542.2349571/94‑1 (MQ=60)
ACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGG < SRR4302542.7499660/94‑1 (MQ=60)
ACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGG < SRR4302542.6858196/94‑1 (MQ=60)
ACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGG < SRR4302542.1005362/94‑1 (MQ=60)
ACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGCATGTTGAGAAGCGGAAACCACGTTCCGGG < SRR4302542.321088/94‑1 (MQ=60)
ACGAATAGTACGGGCCTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGG > SRR4302542.6729723/1‑94 (MQ=60)
GAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTC > SRR4302542.3938811/1‑94 (MQ=60)
TAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAA > SRR4302542.2632535/1‑94 (MQ=60)
AGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAAC < SRR4302542.6617531/94‑1 (MQ=60)
AGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAAC > SRR4302542.2142096/1‑94 (MQ=60)
GTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACT < SRR4302542.358942/94‑1 (MQ=60)
TACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTT < SRR4302542.1984429/94‑1 (MQ=60)
CGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGGGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCT > SRR4302542.3531482/1‑94 (MQ=60)
GGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTC > SRR4302542.4998979/1‑94 (MQ=60)
GGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCT < SRR4302542.4717348/94‑1 (MQ=60)
GGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCT < SRR4302542.3606406/94‑1 (MQ=60)
GGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCT > SRR4302542.2271683/1‑94 (MQ=60)
GGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGGCAAACTTCTCT > SRR4302542.5203442/1‑94 (MQ=60)
GGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGCTCCGGGTCAAACTTCTCT < SRR4302542.7192599/94‑1 (MQ=60)
GCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAAACACGTTCCGGGTCAAACTTCTCTA > SRR4302542.1986410/1‑94 (MQ=60)
CTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTAC < SRR4302542.3676129/94‑1 (MQ=60)
CTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTAC < SRR4302542.2224590/94‑1 (MQ=60)
CTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTAC > SRR4302542.5426000/1‑94 (MQ=60)
|
GTTCATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTAC > NC_000913/2864998‑2865184
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
