Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,926,421 |
T→C |
A57A (GCT→GCC) |
sdaC → |
putative serine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,926,421 | 0 | T | C | 88.4%
| 685.8
/ 73.5
| 267 | A57A (GCT→GCC) | sdaC | putative serine transporter |
| Reads supporting (aligned to +/- strand): ref base T (13/18); new base C (103/133); total (116/151) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.56e-01 |
Only 100 of 268 total aligned reads displayed.
GGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGT > NC_000913/2926331‑2926513
|
gggCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTAt > 1:2148536/1‑93 (MQ=255)
ggCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATc < 2:6233321/93‑1 (MQ=255)
ggCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATc < 1:734483/93‑1 (MQ=255)
gCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATcc > 2:6024707/1‑93 (MQ=255)
ccTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCt < 2:3773798/93‑1 (MQ=255)
ccTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCt < 2:1885347/93‑1 (MQ=255)
ccTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCt < 2:2566487/93‑1 (MQ=255)
cTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCtt < 2:2415814/93‑1 (MQ=255)
tttACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTg < 2:2763932/93‑1 (MQ=255)
tttACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTg < 2:6553824/93‑1 (MQ=255)
ttACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGc < 2:5844466/93‑1 (MQ=255)
ttACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGc > 2:7237720/1‑93 (MQ=255)
tACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCg < 1:1858495/93‑1 (MQ=255)
cggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGa < 1:7459997/93‑1 (MQ=255)
cggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGa < 1:5947661/93‑1 (MQ=255)
cggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGa > 1:3463603/1‑93 (MQ=255)
ggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGAt < 1:5264277/93‑1 (MQ=255)
gcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATg > 2:3293553/1‑93 (MQ=255)
gcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATg > 1:6609580/1‑93 (MQ=255)
aaTCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGAc > 2:1098761/1‑93 (MQ=255)
aTCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACg > 2:5053763/1‑93 (MQ=255)
tCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGt > 1:1006357/1‑93 (MQ=255)
tCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGt < 1:4018549/93‑1 (MQ=255)
gcgcGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGtttt < 1:3247686/93‑1 (MQ=255)
gcgcGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGtttt > 1:7434588/1‑93 (MQ=255)
gcgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGtttttt < 2:3536488/93‑1 (MQ=255)
gcgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGtttttt < 1:4155942/93‑1 (MQ=255)
cgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTg < 1:565955/93‑1 (MQ=255)
cgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTg < 2:1857178/93‑1 (MQ=255)
cgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTg > 1:2028203/1‑93 (MQ=255)
gggCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGc < 2:713932/93‑1 (MQ=255)
ggCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCt > 1:1840004/1‑93 (MQ=255)
ggCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCt > 1:1650258/1‑93 (MQ=255)
cGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCa < 2:6900540/93‑1 (MQ=255)
nngCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCAc < 2:1369533/91‑1 (MQ=255)
gCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACcg > 1:7209330/1‑93 (MQ=255)
cTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGCTCACGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCAAcgc > 1:6222506/1‑93 (MQ=255)
cTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACcgc < 2:5871602/93‑1 (MQ=255)
cTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACcgc < 2:2288081/93‑1 (MQ=255)
cTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACcgc < 1:1087302/93‑1 (MQ=255)
gTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCgg > 1:4678770/1‑93 (MQ=255)
tCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGcc < 2:3997760/93‑1 (MQ=255)
tCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGcc > 1:4699861/1‑93 (MQ=255)
ccTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCt < 1:2421972/93‑1 (MQ=255)
ccTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCt < 2:4229268/93‑1 (MQ=255)
cTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTg > 2:6799784/1‑93 (MQ=255)
cTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTg > 1:537694/1‑93 (MQ=255)
ccAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACt < 1:6796421/93‑1 (MQ=255)
ccAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACt > 1:144452/1‑93 (MQ=255)
cAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTc < 2:7100492/93‑1 (MQ=255)
cAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTc < 1:4453669/93‑1 (MQ=255)
aaTCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCg > 1:986005/1‑93 (MQ=255)
tCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCt > 1:611311/1‑93 (MQ=255)
cAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCtt < 2:5710726/93‑1 (MQ=255)
cAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCtc > 1:578411/1‑92 (MQ=255)
aaCGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTc < 1:2984641/93‑1 (MQ=255)
aaCGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTc > 1:598985/1‑93 (MQ=255)
aCGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCg > 1:31187/1‑93 (MQ=255)
aCGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCg > 2:4957426/1‑93 (MQ=255)
ggTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTg < 2:15474/93‑1 (MQ=255)
gtgtTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGt < 1:1291614/93‑1 (MQ=255)
gtTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCt < 1:3217477/93‑1 (MQ=255)
ttGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTg > 2:6739740/1‑93 (MQ=255)
ggCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGt > 2:2906673/1‑93 (MQ=255)
gTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaaa > 1:1565884/1‑93 (MQ=255)
gTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaaa < 2:4397530/93‑1 (MQ=255)
gTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaaa > 2:1986212/1‑93 (MQ=255)
aTGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAAc < 2:5085139/93‑1 (MQ=255)
tGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAAcc > 2:3043150/1‑93 (MQ=255)
aTCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCg < 1:49016/93‑1 (MQ=255)
aTCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCg < 2:2116326/93‑1 (MQ=255)
aTCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCg < 1:5510372/93‑1 (MQ=255)
aTCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCg < 1:4614081/93‑1 (MQ=255)
tCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCgg > 2:6332255/1‑93 (MQ=255)
cccGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCggg > 2:1672860/1‑93 (MQ=255)
ccGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGc > 1:2512544/1‑93 (MQ=255)
cGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCg > 2:6610275/1‑93 (MQ=255)
cTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGaa < 2:4114063/93‑1 (MQ=255)
cTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGaa < 1:4764368/93‑1 (MQ=255)
cTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGaa > 2:6184657/1‑93 (MQ=255)
tGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAg > 1:3933385/1‑93 (MQ=255)
tGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAg > 1:4703799/1‑93 (MQ=255)
gATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGa < 1:706159/93‑1 (MQ=255)
atcatcATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGAc < 2:3844289/93‑1 (MQ=255)
tcatcaTGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACa < 1:1964622/93‑1 (MQ=255)
tcatcaTGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACa < 2:4679972/93‑1 (MQ=255)
tcatcaTGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACa < 2:4885492/93‑1 (MQ=255)
tcatcaTGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACa > 2:3574831/1‑93 (MQ=255)
catcatGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACAt < 2:3900487/93‑1 (MQ=255)
catcatGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACAt < 2:5541691/93‑1 (MQ=255)
atcatGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATc < 2:1513720/93‑1 (MQ=255)
atcatGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATc > 1:4895209/1‑93 (MQ=255)
atcatGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATc < 1:6456485/93‑1 (MQ=255)
tcatGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCa > 2:4519950/1‑93 (MQ=255)
tcatGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCa < 2:1316964/93‑1 (MQ=255)
atGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCCGGCGAAGACATCAcc > 1:4995668/1‑93 (MQ=255)
ggCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGa < 2:7344680/93‑1 (MQ=255)
ggCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGa < 2:3128835/93‑1 (MQ=255)
gCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAg < 1:6955920/93‑1 (MQ=255)
tATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAggg > 1:3767305/1‑92 (MQ=255)
|
GGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGT > NC_000913/2926331‑2926513
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGTT > NC_000913/2926328‑2926514
|
GCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCC < SRR4302542.7317884/94‑1 (MQ=60)
CTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCA > SRR4302542.4063588/1‑94 (MQ=60)
TGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTAT > SRR4302542.2167058/1‑94 (MQ=60)
TGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCAT < SRR4302542.5387696/94‑1 (MQ=60)
GGGCCTTTACGGCACGGCAATCGGCGCGGGCGGGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATC > SRR4302542.5109440/1‑94 (MQ=60)
GGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCC < SRR4302542.4989960/94‑1 (MQ=60)
GGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCC < SRR4302542.740849/94‑1 (MQ=60)
GCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCT < SRR4302542.2514586/94‑1 (MQ=60)
CCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTT < SRR4302542.5324080/94‑1 (MQ=60)
CCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTT < SRR4302542.5674047/94‑1 (MQ=60)
CTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCGTGGCCATCCTTG < SRR4302542.4507082/94‑1 (MQ=60)
CTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTG > SRR4302542.1864200/1‑94 (MQ=60)
CTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTG < SRR4302542.7297059/94‑1 (MQ=60)
TTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCG < SRR4302542.5031405/94‑1 (MQ=60)
TTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCG > SRR4302542.1788007/1‑94 (MQ=60)
TACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGT < SRR4302542.1874551/94‑1 (MQ=60)
ACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTT < SRR4302542.4002518/94‑1 (MQ=60)
GCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCC < SRR4302542.3295279/94‑1 (MQ=60)
GCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCC < SRR4302542.6986378/94‑1 (MQ=60)
ACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGA > SRR4302542.3496042/1‑94 (MQ=60)
CGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGAT < SRR4302542.7533074/94‑1 (MQ=60)
CGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGAT < SRR4302542.6005266/94‑1 (MQ=60)
GGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATG > SRR4302542.6674692/1‑94 (MQ=60)
GGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATG < SRR4302542.5315433/94‑1 (MQ=60)
CAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGAC < SRR4302542.4129440/94‑1 (MQ=60)
AATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACG > SRR4302542.4751203/1‑94 (MQ=60)
AATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACG > SRR4302542.4538312/1‑94 (MQ=60)
ATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGT < SRR4302542.1571666/94‑1 (MQ=60)
ATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGT > SRR4302542.1015024/1‑94 (MQ=60)
TCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTT < SRR4302542.4058206/94‑1 (MQ=60)
GGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTT > SRR4302542.7507353/1‑94 (MQ=60)
GCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTT < SRR4302542.3278379/94‑1 (MQ=60)
GCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTT < SRR4302542.7604251/94‑1 (MQ=60)
GCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTG < SRR4302542.4196854/94‑1 (MQ=60)
GCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTG > SRR4302542.2507520/1‑94 (MQ=60)
GCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTG > SRR4302542.2045741/1‑94 (MQ=60)
CGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGC < SRR4302542.570827/94‑1 (MQ=60)
CGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGC < SRR4302542.6711719/94‑1 (MQ=60)
GGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCT > SRR4302542.1664518/1‑94 (MQ=60)
GGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCT > SRR4302542.1855934/1‑94 (MQ=60)
CGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCAC > SRR4302542.7531581/1‑94 (MQ=60)
CGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCAC > SRR4302542.7426145/1‑94 (MQ=60)
CGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCAC > SRR4302542.1611689/1‑94 (MQ=60)
GTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACC > SRR4302542.5266948/1‑94 (MQ=60)
TGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCG > SRR4302542.4854608/1‑94 (MQ=60)
TGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCG < SRR4302542.6353173/94‑1 (MQ=60)
TGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCG > SRR4302542.3572353/1‑94 (MQ=60)
TGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCG > SRR4302542.7280076/1‑94 (MQ=60)
GCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGCTCACGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCAACGC > SRR4302542.6283788/1‑94 (MQ=60)
CTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCG < SRR4302542.7044898/94‑1 (MQ=60)
CTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCG < SRR4302542.1096624/94‑1 (MQ=60)
CTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGCTTTTTGCTCACCGCG > SRR4302542.6717332/1‑94 (MQ=60)
TGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGG > SRR4302542.4724491/1‑94 (MQ=60)
GTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGC > SRR4302542.494022/1‑94 (MQ=60)
TTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCC > SRR4302542.4745736/1‑94 (MQ=60)
TCCTNNCNATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCT < SRR4302542.7164166/94‑1 (MQ=60)
CCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTG > SRR4302542.125869/1‑94 (MQ=60)
CCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTG < SRR4302542.2445521/94‑1 (MQ=60)
CCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTG > SRR4302542.542342/1‑94 (MQ=60)
CCTGCCAATCAACGCCGGTGTTGGCGGTATGAGCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTG < SRR4302542.6124160/94‑1 (MQ=60)
CTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGA > SRR4302542.997080/1‑94 (MQ=60)
TGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGAC > SRR4302542.7190338/1‑94 (MQ=60)
GCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACT > SRR4302542.145661/1‑94 (MQ=60)
CCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTC < SRR4302542.6863254/94‑1 (MQ=60)
CAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCG > SRR4302542.6929513/1‑94 (MQ=60)
CAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCG < SRR4302542.4497360/94‑1 (MQ=60)
CAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCG > SRR4302542.994502/1‑94 (MQ=60)
CAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCG > SRR4302542.3245495/1‑94 (MQ=60)
CAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCG < SRR4302542.5817064/94‑1 (MQ=60)
ATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCT > SRR4302542.325891/1‑94 (MQ=60)
ATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCT < SRR4302542.1809315/94‑1 (MQ=60)
ATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCT > SRR4302542.616570/1‑94 (MQ=60)
TCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTT > SRR4302542.1621166/1‑94 (MQ=60)
TCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTT < SRR4302542.4941942/94‑1 (MQ=60)
TCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTC > SRR4302542.583420/1‑94 (MQ=60)
CAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTC > SRR4302542.604146/1‑94 (MQ=60)
AACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCG < SRR4302542.3013218/94‑1 (MQ=60)
AACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCG > SRR4302542.31465/1‑94 (MQ=60)
AACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCG < SRR4302542.1887482/94‑1 (MQ=60)
GCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTAC > SRR4302542.1232653/1‑94 (MQ=60)
CCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACT < SRR4302542.4321255/94‑1 (MQ=60)
CGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTG < SRR4302542.3193299/94‑1 (MQ=60)
GTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTC < SRR4302542.1302738/94‑1 (MQ=60)
GTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTC < SRR4302542.204158/94‑1 (MQ=60)
GTGTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTC < SRR4302542.5493798/94‑1 (MQ=60)
GTTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTG < SRR4302542.3247931/94‑1 (MQ=60)
TTGGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGG < SRR4302542.2182124/94‑1 (MQ=60)
GGCGGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTA > SRR4302542.3428352/1‑94 (MQ=60)
GGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAA > SRR4302542.1579407/1‑94 (MQ=60)
GGTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAA > SRR4302542.2764/1‑94 (MQ=60)
GTATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAA > SRR4302542.5612525/1‑94 (MQ=60)
TATGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAAC > SRR4302542.2338042/1‑94 (MQ=60)
TGATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCC < SRR4302542.4787276/94‑1 (MQ=60)
GATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGTCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCG < SRR4302542.4150720/94‑1 (MQ=60)
GATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCG > SRR4302542.1383812/1‑94 (MQ=60)
ATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG < SRR4302542.6532468/94‑1 (MQ=60)
ATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG < SRR4302542.5563921/94‑1 (MQ=60)
ATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG < SRR4302542.4659162/94‑1 (MQ=60)
ATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG < SRR4302542.4733855/94‑1 (MQ=60)
ATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG < SRR4302542.5861948/94‑1 (MQ=60)
ATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG > SRR4302542.190119/1‑94 (MQ=60)
ATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG > SRR4302542.939660/1‑94 (MQ=60)
ATCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG < SRR4302542.49419/94‑1 (MQ=60)
TCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGG < SRR4302542.7300182/94‑1 (MQ=60)
TCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGG < SRR4302542.4730687/94‑1 (MQ=60)
TCCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGG < SRR4302542.6282112/94‑1 (MQ=60)
CCCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGC > SRR4302542.2536914/1‑94 (MQ=60)
CCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCG > SRR4302542.751326/1‑94 (MQ=60)
CCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCG < SRR4302542.2161891/94‑1 (MQ=60)
CCGCTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCG < SRR4302542.5853387/94‑1 (MQ=60)
CTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAG < SRR4302542.1055437/94‑1 (MQ=60)
CTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAG < SRR4302542.4810814/94‑1 (MQ=60)
CTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAG > SRR4302542.4749694/1‑94 (MQ=60)
CTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAG > SRR4302542.3972197/1‑94 (MQ=60)
CTGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAG < SRR4302542.20064/94‑1 (MQ=60)
TGATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGA > SRR4302542.6029872/1‑94 (MQ=60)
GATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGAC > SRR4302542.3057939/1‑94 (MQ=60)
GATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGAC < SRR4302542.712268/94‑1 (MQ=60)
GATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGAC < SRR4302542.4711260/94‑1 (MQ=60)
ATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACA < SRR4302542.3129251/94‑1 (MQ=60)
ATCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACA > SRR4302542.1329815/1‑94 (MQ=60)
TCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACAT < SRR4302542.6031808/94‑1 (MQ=60)
TCATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACAT < SRR4302542.1981601/94‑1 (MQ=60)
CATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATC < SRR4302542.4747235/94‑1 (MQ=60)
CATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATC > SRR4302542.6314924/1‑94 (MQ=60)
CATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATC > SRR4302542.4942799/1‑94 (MQ=60)
ATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCA < SRR4302542.6520057/94‑1 (MQ=60)
ATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCA < SRR4302542.3972624/94‑1 (MQ=60)
ATCATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCA > SRR4302542.3601260/1‑94 (MQ=60)
CATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACC < SRR4302542.6238261/94‑1 (MQ=60)
CATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCCGGCGAAGACATCACC > SRR4302542.5044202/1‑94 (MQ=60)
ATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCG > SRR4302542.3891082/1‑94 (MQ=60)
ATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCG < SRR4302542.4680845/94‑1 (MQ=60)
ATGGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCG < SRR4302542.543607/94‑1 (MQ=60)
GGCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAG > SRR4302542.6651771/1‑94 (MQ=60)
GCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGG < SRR4302542.7024263/94‑1 (MQ=60)
GCCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGG < SRR4302542.5584730/94‑1 (MQ=60)
CTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGG > SRR4302542.3804566/1‑94 (MQ=60)
CCATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGT > SRR4302542.1938088/1‑94 (MQ=60)
TATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGTT > SRR4302542.165778/1‑94 (MQ=60)
TATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGTT > SRR4302542.6804002/1‑94 (MQ=60)
CATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGTT > SRR4302542.4901466/1‑94 (MQ=60)
CATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGTT < SRR4302542.5295659/94‑1 (MQ=60)
CATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGTT > SRR4302542.1950945/1‑94 (MQ=60)
CATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGTT > SRR4302542.2346822/1‑94 (MQ=60)
|
GCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGCGAAGACATCACCGAGGTT > NC_000913/2926328‑2926514
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
