Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I1 R1 | 1061 | 294.1 | 15065038 | 98.6% | 14854127 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,960,777 | A→G | S4P (TCC→CCC) L134L (CTT→CTC) |
ppdC ← b2824 ← |
prepilin peptidase dependent protein C hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,960,777 | 0 | A | G | 82.5% | 619.8 / 134.7 | 291 | S4P (TCC→CCC) L134L (CTT→CTC) | ppdC b2824 | prepilin peptidase dependent protein C hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (26/25); new base G (129/111); total (155/136) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.75e-01 | |||||||||||
Only 100 of 295 total aligned reads displayed.
TGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTGTT > NC_000913/2960686‑2960867 | tGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGaa > 2:2399871/1‑93 (MQ=255) ggAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAg < 1:7447071/93‑1 (MQ=255) ggAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAg > 1:2632142/1‑93 (MQ=255) aCCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGa > 2:297426/1‑93 (MQ=255) aCCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGa > 1:864703/1‑93 (MQ=255) cGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACAt > 1:5292656/1‑93 (MQ=255) cGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACAt > 1:3465097/1‑93 (MQ=255) cGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACAt > 2:1539712/1‑93 (MQ=255) gATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATa > 2:6830202/1‑93 (MQ=255) gATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATa > 2:1116500/1‑93 (MQ=255) aCGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGc > 2:3622557/1‑93 (MQ=255) cGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGcc < 2:6480818/93‑1 (MQ=255) gCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGccc > 2:254121/1‑93 (MQ=255) gTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCctct > 1:1466165/1‑93 (MQ=255) gTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCctct > 2:1188385/1‑93 (MQ=255) tGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCctctc < 1:4783808/93‑1 (MQ=255) tGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCctctc < 1:1426996/93‑1 (MQ=255) gACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCctctct < 2:192545/93‑1 (MQ=255) aCAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCtt > 2:217102/1‑93 (MQ=255) aaTCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTc < 2:2225195/93‑1 (MQ=255) aaTCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTc < 1:5615526/93‑1 (MQ=255) aaTCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTc < 1:6557896/93‑1 (MQ=255) atcatcACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCa < 2:505369/93‑1 (MQ=255) atcatcACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCa > 1:1143334/1‑93 (MQ=255) atcatcACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCa < 1:3902839/93‑1 (MQ=255) atcatcACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCa < 1:1314794/93‑1 (MQ=255) atcatcACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCa < 1:4506449/93‑1 (MQ=255) atcatcACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCa < 1:1703569/93‑1 (MQ=255) tcatcaCCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAg > 1:212384/1‑93 (MQ=255) tcaCCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCgg > 2:3947454/1‑93 (MQ=255) caCCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGa > 2:4530126/1‑93 (MQ=255) ccATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACa > 1:2750985/1‑93 (MQ=255) aTCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACaaa > 2:5789370/1‑93 (MQ=255) tCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACaaaa > 1:3019503/1‑93 (MQ=255) tCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACaaaa > 1:3126239/1‑93 (MQ=255) acacCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATc > 1:5444451/1‑93 (MQ=255) cacCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCg > 2:128648/1‑93 (MQ=255) ccATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCt < 2:1751638/93‑1 (MQ=255) ccATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCt < 2:4829064/93‑1 (MQ=255) cATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTc > 1:4983318/1‑93 (MQ=255) aTCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTcc > 2:729564/1‑93 (MQ=255) aTCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTcc < 1:6781985/93‑1 (MQ=255) aTCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCCGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTcc < 1:7305676/93‑1 (MQ=255) tCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCa > 2:3853899/1‑93 (MQ=255) tCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCa < 2:6705078/93‑1 (MQ=255) tCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCa > 2:3766230/1‑93 (MQ=255) tCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCa > 2:2728832/1‑93 (MQ=255) tCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGACATCTCTTTCAGCGGACAAAAATCGCTCCa > 1:4850829/1‑93 (MQ=255) gCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGc < 2:6615142/93‑1 (MQ=255) gCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGc < 2:3385749/93‑1 (MQ=255) cAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCcg > 2:284129/1‑93 (MQ=255) cAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCcg > 2:7018360/1‑93 (MQ=255) aaCATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCcgc > 2:6289364/1‑93 (MQ=255) aaCATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCcgc > 2:6956229/1‑93 (MQ=255) aCATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCcgcg < 2:4011784/93‑1 (MQ=255) aCATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCcgcg < 1:6328927/93‑1 (MQ=255) cATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGt > 1:6033893/1‑93 (MQ=255) aTTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTg > 1:517209/1‑93 (MQ=255) aTTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTg < 1:4890345/93‑1 (MQ=255) ttACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTgg > 1:2943434/1‑93 (MQ=255) ttACCGCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTgg > 1:4701044/1‑93 (MQ=255) tACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGc > 2:3263208/1‑93 (MQ=255) cTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGaa > 1:2184976/1‑93 (MQ=255) tCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGaaa < 2:226912/93‑1 (MQ=255) tCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGaaa > 1:3692143/1‑93 (MQ=255) ggCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGaaaaaa < 1:5688531/93‑1 (MQ=255) ggCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGaaaaaa < 1:7217121/93‑1 (MQ=255) ggCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGaaaaaa > 1:1230432/1‑93 (MQ=255) gCAGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAAc < 2:5294901/93‑1 (MQ=255) aGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAGCaa > 2:4139264/1‑93 (MQ=255) aGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACaa > 1:2671251/1‑93 (MQ=255) ggCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAAt > 2:5710366/1‑93 (MQ=255) ggCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAAt < 2:6322732/93‑1 (MQ=255) cTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGt < 1:2019834/93‑1 (MQ=255) aaGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTc < 1:4346823/93‑1 (MQ=255) aaGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTc > 1:6238644/1‑93 (MQ=255) aaGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTc < 2:1042152/93‑1 (MQ=255) aGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTcc > 1:1572030/1‑93 (MQ=255) aGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTcc > 2:4663300/1‑93 (MQ=255) ttgttgATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCa > 1:1007905/1‑93 (MQ=255) tgttgATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCaa < 1:4072011/93‑1 (MQ=255) tgttgATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCaa < 1:774238/93‑1 (MQ=255) gttgATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAAt < 2:143709/93‑1 (MQ=255) gttgATTCTTCAGGAGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAAt > 2:6439485/1‑93 (MQ=255) tgATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGa < 2:4242345/93‑1 (MQ=255) tgATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGa < 1:2346251/93‑1 (MQ=255) tgATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGa < 2:6089608/93‑1 (MQ=255) gATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGAc < 1:5794629/93‑1 (MQ=255) aTTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACt < 2:1939039/93‑1 (MQ=255) ttcttcAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACtt < 2:776343/93‑1 (MQ=255) tcttcAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTc < 1:2253751/93‑1 (MQ=255) tcttcAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTc < 1:6890106/93‑1 (MQ=255) tcttcAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTc < 1:3371093/93‑1 (MQ=255) tcttcAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTc > 2:4211193/1‑93 (MQ=255) tcttcAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTc > 1:3431350/1‑93 (MQ=255) ttcAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGc < 2:463540/93‑1 (MQ=255) tcAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGcc > 1:3633088/1‑93 (MQ=255) aGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTg > 1:6938451/1‑93 (MQ=255) aGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTg > 1:5001968/1‑93 (MQ=255) ggggAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTGt < 1:4158471/93‑1 (MQ=255) | TGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTGTT > NC_000913/2960686‑2960867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
CTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTGTTCG > NC_000913/2960685‑2960869 | CTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGA > SRR4302542.4158036/1‑94 (MQ=60)CTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGA > SRR4302542.1992661/1‑94 (MQ=60)CTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGA > SRR4302542.5498868/1‑94 (MQ=60)CTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGA < SRR4302542.5712975/94‑1 (MQ=60) TGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAG < SRR4302542.907332/94‑1 (MQ=60) TGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAG > SRR4302542.2657567/1‑94 (MQ=60) GGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGC < SRR4302542.7519981/94‑1 (MQ=60) GGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGC < SRR4302542.1365332/94‑1 (MQ=60) AACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGA > SRR4302542.3715026/1‑94 (MQ=60) AACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGA > SRR4302542.872150/1‑94 (MQ=60) CCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACA < SRR4302542.120847/94‑1 (MQ=60) CCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCAGGGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACA > SRR4302542.2440218/1‑94 (MQ=60) CCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACAT > SRR4302542.3022727/1‑94 (MQ=60) CCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACAT > SRR4302542.3497548/1‑94 (MQ=60) CCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACAT > SRR4302542.5344095/1‑94 (MQ=60) CGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATA < SRR4302542.3182100/94‑1 (MQ=60) TAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACG < SRR4302542.3434030/94‑1 (MQ=60) AACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGC > SRR4302542.4935807/1‑94 (MQ=60) AACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGC > SRR4302542.5062683/1‑94 (MQ=60) CGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCC < SRR4302542.3098847/94‑1 (MQ=60) CAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTC < SRR4302542.5133358/94‑1 (MQ=60) CAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTC > SRR4302542.4736357/1‑94 (MQ=60) AGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCT < SRR4302542.1574831/94‑1 (MQ=60) AGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCT > SRR4302542.6731087/1‑94 (MQ=60) AGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCT > SRR4302542.149183/1‑94 (MQ=60) AGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCT > SRR4302542.1478823/1‑94 (MQ=60) GTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTC < SRR4302542.27210/94‑1 (MQ=60) GTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTC < SRR4302542.766037/94‑1 (MQ=60) TGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCT < SRR4302542.4830436/94‑1 (MQ=60) TGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCT < SRR4302542.1439347/94‑1 (MQ=60) ACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTT < SRR4302542.5810705/94‑1 (MQ=60) AATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCA < SRR4302542.5696209/94‑1 (MQ=60) AATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCA > SRR4302542.1153122/1‑94 (MQ=60) AATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCA < SRR4302542.5670081/94‑1 (MQ=60) AATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCA < SRR4302542.6622535/94‑1 (MQ=60) ATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAG < SRR4302542.3941362/94‑1 (MQ=60) ATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAG < SRR4302542.1326126/94‑1 (MQ=60) ATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAG > SRR4302542.7375373/1‑94 (MQ=60) ATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAG > SRR4302542.214208/1‑94 (MQ=60) ATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAG < SRR4302542.4550622/94‑1 (MQ=60) ATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAG < SRR4302542.1718335/94‑1 (MQ=60) TCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGC > SRR4302542.3772102/1‑94 (MQ=60) TCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGC > SRR4302542.803042/1‑94 (MQ=60) CATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAATGCCCTCTCTTTCAGCG < SRR4302542.4325921/94‑1 (MQ=60) CATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCG > SRR4302542.1471873/1‑94 (MQ=60) ATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGG > SRR4302542.6703920/1‑94 (MQ=60) ATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGG > SRR4302542.4760917/1‑94 (MQ=60) TCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGA > SRR4302542.7419946/1‑94 (MQ=60) CACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGAC > SRR4302542.5925627/1‑94 (MQ=60) CACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGAC > SRR4302542.651123/1‑94 (MQ=60) CACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGAC > SRR4302542.4904641/1‑94 (MQ=60) ACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACA > SRR4302542.2777505/1‑94 (MQ=60) ACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACA > SRR4302542.3520846/1‑94 (MQ=60) CATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAA < SRR4302542.5048560/94‑1 (MQ=60) CATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAA < SRR4302542.3081527/94‑1 (MQ=60) CATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAA < SRR4302542.2675212/94‑1 (MQ=60) CATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAA > SRR4302542.2938624/1‑94 (MQ=60) ATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAA > SRR4302542.3048345/1‑94 (MQ=60) ATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAA < SRR4302542.2224341/94‑1 (MQ=60) ATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAA > SRR4302542.3155973/1‑94 (MQ=60) TCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAA > SRR4302542.6961236/1‑94 (MQ=60) TCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAA > SRR4302542.7089186/1‑94 (MQ=60) CAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAAT > SRR4302542.5008719/1‑94 (MQ=60) AACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATC > SRR4302542.5787901/1‑94 (MQ=60) AACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATC > SRR4302542.3678891/1‑94 (MQ=60) AACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATC > SRR4302542.5497343/1‑94 (MQ=60) CCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTC > SRR4302542.6274940/1‑94 (MQ=60) CCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTC > SRR4302542.5031677/1‑94 (MQ=60) CCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTC < SRR4302542.441271/94‑1 (MQ=60) CATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCC < SRR4302542.2105427/94‑1 (MQ=60) CATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCC < SRR4302542.898948/94‑1 (MQ=60) ATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCA < SRR4302542.2574759/94‑1 (MQ=60) ATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCA < SRR4302542.6848697/94‑1 (MQ=60) ATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGACATCTCTTTCAGCGGACAAAAATCGCTCCA > SRR4302542.4898061/1‑94 (MQ=60) ATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCCGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCA < SRR4302542.7377243/94‑1 (MQ=60) ATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCA > SRR4302542.1990633/1‑94 (MQ=60) CGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGC < SRR4302542.3942932/94‑1 (MQ=60) GCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCC < SRR4302542.4865455/94‑1 (MQ=60) GCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCC < SRR4302542.5374501/94‑1 (MQ=60) GCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCC < SRR4302542.2251155/94‑1 (MQ=60) CCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCG > SRR4302542.4956149/1‑94 (MQ=60) CAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGC < SRR4302542.3430437/94‑1 (MQ=60) CAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGC > SRR4302542.2146552/1‑94 (MQ=60) ACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGT < SRR4302542.6391285/94‑1 (MQ=60) ACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGT > SRR4302542.6617559/1‑94 (MQ=60) ACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGT > SRR4302542.6092307/1‑94 (MQ=60) ACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGAGT > SRR4302542.188313/1‑94 (MQ=60) CATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTG > SRR4302542.521690/1‑94 (MQ=60) ATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGG < SRR4302542.4937910/94‑1 (MQ=60) ATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGG > SRR4302542.2971619/1‑94 (MQ=60) ATTACCGCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGG > SRR4302542.4746928/1‑94 (MQ=60) TTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGC < SRR4302542.2124961/94‑1 (MQ=60) TTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGC < SRR4302542.2190552/94‑1 (MQ=60) ACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGA > SRR4302542.6919264/1‑94 (MQ=60) ACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGA < SRR4302542.3488026/94‑1 (MQ=60) ACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGA > SRR4302542.5727355/1‑94 (MQ=60) CCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAA > SRR4302542.2203798/1‑94 (MQ=60) CTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAA > SRR4302542.3728689/1‑94 (MQ=60) CTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAACCGCGTGGCCAAA > SRR4302542.1177221/1‑94 (MQ=60) TCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAA < SRR4302542.4252794/94‑1 (MQ=60) CCGGCA‑GGCTAAGGCCTTGTGGATTCTTCAGGGGAGCTGACATAGCGCCCTCTCTTTCAGCGGACAAAAACCGCTCCAGCCGCGTGGCGAAAAA < SRR4302542.824225/94‑1 (MQ=60) CGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAA > SRR4302542.1717376/1‑94 (MQ=60) CGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAA > SRR4302542.1241014/1‑94 (MQ=60) GGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAAC < SRR4302542.7287924/94‑1 (MQ=60) GGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAAC < SRR4302542.5743772/94‑1 (MQ=60) GGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAAC < SRR4302542.1399306/94‑1 (MQ=60) GCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACA < SRR4302542.4083413/94‑1 (MQ=60) CA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAA > SRR4302542.1252425/1‑94 (MQ=60) CA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAA < SRR4302542.882708/94‑1 (MQ=60) CA‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAA > SRR4302542.2697027/1‑94 (MQ=60) A‑GGCTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAAT > SRR4302542.4146304/1‑94 (MQ=60) CTAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTT < SRR4302542.1634867/94‑1 (MQ=60) CTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTT > SRR4302542.6160546/1‑94 (MQ=60) CTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTT < SRR4302542.2037303/94‑1 (MQ=60) CTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTT > SRR4302542.5038823/1‑94 (MQ=60) TAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTT > SRR4302542.5660926/1‑94 (MQ=60) TAAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTT < SRR4302542.3526144/94‑1 (MQ=60) AAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTC > SRR4302542.6300060/1‑94 (MQ=60) AAAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTC < SRR4302542.1260515/94‑1 (MQ=60) AAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCC < SRR4302542.4389520/94‑1 (MQ=60) AAGCCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCC > SRR4302542.1585607/1‑94 (MQ=60) AAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCC > SRR4302542.5260621/1‑94 (MQ=60) CCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATC > SRR4302542.2766941/1‑94 (MQ=60) CCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATC > SRR4302542.2334737/1‑94 (MQ=60) CCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATC > SRR4302542.3733655/1‑94 (MQ=60) CCTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATC > SRR4302542.2287905/1‑94 (MQ=60) CTTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCA > SRR4302542.1016587/1‑94 (MQ=60) TTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAA < SRR4302542.6350289/94‑1 (MQ=60) TTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAA > SRR4302542.4392205/1‑94 (MQ=60) TTGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAA > SRR4302542.4195665/1‑94 (MQ=60) TTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAA < SRR4302542.3184922/94‑1 (MQ=60) TGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAAT > SRR4302542.2687795/1‑94 (MQ=60) TGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAAT < SRR4302542.692100/94‑1 (MQ=60) TGTTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAAT < SRR4302542.4112162/94‑1 (MQ=60) TGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAAT < SRR4302542.780924/94‑1 (MQ=60) TGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAAT < SRR4302542.145286/94‑1 (MQ=60) GTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATG > SRR4302542.4750501/1‑94 (MQ=60) TTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGA > SRR4302542.6319046/1‑94 (MQ=60) TTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGA < SRR4302542.5289036/94‑1 (MQ=60) TTGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGA < SRR4302542.4691772/94‑1 (MQ=60) TGATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGAC < SRR4302542.2366346/94‑1 (MQ=60) GATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACT < SRR4302542.5850871/94‑1 (MQ=60) ATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTT < SRR4302542.7553799/94‑1 (MQ=60) ATTCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTT < SRR4302542.7466765/94‑1 (MQ=60) ATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTT > SRR4302542.283860/1‑94 (MQ=60) TTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTC > SRR4302542.3463478/1‑94 (MQ=60) TCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCG < SRR4302542.3402770/94‑1 (MQ=60) TCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCG < SRR4302542.6957774/94‑1 (MQ=60) TCTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCG < SRR4302542.2273132/94‑1 (MQ=60) CTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGC < SRR4302542.7139158/94‑1 (MQ=60) CTTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGC > SRR4302542.2999534/1‑94 (MQ=60) TTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCC > SRR4302542.5443241/1‑94 (MQ=60) TTCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCC > SRR4302542.4875997/1‑94 (MQ=60) TTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCC > SRR4302542.3666941/1‑94 (MQ=60) TCAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCT < SRR4302542.563425/94‑1 (MQ=60) CAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTG < SRR4302542.1062948/94‑1 (MQ=60) CAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTG < SRR4302542.7331209/94‑1 (MQ=60) CAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTG > SRR4302542.7006618/1‑94 (MQ=60) CAGGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTG > SRR4302542.5050556/1‑94 (MQ=60) AGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTGT > SRR4302542.7003702/1‑94 (MQ=60) GGGGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTGTT < SRR4302542.4199414/94‑1 (MQ=60) GGAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTGTTCG < SRR4302542.2758253/94‑1 (MQ=60) | CTGGAAACCCGATAACGCAGTGACAATCATCACCATCAACACCATCGCCAACATTACCTCCGGCA‑GGCTAAAGCCTTGTTGATTCTTCAGGGAAGCTGACATAACGCCCTCTCTTTCAGCGGACAAAAATCGCTCCAGCCGCGTGGCGAAAAAACAATGTTTCCATCAATGACTTCGCCTGTTCG > NC_000913/2960685‑2960869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |