Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,967,341 T→C intergenic (‑342/‑343) ygdP ← / → mutH putative invasion protein/methyl‑directed mismatch repair

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,967,3410TC84.7% 666.2 / 103.9 287intergenic (‑342/‑343)ygdP/mutHputative invasion protein/methyl‑directed mismatch repair
Reads supporting (aligned to +/- strand):  ref base T (27/17);  new base C (140/103);  total (167/120)
Fisher's exact test for biased strand distribution p-value = 7.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 287 total aligned reads displayed.

AAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCAC  >  NC_000913/2967251‑2967430
                                                                                          |                                                                                         
aaaaTATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTg                                                                                         >  1:910573/1‑93 (MQ=255)
aaaaTATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTg                                                                                         <  2:1210452/93‑1 (MQ=255)
aaaaTATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTg                                                                                         <  2:6120325/93‑1 (MQ=255)
 aaaTATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTgg                                                                                        >  1:5122257/1‑93 (MQ=255)
 aaaTATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTgg                                                                                        <  2:6796305/93‑1 (MQ=255)
 aaaTATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTgg                                                                                        >  2:5223811/1‑93 (MQ=255)
  aaTATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGc                                                                                       <  1:2124499/93‑1 (MQ=255)
  aaTATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGc                                                                                       >  1:3476475/1‑93 (MQ=255)
   atatTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCg                                                                                      >  2:5992507/1‑93 (MQ=255)
      ttCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGaaa                                                                                   <  1:6985693/93‑1 (MQ=255)
       tCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAg                                                                                  <  1:5457336/93‑1 (MQ=255)
       tCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAg                                                                                  >  2:6403606/1‑93 (MQ=255)
         aTTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGAt                                                                                <  2:2893337/93‑1 (MQ=255)
          ttATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATc                                                                               >  1:1933211/1‑93 (MQ=255)
          ttATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATc                                                                               <  2:4404578/93‑1 (MQ=255)
          ttATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATc                                                                               >  2:4026425/1‑93 (MQ=255)
          ttATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATc                                                                               <  2:828681/93‑1 (MQ=255)
          ttATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATc                                                                               >  1:2732443/1‑93 (MQ=255)
            aTCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGCCCCAGGTCACCCCTCTCATTTACGGGCTGGCGAAAGATCaa                                                                             <  1:3660439/93‑1 (MQ=255)
            aTCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCaa                                                                             <  2:211643/93‑1 (MQ=255)
             tCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAAc                                                                            <  2:5085852/93‑1 (MQ=255)
              cAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAAcc                                                                           <  1:5075218/93‑1 (MQ=255)
              cAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAAcc                                                                           <  1:1042187/93‑1 (MQ=255)
                gTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCaa                                                                         >  1:2802396/1‑93 (MQ=255)
                gTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCaa                                                                         >  2:7182166/1‑93 (MQ=255)
                gTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCaa                                                                         <  1:3720775/93‑1 (MQ=255)
                gTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCaa                                                                         >  2:652619/1‑93 (MQ=255)
                 tCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAAt                                                                        >  2:7314332/1‑93 (MQ=255)
                  cAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATg                                                                       <  1:5680051/93‑1 (MQ=255)
                   aaTGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGc                                                                      >  2:1705965/1‑93 (MQ=255)
                   aaTGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGc                                                                      >  2:2665008/1‑93 (MQ=255)
                   aaTGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGc                                                                      <  2:2400928/93‑1 (MQ=255)
                     tGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCg                                                                    >  2:5583433/1‑93 (MQ=255)
                     tGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCg                                                                    >  1:2913137/1‑93 (MQ=255)
                        aTTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTAt                                                                 >  1:42120/1‑93 (MQ=255)
                        aTTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTAt                                                                 >  1:456213/1‑93 (MQ=255)
                         ttACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTAtt                                                                <  1:6815490/93‑1 (MQ=255)
                         ttACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTAtt                                                                <  2:1566935/93‑1 (MQ=255)
                          tACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTAttt                                                               <  1:440038/93‑1 (MQ=255)
                          tACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTAttt                                                               >  1:1604400/1‑93 (MQ=255)
                           aCATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTa                                                              <  1:7440656/93‑1 (MQ=255)
                              tGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCGATGCCGTATTTATcc                                                           <  1:7121208/93‑1 (MQ=255)
                              tGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATcc                                                           >  2:6866777/1‑93 (MQ=255)
                              tGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATcc                                                           >  2:4253640/1‑93 (MQ=255)
                                tAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCcac                                                         >  2:925561/1‑93 (MQ=255)
                                 aaTTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCcaca                                                        <  2:2548941/93‑1 (MQ=255)
                                   ttttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGa                                                      >  2:3428045/1‑93 (MQ=255)
                                    ttttGTAATGAAAAAGAGTAATTCGTGACCCAGGGCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGGATTTTTCCACAGaa                                                     >  1:3003860/1‑93 (MQ=255)
                                    tttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGaa                                                     <  1:410419/93‑1 (MQ=255)
                                     ttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAt                                                    >  1:1066174/1‑93 (MQ=255)
                                     ttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAt                                                    >  1:6598337/1‑93 (MQ=255)
                                     ttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAt                                                    <  1:6340696/93‑1 (MQ=255)
                                      tAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAtg                                                   <  2:1049688/93‑1 (MQ=255)
                                       aGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAtgt                                                  <  2:5336868/93‑1 (MQ=255)
                                       aGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAtgt                                                  <  2:4664319/93‑1 (MQ=255)
                                         tAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGc                                                >  2:3174750/1‑93 (MQ=255)
                                          aaTGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGcc                                               >  1:5446475/1‑93 (MQ=255)
                                          aaTGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGcc                                               >  1:2321240/1‑93 (MQ=255)
                                            tGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCAc                                             >  1:3968155/1‑93 (MQ=255)
                                            tGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCAc                                             >  1:5880210/1‑93 (MQ=255)
                                             gAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCTGTATTTATCCACAGAATGTGCCANt                                            >  2:7007325/1‑93 (MQ=255)
                                               aaaaGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTaa                                          >  1:3408410/1‑93 (MQ=255)
                                                aaaGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAg                                         >  2:453847/1‑93 (MQ=255)
                                                 aaGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGt                                        >  2:5897466/1‑93 (MQ=255)
                                                 aaGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGt                                        >  1:2987964/1‑93 (MQ=255)
                                                 aaGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGt                                        <  2:1971899/93‑1 (MQ=255)
                                                   gagTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTa                                      <  1:1696402/93‑1 (MQ=255)
                                                   gagTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTa                                      <  1:3582408/93‑1 (MQ=255)
                                                    agTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTaa                                     <  1:2600426/93‑1 (MQ=255)
                                                    agTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTaa                                     <  1:3298634/93‑1 (MQ=255)
                                                     gTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAg                                    >  2:7427191/1‑93 (MQ=255)
                                                      tAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGc                                   <  2:232032/93‑1 (MQ=255)
                                                      tAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGc                                   <  1:4924945/93‑1 (MQ=255)
                                                          tCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTg                               <  1:298341/93‑1 (MQ=255)
                                                           cGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGa                              <  1:1294757/93‑1 (MQ=255)
                                                             tGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAGAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAAc                            <  2:2503174/93‑1 (MQ=255)
                                                             tGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAAc                            >  2:3247258/1‑93 (MQ=255)
                                                              gACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAAcc                           <  1:7531490/93‑1 (MQ=255)
                                                               aCCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCa                          >  2:3614333/1‑93 (MQ=255)
                                                               aCCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCa                          <  2:2936022/93‑1 (MQ=255)
                                                                cccAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCAc                         >  1:4781119/1‑93 (MQ=255)
                                                                cccAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCAc                         >  1:1428212/1‑93 (MQ=255)
                                                                   aGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTaa                      >  2:2795719/1‑93 (MQ=255)
                                                                   aGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTaa                      >  1:6053120/1‑93 (MQ=255)
                                                                     gTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTaaaa                    >  1:5268472/1‑93 (MQ=255)
                                                                      tCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTaaaaa                   <  2:5377331/93‑1 (MQ=255)
                                                                       cactCCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAAc                  <  2:2856290/93‑1 (MQ=255)
                                                                        acacCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACt                 <  2:6209995/93‑1 (MQ=255)
                                                                        acacCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACt                 >  2:3914834/1‑93 (MQ=255)
                                                                         cacCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTg                >  2:3593650/1‑93 (MQ=255)
                                                                         cacCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTg                <  1:3223584/93‑1 (MQ=255)
                                                                          acCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTga               >  2:1650435/1‑92 (MQ=255)
                                                                          acCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATATATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTgg               >  2:5687908/1‑93 (MQ=255)
                                                                             tctcATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGt            <  2:5009792/93‑1 (MQ=255)
                                                                              ctcATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGtt           <  2:4388586/93‑1 (MQ=255)
                                                                               tcATTTACGGGTTGGCGAGAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGttt          <  2:6703718/93‑1 (MQ=255)
                                                                                cATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtc         <  1:1823241/93‑1 (MQ=255)
                                                                                cATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtc         <  1:2460612/93‑1 (MQ=255)
                                                                                 aTTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtcg        >  1:6684958/1‑93 (MQ=255)
                                                                                     aCGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGc    <  1:7416315/93‑1 (MQ=255)
                                                                                          |                                                                                         
AAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCAC  >  NC_000913/2967251‑2967430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCA  >  NC_000913/2967249‑2967434
                                                                                            |                                                                                             
TTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCT                                                                                              <  SRR4302542.5278935/94‑1 (MQ=60)
 TAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTG                                                                                             >  SRR4302542.918424/1‑94 (MQ=60)
 TAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTG                                                                                             <  SRR4302542.2727441/94‑1 (MQ=60)
 TAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTG                                                                                             >  SRR4302542.1891270/1‑94 (MQ=60)
  AAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGG                                                                                            <  SRR4302542.5724850/94‑1 (MQ=60)
  AAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGG                                                                                            >  SRR4302542.2585206/1‑94 (MQ=60)
  AAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGG                                                                                            >  SRR4302542.5171999/1‑94 (MQ=60)
   AAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGC                                                                                           >  SRR4302542.3509016/1‑94 (MQ=60)
   AAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGC                                                                                           >  SRR4302542.7605696/1‑94 (MQ=60)
   AAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGC                                                                                           >  SRR4302542.20711/1‑94 (MQ=60)
    AATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCG                                                                                          <  SRR4302542.2142833/94‑1 (MQ=60)
      TATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAA                                                                                        >  SRR4302542.224412/1‑94 (MQ=60)
       ATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAA                                                                                       <  SRR4302542.6025117/94‑1 (MQ=60)
       ATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAA                                                                                       >  SRR4302542.6887331/1‑94 (MQ=60)
        TTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAG                                                                                      <  SRR4302542.7054309/94‑1 (MQ=60)
        TTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAG                                                                                      <  SRR4302542.1431796/94‑1 (MQ=60)
         TCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGA                                                                                     <  SRR4302542.5510351/94‑1 (MQ=60)
          CATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGAT                                                                                    >  SRR4302542.153376/1‑94 (MQ=60)
          CATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGAT                                                                                    >  SRR4302542.4972942/1‑94 (MQ=60)
          CATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGAT                                                                                    <  SRR4302542.2953718/94‑1 (MQ=60)
          CATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGAT                                                                                    <  SRR4302542.2864943/94‑1 (MQ=60)
           ATTATCAGTCGATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATC                                                                                   >  SRR4302542.2712732/1‑94 (MQ=60)
           ATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATC                                                                                   >  SRR4302542.1949911/1‑94 (MQ=60)
           ATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATC                                                                                   >  SRR4302542.1328130/1‑94 (MQ=60)
           ATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATC                                                                                   >  SRR4302542.2758806/1‑94 (MQ=60)
           ATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATC                                                                                   >  SRR4302542.1263644/1‑94 (MQ=60)
            TTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCA                                                                                  >  SRR4302542.6661772/1‑94 (MQ=60)
            TTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCA                                                                                  <  SRR4302542.3012802/94‑1 (MQ=60)
              ATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGCCCCAGGTCACCCCTCTCATTTACGGGCTGGCGAAAGATCAAC                                                                                <  SRR4302542.3694943/94‑1 (MQ=60)
                CAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCA                                                                              <  SRR4302542.5124538/94‑1 (MQ=60)
                CAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCA                                                                              <  SRR4302542.1051134/94‑1 (MQ=60)
                 AGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAA                                                                             >  SRR4302542.2829380/1‑94 (MQ=60)
                 AGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAA                                                                             >  SRR4302542.5865239/1‑94 (MQ=60)
                  GTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAAT                                                                            <  SRR4302542.436422/94‑1 (MQ=60)
                  GTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAAT                                                                            <  SRR4302542.1806492/94‑1 (MQ=60)
                  GTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAAT                                                                            <  SRR4302542.1740546/94‑1 (MQ=60)
                  GTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAAT                                                                            <  SRR4302542.3757587/94‑1 (MQ=60)
                  GTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAAT                                                                            >  SRR4302542.3917101/1‑94 (MQ=60)
                    CAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGC                                                                          <  SRR4302542.5735204/94‑1 (MQ=60)
                     AATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCC                                                                         <  SRR4302542.6477796/94‑1 (MQ=60)
                      ATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCG                                                                        >  SRR4302542.2941077/1‑94 (MQ=60)
                       TGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGT                                                                       >  SRR4302542.5505588/1‑94 (MQ=60)
                         CATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTAT                                                                     >  SRR4302542.460157/1‑94 (MQ=60)
                         CATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTAT                                                                     >  SRR4302542.42488/1‑94 (MQ=60)
                          ATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATT                                                                    >  SRR4302542.2739113/1‑94 (MQ=60)
                          ATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATT                                                                    <  SRR4302542.3972190/94‑1 (MQ=60)
                          ATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATT                                                                    >  SRR4302542.3241555/1‑94 (MQ=60)
                           TTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTT                                                                   <  SRR4302542.6882491/94‑1 (MQ=60)
                           TTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTT                                                                   >  SRR4302542.5505302/1‑94 (MQ=60)
                           TTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTT                                                                   >  SRR4302542.1618258/1‑94 (MQ=60)
                            TACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTA                                                                  >  SRR4302542.754558/1‑94 (MQ=60)
                            TACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTA                                                                  >  SRR4302542.1486052/1‑94 (MQ=60)
                            TACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTA                                                                  <  SRR4302542.443854/94‑1 (MQ=60)
                             ACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTAT                                                                 <  SRR4302542.7513516/94‑1 (MQ=60)
                             ACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTAT                                                                 >  SRR4302542.4516596/1‑94 (MQ=60)
                             ACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTAT                                                                 <  SRR4302542.1213430/94‑1 (MQ=60)
                             ACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTAT                                                                 <  SRR4302542.3626152/94‑1 (MQ=60)
                              CATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATC                                                                >  SRR4302542.4093539/1‑94 (MQ=60)
                               ATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCC                                                               >  SRR4302542.3582281/1‑94 (MQ=60)
                                TGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCGATGCCGTATTTATCCA                                                              <  SRR4302542.7191104/94‑1 (MQ=60)
                                   AATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAG                                                           <  SRR4302542.2969386/94‑1 (MQ=60)
                                     TTTTTGTAATGAAAAAGAGTAATTCGTGACCCAGGGCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGGATTTTTCCACAGAA                                                         >  SRR4302542.3032590/1‑94 (MQ=60)
                                      TTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAT                                                        >  SRR4302542.1075335/1‑94 (MQ=60)
                                      TTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAT                                                        >  SRR4302542.6663346/1‑94 (MQ=60)
                                      TTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAT                                                        <  SRR4302542.413955/94‑1 (MQ=60)
                                       TTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATG                                                       >  SRR4302542.3330728/1‑94 (MQ=60)
                                       TTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATG                                                       <  SRR4302542.6403161/94‑1 (MQ=60)
                                         AGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTG                                                     >  SRR4302542.185215/1‑94 (MQ=60)
                                         AGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTG                                                     <  SRR4302542.5396352/94‑1 (MQ=60)
                                           TAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCC                                                   >  SRR4302542.5499385/1‑94 (MQ=60)
                                           TAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCC                                                   >  SRR4302542.347184/1‑94 (MQ=60)
                                           TAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCC                                                   >  SRR4302542.2341139/1‑94 (MQ=60)
                                           NNATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCC                                                   <  SRR4302542.3455171/94‑1 (MQ=60)
                                             ATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCAC                                                 >  SRR4302542.5937219/1‑94 (MQ=60)
                                             ATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCAC                                                 >  SRR4302542.5929553/1‑94 (MQ=60)
                                             ATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCAC                                                 >  SRR4302542.4007324/1‑94 (MQ=60)
                                               GAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTA                                               >  SRR4302542.2432993/1‑94 (MQ=60)
                                                AAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAA                                              >  SRR4302542.3440357/1‑94 (MQ=60)
                                                AAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAA                                              >  SRR4302542.7200670/1‑94 (MQ=60)
                                                 AAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAG                                             >  SRR4302542.2543078/1‑94 (MQ=60)
                                                  AAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGT                                            >  SRR4302542.7187115/1‑94 (MQ=60)
                                                  AAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGT                                            >  SRR4302542.3016570/1‑94 (MQ=60)
                                                  AAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGT                                            >  SRR4302542.4611046/1‑94 (MQ=60)
                                                   AAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTT                                           >  SRR4302542.7511634/1‑94 (MQ=60)
                                                    AGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTA                                          <  SRR4302542.2204782/94‑1 (MQ=60)
                                                     GAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAA                                         <  SRR4302542.1711101/94‑1 (MQ=60)
                                                     GAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAA                                         <  SRR4302542.3615825/94‑1 (MQ=60)
                                                      AGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAG                                        <  SRR4302542.3257548/94‑1 (MQ=60)
                                                      AGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAG                                        <  SRR4302542.6839676/94‑1 (MQ=60)
                                                      AGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAG                                        <  SRR4302542.2625584/94‑1 (MQ=60)
                                                      AGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAG                                        <  SRR4302542.3329753/94‑1 (MQ=60)
                                                       GTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGC                                       >  SRR4302542.3388386/1‑94 (MQ=60)
                                                        TAATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCA                                      <  SRR4302542.4972820/94‑1 (MQ=60)
                                                          ATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACT                                    >  SRR4302542.905102/1‑94 (MQ=60)
                                                          ATTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACT                                    <  SRR4302542.7161470/94‑1 (MQ=60)
                                                           TTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTG                                   <  SRR4302542.626562/94‑1 (MQ=60)
                                                           TTCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTG                                   <  SRR4302542.5357425/94‑1 (MQ=60)
                                                            TCGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGA                                  <  SRR4302542.300943/94‑1 (MQ=60)
                                                             CGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAA                                 >  SRR4302542.6889554/1‑94 (MQ=60)
                                                             CGTGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAA                                 <  SRR4302542.1305905/94‑1 (MQ=60)
                                                               TGACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACC                               >  SRR4302542.753888/1‑94 (MQ=60)
                                                                GACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCA                              <  SRR4302542.7605533/94‑1 (MQ=60)
                                                                GACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCA                              >  SRR4302542.2461545/1‑94 (MQ=60)
                                                                 ACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCAC                             >  SRR4302542.1440568/1‑94 (MQ=60)
                                                                 ACCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCAC                             >  SRR4302542.4827722/1‑94 (MQ=60)
                                                                  CCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACT                            >  SRR4302542.931418/1‑94 (MQ=60)
                                                                  CCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACT                            >  SRR4302542.6379219/1‑94 (MQ=60)
                                                                  CCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACT                            >  SRR4302542.3735469/1‑94 (MQ=60)
                                                                  CCCAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACT                            >  SRR4302542.4815697/1‑94 (MQ=60)
                                                                   CCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTA                           >  SRR4302542.513210/1‑94 (MQ=60)
                                                                    CAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAA                          <  SRR4302542.7278083/94‑1 (MQ=60)
                                                                    CAGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAA                          >  SRR4302542.6111706/1‑94 (MQ=60)
                                                                     AGGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAA                         >  SRR4302542.3290809/1‑94 (MQ=60)
                                                                      GGTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAA                        >  SRR4302542.5319672/1‑94 (MQ=60)
                                                                       GTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAA                       <  SRR4302542.4554933/94‑1 (MQ=60)
                                                                       GTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAA                       <  SRR4302542.5639230/94‑1 (MQ=60)
                                                                       GTCACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAA                       >  SRR4302542.1629281/1‑94 (MQ=60)
                                                                        TCACCCCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAAC                      <  SRR4302542.4058947/94‑1 (MQ=60)
                                                                         CACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACT                     >  SRR4302542.3022581/1‑94 (MQ=60)
                                                                         CACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACG                     >  SRR4302542.3022580/1‑94 (MQ=60)
                                                                         CACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACT                     >  SRR4302542.3122800/1‑94 (MQ=60)
                                                                         CACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACT                     >  SRR4302542.6671695/1‑94 (MQ=60)
                                                                          ACACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTG                    >  SRR4302542.4178126/1‑94 (MQ=60)
                                                                           CACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGG                   <  SRR4302542.5187094/94‑1 (MQ=60)
                                                                           CACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGG                   <  SRR4302542.3254090/94‑1 (MQ=60)
                                                                           CACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGG                   <  SRR4302542.2785794/94‑1 (MQ=60)
                                                                            ACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGA                  >  SRR4302542.4996340/1‑94 (MQ=60)
                                                                            ACCTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGA                  <  SRR4302542.5165670/94‑1 (MQ=60)
                                                                             CCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAG                 >  SRR4302542.531062/1‑94 (MQ=60)
                                                                              CTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGT                >  SRR4302542.2923009/1‑94 (MQ=60)
                                                                              CTCTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGT                >  SRR4302542.282633/1‑94 (MQ=60)
                                                                                CTCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTT              <  SRR4302542.6749320/94‑1 (MQ=60)
                                                                                 TCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTC             >  SRR4302542.4207143/1‑94 (MQ=60)
                                                                                 TCATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTC             <  SRR4302542.4436530/94‑1 (MQ=60)
                                                                                  CATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCG            <  SRR4302542.2484517/94‑1 (MQ=60)
                                                                                  CATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCG            <  SRR4302542.1839031/94‑1 (MQ=60)
                                                                                  CATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCG            >  SRR4302542.1071620/1‑94 (MQ=60)
                                                                                  CATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCG            >  SRR4302542.6750802/1‑94 (MQ=60)
                                                                                   ATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGT           >  SRR4302542.6826747/1‑94 (MQ=60)
                                                                                   ATTTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGT           <  SRR4302542.1633041/94‑1 (MQ=60)
                                                                                     TTACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCG         <  SRR4302542.3536377/94‑1 (MQ=60)
                                                                                       ACGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCA       <  SRR4302542.7488890/94‑1 (MQ=60)
                                                                                        CGGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCAC      <  SRR4302542.4833870/94‑1 (MQ=60)
                                                                                         GGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACG     >  SRR4302542.2492674/1‑94 (MQ=60)
                                                                                         GGGCTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACG     <  SRR4302542.3651277/94‑1 (MQ=60)
                                                                                            CTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCA  >  SRR4302542.2898413/1‑94 (MQ=60)
                                                                                            CTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCA  >  SRR4302542.1698682/1‑94 (MQ=60)
                                                                                            |                                                                                             
TTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCA  >  NC_000913/2967249‑2967434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑