Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,968,005 |
T→A |
W108R (TGG→AGG) |
mutH → |
methyl‑directed mismatch repair |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,968,005 | 0 | T | A | 84.4%
| 969.9
/ 164.6
| 314 | W108R (TGG→AGG) | mutH | methyl‑directed mismatch repair |
| Reads supporting (aligned to +/- strand): ref base T (33/16); new base A (147/118); total (180/134) |
| Fisher's exact test for biased strand distribution p-value = 1.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.51e-01 |
Only 100 of 316 total aligned reads displayed.
AACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTT > NC_000913/2967913‑2968097
|
ttAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAggg > 2:4588205/1‑93 (MQ=255)
tAAAACTATCCCTGTGGATAGTCTCGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGa < 2:4784680/93‑1 (MQ=255)
aaaaCTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGaa > 1:1153597/1‑93 (MQ=255)
aaCTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAAc > 2:552376/1‑93 (MQ=255)
aaCTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAAc < 1:631687/93‑1 (MQ=255)
aCTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAAcc > 1:5207083/1‑93 (MQ=255)
cTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCa > 2:5320806/1‑93 (MQ=255)
tATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAg > 1:4300643/1‑93 (MQ=255)
tATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAg < 1:6195560/93‑1 (MQ=255)
tATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAg < 2:4862342/93‑1 (MQ=255)
tATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAACGGGGTGACCAGGGAAACCAg > 2:1220926/1‑93 (MQ=255)
aTCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGc > 2:1316138/1‑93 (MQ=255)
aTCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGc > 1:2024623/1‑93 (MQ=255)
tCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGcc > 2:6745120/1‑93 (MQ=255)
tCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGcc > 1:3260476/1‑93 (MQ=255)
cccTTTGGATAGTTTGGGTCGCCCGCTGGAAACAACATTGGTTTGTGTTGCCCCGTTCCGGGGTAACAGCGGGGCGGCCAGGGAACCCAGCCa < 1:827073/93‑1 (MQ=255)
cccTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCa < 2:4125866/93‑1 (MQ=255)
cTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACg > 2:6376819/1‑93 (MQ=255)
cTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACg < 1:1676427/93‑1 (MQ=255)
cTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACg > 1:417526/1‑93 (MQ=255)
tgtgGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGt > 1:157815/1‑93 (MQ=255)
tgtgGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGt < 2:1989553/93‑1 (MQ=255)
tgtgGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGt > 1:3516982/1‑93 (MQ=255)
gTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCcaca > 1:5983180/1‑93 (MQ=255)
gTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCcaca > 1:4700032/1‑93 (MQ=255)
gTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCcaca > 1:1385879/1‑93 (MQ=255)
gTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCcaca > 2:577079/1‑93 (MQ=255)
tCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACaa > 1:5490267/1‑93 (MQ=255)
ttGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAAc > 2:6481316/1‑93 (MQ=255)
ttGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAAc > 2:31447/1‑93 (MQ=255)
ggTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTc < 2:5679192/93‑1 (MQ=255)
cgtcCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCaaa < 1:3766572/93‑1 (MQ=255)
cgtcCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCaaa < 1:4007119/93‑1 (MQ=255)
cgtcCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCaaa < 2:7309368/93‑1 (MQ=255)
gtcCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAAc > 1:6854942/1‑93 (MQ=255)
gtcCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAAc > 2:2291563/1‑93 (MQ=255)
tcCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAAcg > 2:3403314/1‑93 (MQ=255)
ccGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAAcgc < 1:1820642/93‑1 (MQ=255)
cGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAAcgcg > 2:3355149/1‑93 (MQ=255)
cGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAAcgcg < 1:1011362/93‑1 (MQ=255)
gCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGt > 1:4790356/1‑93 (MQ=255)
gCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGt > 2:432299/1‑93 (MQ=255)
tGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTAc > 2:7155347/1‑93 (MQ=255)
ggAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACt > 1:4957161/1‑93 (MQ=255)
ggAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACt < 1:5734231/93‑1 (MQ=255)
ggAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACt > 1:968090/1‑93 (MQ=255)
ggAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACt < 1:5075434/93‑1 (MQ=255)
ggAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACt > 1:1506904/1‑93 (MQ=255)
gAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACtg > 1:6469298/1‑93 (MQ=255)
gAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACtg < 2:6567279/93‑1 (MQ=255)
gAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACtg > 2:5043560/1‑93 (MQ=255)
gAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACtg < 2:2462841/93‑1 (MQ=255)
aacaacATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACtgtg < 2:5248948/93‑1 (MQ=255)
aacaacATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACtgtg < 2:891700/93‑1 (MQ=255)
acaacaTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTgg > 1:333055/1‑93 (MQ=255)
caacaTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGa > 2:1711780/1‑93 (MQ=255)
gacaTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGAt > 1:2683071/2‑93 (MQ=255)
aacaTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGAt > 2:3071085/1‑93 (MQ=255)
acaTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGCACTGTGGATa > 2:3839454/1‑93 (MQ=255)
acaTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATa < 2:3982924/93‑1 (MQ=255)
caTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATAc > 2:390610/1‑93 (MQ=255)
aTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATAcc > 2:6866398/1‑93 (MQ=255)
aTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATAcc > 1:5837637/1‑93 (MQ=255)
ttCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCg > 2:7225690/1‑93 (MQ=255)
ttCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCg > 2:2631286/1‑93 (MQ=255)
tCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCgg > 1:5297073/1‑93 (MQ=255)
cGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGt > 1:4848275/1‑93 (MQ=255)
gTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGtt > 1:5645817/1‑93 (MQ=255)
ttGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGa > 1:3599184/1‑93 (MQ=255)
tgtgTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGaa < 2:7524073/93‑1 (MQ=255)
gtgtTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAg < 2:3530230/93‑1 (MQ=255)
gtgtTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAg > 2:3729601/1‑93 (MQ=255)
gtgtTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAg < 2:5558210/93‑1 (MQ=255)
tgtTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAgg > 2:6157345/1‑93 (MQ=255)
gtTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGc < 1:7413260/93‑1 (MQ=255)
tGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGa < 2:2307894/93‑1 (MQ=255)
gCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAg < 1:66781/93‑1 (MQ=255)
ccGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAgcgc < 2:1688678/93‑1 (MQ=255)
cGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCgca < 2:4446038/93‑1 (MQ=255)
gTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCgcag > 2:1040119/1‑93 (MQ=255)
ttAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCgcagc > 2:144327/1‑93 (MQ=255)
aaCGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCAt > 2:2171494/1‑93 (MQ=255)
cGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATcc < 1:6024034/93‑1 (MQ=255)
gggCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATccc > 2:302247/1‑93 (MQ=255)
ggCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCg < 1:367020/93‑1 (MQ=255)
gCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGc > 1:2345397/1‑93 (MQ=255)
gCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGc < 1:2935321/93‑1 (MQ=255)
cAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCt > 2:6064638/1‑93 (MQ=255)
aaTAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTg > 1:4523368/1‑93 (MQ=255)
aaTAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTg < 2:1175929/93‑1 (MQ=255)
aTAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTgg < 2:4964940/93‑1 (MQ=255)
aTAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTgg > 1:6728102/1‑93 (MQ=255)
aTAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTgg > 1:5345470/1‑93 (MQ=255)
tAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGgc < 1:7050566/93‑1 (MQ=255)
gCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGgcgc > 2:2553843/1‑93 (MQ=255)
gCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGgcgc > 1:2185231/1‑93 (MQ=255)
gACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTcg > 1:2084217/1‑93 (MQ=255)
aCCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTcgc < 1:7258047/93‑1 (MQ=255)
aCCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTcgc < 2:4187453/93‑1 (MQ=255)
aCCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTcgc < 1:3851068/93‑1 (MQ=255)
|
AACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTT > NC_000913/2967913‑2968097
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTG > NC_000913/2967912‑2968098
|
GAACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCA > SRR4302542.852940/1‑94 (MQ=60)
GAACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCA < SRR4302542.7548103/94‑1 (MQ=60)
AACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTG < SRR4302542.506886/94‑1 (MQ=60)
AACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAG < SRR4302542.2927417/94‑1 (MQ=60)
AACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAG < SRR4302542.6749922/94‑1 (MQ=60)
ACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGG < SRR4302542.983099/94‑1 (MQ=60)
CTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGG > SRR4302542.45693/1‑94 (MQ=60)
TAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAA > SRR4302542.3774408/1‑94 (MQ=60)
TAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAA > SRR4302542.4797487/1‑94 (MQ=60)
TAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAA > SRR4302542.1163485/1‑94 (MQ=60)
AAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAA > SRR4302542.2089749/1‑94 (MQ=60)
AACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACC < SRR4302542.637131/94‑1 (MQ=60)
AACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACC > SRR4302542.5257726/1‑94 (MQ=60)
ACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCA < SRR4302542.3105205/94‑1 (MQ=60)
ACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCA < SRR4302542.5214733/94‑1 (MQ=60)
CTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAG > SRR4302542.2927679/1‑94 (MQ=60)
CTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAG > SRR4302542.4342932/1‑94 (MQ=60)
CTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAG > SRR4302542.4078339/1‑94 (MQ=60)
TATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGC < SRR4302542.6054189/94‑1 (MQ=60)
TATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGC < SRR4302542.6255950/94‑1 (MQ=60)
TATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGC > SRR4302542.2042133/1‑94 (MQ=60)
ATCCCTGTGGTTAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTTTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCC > SRR4302542.700465/1‑94 (MQ=60)
ATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCC > SRR4302542.3291266/1‑94 (MQ=60)
TCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCA < SRR4302542.6730134/94‑1 (MQ=60)
CCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCAC > SRR4302542.3322866/1‑94 (MQ=60)
CCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCAC > SRR4302542.5949327/1‑94 (MQ=60)
CCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCAC > SRR4302542.4598039/1‑94 (MQ=60)
CCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCAC < SRR4302542.2778777/94‑1 (MQ=60)
CCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACG > SRR4302542.421119/1‑94 (MQ=60)
CTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGT > SRR4302542.159159/1‑94 (MQ=60)
CTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGT < SRR4302542.1690916/94‑1 (MQ=60)
CTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGT > SRR4302542.3549861/1‑94 (MQ=60)
TGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTG > SRR4302542.3571309/1‑94 (MQ=60)
GTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGC < SRR4302542.6852962/94‑1 (MQ=60)
GTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGC < SRR4302542.234741/94‑1 (MQ=60)
GTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGC < SRR4302542.715146/94‑1 (MQ=60)
TGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCG < SRR4302542.6774925/94‑1 (MQ=60)
TGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCG < SRR4302542.4090077/94‑1 (MQ=60)
TGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCG > SRR4302542.1992202/1‑94 (MQ=60)
GGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGC > SRR4302542.3915684/1‑94 (MQ=60)
GGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAAGCAGCCACGTGCGC > SRR4302542.1022285/1‑94 (MQ=60)
ATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCA < SRR4302542.2350561/94‑1 (MQ=60)
ATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCA > SRR4302542.756610/1‑94 (MQ=60)
AGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACA > SRR4302542.4861374/1‑94 (MQ=60)
AGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACA > SRR4302542.1397849/1‑94 (MQ=60)
AGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACA > SRR4302542.6041135/1‑94 (MQ=60)
AGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACA > SRR4302542.4745910/1‑94 (MQ=60)
GTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAA > SRR4302542.3296710/1‑94 (MQ=60)
GTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAA > SRR4302542.5543603/1‑94 (MQ=60)
TCTTGGTCGTCCGCTGGAAACAACGTTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAA < SRR4302542.4936541/94‑1 (MQ=60)
TCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAA > SRR4302542.4799807/1‑94 (MQ=60)
CTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAAC < SRR4302542.4957804/94‑1 (MQ=60)
CTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAAC > SRR4302542.3433212/1‑94 (MQ=60)
CTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAAC > SRR4302542.4866237/1‑94 (MQ=60)
CTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAAC < SRR4302542.5732934/94‑1 (MQ=60)
TGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTC > SRR4302542.5411329/1‑94 (MQ=60)
GGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCA > SRR4302542.3023211/1‑94 (MQ=60)
CGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAAC > SRR4302542.6922314/1‑94 (MQ=60)
CGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAAC < SRR4302542.2034164/94‑1 (MQ=60)
CGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAAC < SRR4302542.3803829/94‑1 (MQ=60)
CGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAAC < SRR4302542.4046632/94‑1 (MQ=60)
TCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGC < SRR4302542.4765296/94‑1 (MQ=60)
CCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCG < SRR4302542.154087/94‑1 (MQ=60)
CCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCG < SRR4302542.1836408/94‑1 (MQ=60)
CGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGT > SRR4302542.4837035/1‑94 (MQ=60)
CGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGT < SRR4302542.1020073/94‑1 (MQ=60)
TGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACT > SRR4302542.5005318/1‑94 (MQ=60)
TGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACT > SRR4302542.976406/1‑94 (MQ=60)
TGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACT > SRR4302542.1519935/1‑94 (MQ=60)
GGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTG > SRR4302542.1688406/1‑94 (MQ=60)
GGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTG < SRR4302542.5124755/94‑1 (MQ=60)
GGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTG < SRR4302542.5789874/94‑1 (MQ=60)
GGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTG > SRR4302542.6533039/1‑94 (MQ=60)
GGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTG > SRR4302542.3687698/1‑94 (MQ=60)
GGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTG < SRR4302542.923348/94‑1 (MQ=60)
GGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTG > SRR4302542.1535205/1‑94 (MQ=60)
AAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTG > SRR4302542.5395790/1‑94 (MQ=60)
AAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTG < SRR4302542.1358676/94‑1 (MQ=60)
AAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTG > SRR4302542.204900/1‑94 (MQ=60)
AACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGG > SRR4302542.335945/1‑94 (MQ=60)
ACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGA > SRR4302542.4217947/1‑94 (MQ=60)
CGACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGAT > SRR4302542.2708952/1‑94 (MQ=60)
CAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGAT > SRR4302542.1470209/1‑94 (MQ=60)
CAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGAT < SRR4302542.2152660/94‑1 (MQ=60)
AACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATA > SRR4302542.3952701/1‑94 (MQ=60)
AACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATA < SRR4302542.2411717/94‑1 (MQ=60)
CATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACC > SRR4302542.5894268/1‑94 (MQ=60)
CATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACC > SRR4302542.5820273/1‑94 (MQ=60)
CATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACC < SRR4302542.4546477/94‑1 (MQ=60)
ATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCG < SRR4302542.3550817/94‑1 (MQ=60)
TTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGG > SRR4302542.5348548/1‑94 (MQ=60)
TTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGG > SRR4302542.5720607/1‑94 (MQ=60)
TCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGT > SRR4302542.4895485/1‑94 (MQ=60)
CGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTT > SRR4302542.5155626/1‑94 (MQ=60)
CGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTT > SRR4302542.5700646/1‑94 (MQ=60)
GTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTG > SRR4302542.7023918/1‑94 (MQ=60)
TTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGA > SRR4302542.6420372/1‑94 (MQ=60)
TTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGA > SRR4302542.3632735/1‑94 (MQ=60)
TTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAA < SRR4302542.1961557/94‑1 (MQ=60)
TGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAG < SRR4302542.6115307/94‑1 (MQ=60)
TGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAG > SRR4302542.5624101/1‑94 (MQ=60)
GTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGG < SRR4302542.3666172/94‑1 (MQ=60)
GTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGG < SRR4302542.1800058/94‑1 (MQ=60)
TGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGC < SRR4302542.3826673/94‑1 (MQ=60)
GTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCG < SRR4302542.59412/94‑1 (MQ=60)
GTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCG < SRR4302542.827743/94‑1 (MQ=60)
GTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCG < SRR4302542.1345549/94‑1 (MQ=60)
GTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCG < SRR4302542.7485808/94‑1 (MQ=60)
GTTGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCG > SRR4302542.731807/1‑94 (MQ=60)
TGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAG > SRR4302542.587152/1‑94 (MQ=60)
TGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAG < SRR4302542.7429475/94‑1 (MQ=60)
TGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAG < SRR4302542.5540923/94‑1 (MQ=60)
TGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAG < SRR4302542.1748216/94‑1 (MQ=60)
TGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAG > SRR4302542.6845402/1‑94 (MQ=60)
TGCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAG > SRR4302542.2189210/1‑94 (MQ=60)
GCCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGC < SRR4302542.67317/94‑1 (MQ=60)
CCCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCG > SRR4302542.661642/1‑94 (MQ=60)
CCCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGC > SRR4302542.6316733/1‑94 (MQ=60)
CCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCA < SRR4302542.536106/94‑1 (MQ=60)
CCGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCA > SRR4302542.4339070/1‑94 (MQ=60)
CGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAG > SRR4302542.558076/1‑94 (MQ=60)
CGTTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAG > SRR4302542.6488561/1‑94 (MQ=60)
TTAACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCA > SRR4302542.2987816/1‑94 (MQ=60)
AACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATC < SRR4302542.5524231/94‑1 (MQ=60)
AACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATC > SRR4302542.7008468/1‑94 (MQ=60)
ACGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCC < SRR4302542.3766322/94‑1 (MQ=60)
CGGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCC < SRR4302542.6082368/94‑1 (MQ=60)
GGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCG > SRR4302542.6056687/1‑94 (MQ=60)
GGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCG > SRR4302542.7386674/1‑94 (MQ=60)
GGGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCG < SRR4302542.3536256/94‑1 (MQ=60)
GGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGC < SRR4302542.5013565/94‑1 (MQ=60)
GGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGC > SRR4302542.2365488/1‑94 (MQ=60)
GGCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGC < SRR4302542.370210/94‑1 (MQ=60)
GCAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCT < SRR4302542.2963436/94‑1 (MQ=60)
CAATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTG > SRR4302542.4567675/1‑94 (MQ=60)
AATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGG > SRR4302542.5397395/1‑94 (MQ=60)
AATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGG > SRR4302542.632538/1‑94 (MQ=60)
AATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGG > SRR4302542.6794338/1‑94 (MQ=60)
ATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGC < SRR4302542.5279446/94‑1 (MQ=60)
ATAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGC > SRR4302542.6160012/1‑94 (MQ=60)
TAGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCG < SRR4302542.7119784/94‑1 (MQ=60)
AGCGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGC > SRR4302542.2204053/1‑94 (MQ=60)
CGGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAG > SRR4302542.1052755/1‑94 (MQ=60)
GGGGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGC > SRR4302542.678445/1‑94 (MQ=60)
GGTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGT < SRR4302542.4447177/94‑1 (MQ=60)
GTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTC < SRR4302542.3869344/94‑1 (MQ=60)
GTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTC < SRR4302542.943974/94‑1 (MQ=60)
GTGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTC < SRR4302542.1623842/94‑1 (MQ=60)
TGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCG > SRR4302542.620563/1‑94 (MQ=60)
TGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCG > SRR4302542.2102214/1‑94 (MQ=60)
TGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCG < SRR4302542.1421567/94‑1 (MQ=60)
TGACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCG < SRR4302542.2580594/94‑1 (MQ=60)
ACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCG < SRR4302542.387420/94‑1 (MQ=60)
ACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCG > SRR4302542.5264781/1‑94 (MQ=60)
ACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCG < SRR4302542.7329204/94‑1 (MQ=60)
ACCAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCG < SRR4302542.3889113/94‑1 (MQ=60)
CAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTT > SRR4302542.2505876/1‑94 (MQ=60)
CAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTT > SRR4302542.4010697/1‑94 (MQ=60)
CAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTT > SRR4302542.3144437/1‑94 (MQ=60)
CAGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTT > SRR4302542.4139088/1‑94 (MQ=60)
AGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTG > SRR4302542.2837359/1‑94 (MQ=60)
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GAACTTAAAACTATCCCTGTGGATAGTCTTGGTCGTCCGCTGGAAACAACATTCGTTTGTGTTGCCCCGTTAACGGGCAATAGCGGGGTGACCTGGGAAACCAGCCACGTGCGCCACAAACTCAAACGCGTACTGTGGATACCGGTTGAAGGCGAGCGCAGCATCCCGCTGGCGCAGCGTCGCGTTG > NC_000913/2967912‑2968098
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
