Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,025,676	+C	coding (535/570 nt)	ygfQ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,025,675	1	.	C	99.6%	840.1 / ‑4.4	245	coding (534/570 nt)	ygfQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (118/126); total (118/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 261 total aligned reads displayed.

CTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑CAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCG  >  NC_000913/3025584‑3025762

cTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑c                                                                                        <  2:1107404/93‑1 (MQ=255)

cTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑c                                                                                        <  1:2332751/93‑1 (MQ=255)

 tCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑cc                                                                                       >  2:4698275/1‑92 (MQ=255)

 tCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑cc                                                                                       >  1:2525715/1‑92 (MQ=255)

  cACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑cca                                                                                      <  2:804648/93‑3 (MQ=255)

  cACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑cca                                                                                      <  2:728402/93‑3 (MQ=255)

  cACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑cca                                                                                      <  1:2611429/93‑3 (MQ=255)

   aCGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑ccag                                                                                     <  1:5724757/93‑4 (MQ=255)

   aCGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑ccag                                                                                     <  2:2962566/93‑4 (MQ=255)

   aCGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑ccag                                                                                     <  1:2948182/93‑4 (MQ=255)

      gTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTgg                                                                                   >  2:1015418/1‑93 (MQ=255)

      gTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTgg                                                                                   <  1:7196601/93‑1 (MQ=255)

        aCAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGgcg                                                                                 >  1:833958/1‑93 (MQ=255)

           ggtatcggtatcGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTc                                                                              <  1:1041651/93‑1 (MQ=255)

           ggtatcggtatcGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTc                                                                              >  1:999171/1‑93 (MQ=255)

            gtatcggtatcgGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCg                                                                             <  2:6763249/93‑1 (MQ=255)

             tatcggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCgg                                                                            <  1:6718510/93‑1 (MQ=255)

             tatcggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCgg                                                                            <  1:3711527/93‑1 (MQ=255)

              atcggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGt                                                                           <  2:708287/93‑1 (MQ=255)

              atcggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGt                                                                           <  1:4345470/93‑1 (MQ=255)

               tcggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTg                                                                          <  2:5646463/93‑1 (MQ=255)

               tcggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTg                                                                          >  1:5080451/1‑93 (MQ=255)

               tcggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTg                                                                          >  1:3870250/1‑93 (MQ=255)

                 ggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCg                                                                        >  2:3557969/1‑93 (MQ=255)

                 ggtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCg                                                                        <  1:6478331/93‑1 (MQ=255)

                  gtatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGt                                                                       >  1:4225770/1‑93 (MQ=255)

                   tatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGtt                                                                      >  2:400112/1‑93 (MQ=255)

                   tatcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGtt                                                                      <  2:4279306/93‑1 (MQ=255)

                    atcggGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGttt                                                                     >  1:739654/1‑93 (MQ=255)

                       gggCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTAcc                                                                  >  2:2812835/1‑93 (MQ=255)

                       gggCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTAcc                                                                  >  2:5387448/1‑93 (MQ=255)

                        ggCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTAcct                                                                 >  1:7028631/1‑93 (MQ=255)

                         gCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTAcctc                                                                <  2:3204415/93‑1 (MQ=255)

                          cTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCCGTGCGTTTAcctcc                                                               <  2:6435564/93‑1 (MQ=255)

                           tGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTAcctcct                                                              <  1:582572/93‑1 (MQ=255)

                           tGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTAcctcct                                                              >  2:651221/1‑93 (MQ=255)

                           tGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTAcctcct                                                              <  2:5557504/93‑1 (MQ=255)

                           tGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTAcctcct                                                              >  1:2131001/1‑93 (MQ=255)

                             tttCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTc                                                            >  1:5610929/1‑93 (MQ=255)

                             tttCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTc                                                            >  1:477101/1‑93 (MQ=255)

                              ttCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTcc                                                           <  2:2455766/93‑1 (MQ=255)

                               tCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTccc                                                          <  2:4529774/93‑1 (MQ=255)

                                 tgctgctgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCgg                                                        >  1:5349990/1‑93 (MQ=255)

                                  gctgctgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGt                                                       >  2:4143694/1‑93 (MQ=255)

                                    tgctgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtga                                                     >  1:1553504/1‑93 (MQ=255)

                                    tgctgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtga                                                     >  2:5330058/1‑93 (MQ=255)

                                     gctgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgat                                                    <  1:7264370/93‑1 (MQ=255)

                                     gctgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgat                                                    >  1:7354734/1‑93 (MQ=255)

                                     gctgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgat                                                    <  2:6177231/93‑1 (MQ=255)

                                     gctgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgat                                                    <  2:4593439/93‑1 (MQ=255)

                                       tgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgatga                                                  >  2:699752/1‑93 (MQ=255)

                                       tgATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgatga                                                  <  2:6872139/93‑1 (MQ=255)

                                        gATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgatgat                                                 <  1:6579664/93‑1 (MQ=255)

                                        gATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgatgat                                                 <  1:2256118/93‑1 (MQ=255)

                                         aTTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgatgatg                                                >  1:6856196/1‑93 (MQ=255)

                                          ttGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGtgatgatga                                               >  1:1489554/1‑93 (MQ=255)

                                             ctgctAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCt                                            <  2:5132066/93‑1 (MQ=255)

                                             ctgctAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCt                                            >  2:1790868/1‑93 (MQ=255)

                                             ctgctAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCt                                            <  2:1849701/93‑1 (MQ=255)

                                             ctgctAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCt                                            <  1:1956324/93‑1 (MQ=255)

                                              tgctAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCtt                                           <  2:4794244/93‑1 (MQ=255)

                                               gctAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTg                                          >  2:1664202/1‑93 (MQ=255)

                                                ctAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGc                                         <  1:3271768/93‑1 (MQ=255)

                                                ctAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGc                                         >  1:3116153/1‑93 (MQ=255)

                                                 tAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCt                                        <  1:1208249/93‑1 (MQ=255)

                                                     ggTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTgggg                                    <  2:5405286/93‑1 (MQ=255)

                                                      gtgtGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGc                                   <  1:1070019/93‑1 (MQ=255)

                                                       tgtgGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCt                                  >  2:2604208/1‑93 (MQ=255)

                                                        gtgGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTg                                 <  1:4013262/93‑1 (MQ=255)

                                                        gtgGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTg                                 >  2:137171/1‑93 (MQ=255)

                                                           ggTATGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCg                              >  1:2838622/1‑93 (MQ=255)

                                                              aTGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTc                           >  2:3758627/1‑93 (MQ=255)

                                                              aTGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTc                           >  2:1314263/1‑93 (MQ=255)

                                                               tGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCa                          >  2:4670841/1‑93 (MQ=255)

                                                               tGGTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCa                          <  2:6005969/93‑1 (MQ=255)

                                                                ggTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCAt                         <  1:152952/93‑1 (MQ=255)

                                                                 gTTATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATc                        <  1:2226053/93‑1 (MQ=255)

                                                                  ttATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCt                       <  2:1417129/93‑1 (MQ=255)

                                                                   tATCAAAATCCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCtt                      <  2:3532719/93‑1 (MQ=255)

                                                                   tATCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCtt                      <  1:3490813/93‑1 (MQ=255)

                                                                     tCAAAAACCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCg                    <  2:6323572/93‑1 (MQ=255)

                                                                       aaaaaCCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGc                  <  1:6493594/93‑1 (MQ=255)

                                                                         aaaCCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCt                >  2:3452021/1‑93 (MQ=255)

                                                                         aaaCCCGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCt                >  2:2794069/1‑93 (MQ=255)

                                                                             ccGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGgag            >  2:5906085/1‑93 (MQ=255)

                                                                              cGATTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGgaga           >  2:2028961/1‑93 (MQ=255)

                                                                                aTTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAg         <  1:3562218/93‑1 (MQ=255)

                                                                                aTTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAg         >  2:3065861/1‑93 (MQ=255)

                                                                                aTTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAg         <  2:1340054/93‑1 (MQ=255)

                                                                                aTTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAg         >  1:6075812/1‑93 (MQ=255)

                                                                                aTTGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAg         >  1:6191910/1‑93 (MQ=255)

                                                                                 ttGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAgt        >  2:3311723/1‑93 (MQ=255)

                                                                                 ttGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAgt        <  1:132297/93‑1 (MQ=255)

                                                                                  tGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAgtg       >  2:4958434/1‑93 (MQ=255)

                                                                                  tGAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAgtg       >  2:2390838/1‑93 (MQ=255)

                                                                                   gAAGGCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAgtgt      >  1:4675371/1‑93 (MQ=255)

                                                                                      ggCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTcnn   >  2:2276629/1‑91 (MQ=255)

                                                                                      ggCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTcgc   <  1:2485092/93‑1 (MQ=255)

                                                                                       gCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTcgcg  >  2:6598167/1‑93 (MQ=255)

                                                                                       gCTTGCCAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTcgcg  >  2:7132163/1‑93 (MQ=255)

CTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑CAGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCG  >  NC_000913/3025584‑3025762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑C‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCGTACCC  >  NC_000913/3025584‑3025767

CTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑C‑C                                                                                            <  SRR4302542.2352734/94‑1 (MQ=60)

CTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑C‑C                                                                                            <  SRR4302542.1062395/94‑1 (MQ=60)

CTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑C‑C                                                                                            >  SRR4302542.2550208/1‑94 (MQ=60)

 TCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑Cca                                                                                            <  SRR4302542.5410688/94‑3 (MQ=60)

  CACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑Ccag                                                                                           <  SRR4302542.2636671/94‑4 (MQ=60)

  CACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑Ccag                                                                                           <  SRR4302542.7381357/94‑4 (MQ=60)

   ACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGT                                                                                          <  SRR4302542.2976408/94‑1 (MQ=60)

   ACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGT                                                                                          <  SRR4302542.5780324/94‑1 (MQ=60)

     GGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGG                                                                                        <  SRR4302542.7401827/94‑1 (MQ=60)

      GTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGC                                                                                       <  SRR4302542.2260833/94‑1 (MQ=60)

      GTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGC                                                                                       <  SRR4302542.7267227/94‑1 (MQ=60)

       TACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCG                                                                                      >  SRR4302542.841166/1‑94 (MQ=60)

       TACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCG                                                                                      <  SRR4302542.7440793/94‑1 (MQ=60)

         CAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCT                                                                                    >  SRR4302542.4361996/1‑94 (MQ=60)

          AGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTC                                                                                   >  SRR4302542.1007770/1‑94 (MQ=60)

           GGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCG                                                                                  <  SRR4302542.1050592/94‑1 (MQ=60)

            GTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGG                                                                                 <  SRR4302542.6414359/94‑1 (MQ=60)

             TATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGT                                                                                <  SRR4302542.1519378/94‑1 (MQ=60)

             TATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGT                                                                                <  SRR4302542.3748242/94‑1 (MQ=60)

             TATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGT                                                                                <  SRR4302542.2397192/94‑1 (MQ=60)

             TATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGT                                                                                <  SRR4302542.6784676/94‑1 (MQ=60)

              ATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTG                                                                               >  SRR4302542.5129825/1‑94 (MQ=60)

              ATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTG                                                                               <  SRR4302542.4388162/94‑1 (MQ=60)

              ATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTG                                                                               >  SRR4302542.3908486/1‑94 (MQ=60)

              ATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTA                                                                               <  SRR4302542.1514904/94‑1 (MQ=60)

                CGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCG                                                                             <  SRR4302542.5602408/94‑1 (MQ=60)

                 GGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGT                                                                            >  SRR4302542.474278/1‑94 (MQ=60)

                 GGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGT                                                                            <  SRR4302542.6542154/94‑1 (MQ=60)

                 GGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGT                                                                            >  SRR4302542.4267400/1‑94 (MQ=60)

                   TATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTT                                                                          >  SRR4302542.746074/1‑94 (MQ=60)

                   TATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTT                                                                          <  SRR4302542.3829954/94‑1 (MQ=60)

                       GGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCT                                                                      >  SRR4302542.5141027/1‑94 (MQ=60)

                       GGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCT                                                                      >  SRR4302542.7097698/1‑94 (MQ=60)

                         GCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCC                                                                    <  SRR4302542.6894432/94‑1 (MQ=60)

                         GCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCC                                                                    >  SRR4302542.1106273/1‑94 (MQ=60)

                         GCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCC                                                                    >  SRR4302542.4288931/1‑94 (MQ=60)

                          CTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCT                                                                   >  SRR4302542.2149388/1‑94 (MQ=60)

                           TGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTT                                                                  >  SRR4302542.754890/1‑94 (MQ=60)

                           TGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTT                                                                  <  SRR4302542.587602/94‑1 (MQ=60)

                            GTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTC                                                                 >  SRR4302542.481237/1‑94 (MQ=60)

                            GTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTC                                                                 >  SRR4302542.5665442/1‑94 (MQ=60)

                            GTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTC                                                                 <  SRR4302542.2212660/94‑1 (MQ=60)

                             TTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCC                                                                >  SRR4302542.813893/1‑94 (MQ=60)

                                CTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGG                                                             >  SRR4302542.7317207/1‑94 (MQ=60)

                                CTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGG                                                             >  SRR4302542.260880/1‑94 (MQ=60)

                                CTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGG                                                             >  SRR4302542.5401954/1‑94 (MQ=60)

                                CTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGG                                                             >  SRR4302542.3558061/1‑94 (MQ=60)

                                 TGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGT                                                            <  SRR4302542.2512221/94‑1 (MQ=60)

                                   CTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGA                                                          <  SRR4302542.2469938/94‑1 (MQ=60)

                                   CTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGA                                                          >  SRR4302542.1566912/1‑94 (MQ=60)

                                    TGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGAT                                                         >  SRR4302542.7426752/1‑94 (MQ=60)

                                    TGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGAT                                                         >  SRR4302542.7340496/1‑94 (MQ=60)

                                     GCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATG                                                        <  SRR4302542.65868/94‑1 (MQ=60)

                                     GCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATG                                                        <  SRR4302542.7335582/94‑1 (MQ=60)

                                      CTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGA                                                       >  SRR4302542.315967/1‑94 (MQ=60)

                                      CTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGA                                                       >  SRR4302542.453659/1‑94 (MQ=60)

                                        GATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATG                                                     >  SRR4302542.6923576/1‑94 (MQ=60)

                                        GATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATG                                                     <  SRR4302542.6644497/94‑1 (MQ=60)

                                        GATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATG                                                     <  SRR4302542.6694855/94‑1 (MQ=60)

                                        GATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATG                                                     >  SRR4302542.1793098/1‑94 (MQ=60)

                                        GATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATG                                                     <  SRR4302542.2275516/94‑1 (MQ=60)

                                         ATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGA                                                    >  SRR4302542.1502436/1‑94 (MQ=60)

                                          TTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAG                                                   <  SRR4302542.6720422/94‑1 (MQ=60)

                                          TTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAG                                                   <  SRR4302542.344642/94‑1 (MQ=60)

                                           TGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGC                                                  >  SRR4302542.584231/1‑94 (MQ=60)

                                            GCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCT                                                 >  SRR4302542.404236/1‑94 (MQ=60)

                                             CTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTT                                                <  SRR4302542.1973240/94‑1 (MQ=60)

                                             CTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTT                                                <  SRR4302542.6252231/94‑1 (MQ=60)

                                               GCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGC                                              >  SRR4302542.4267236/1‑94 (MQ=60)

                                               GCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGC                                              >  SRR4302542.3145767/1‑94 (MQ=60)

                                                CTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCT                                             >  SRR4302542.1177315/1‑94 (MQ=60)

                                                CTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCT                                             <  SRR4302542.1429644/94‑1 (MQ=60)

                                                CTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCT                                             <  SRR4302542.3302643/94‑1 (MQ=60)

                                                 TAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTG                                            <  SRR4302542.1218633/94‑1 (MQ=60)

                                                 TAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTG                                            <  SRR4302542.291044/94‑1 (MQ=60)

                                                  AACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGG                                           >  SRR4302542.485991/1‑94 (MQ=60)

                                                   ACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGG                                          >  SRR4302542.962988/1‑94 (MQ=60)

                                                      GTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑GGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCT                                       <  SRR4302542.6554797/94‑1 (MQ=60)

                                                      GTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCT                                       <  SRR4302542.968313/94‑1 (MQ=60)

                                                      GTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCT                                       <  SRR4302542.1079214/94‑1 (MQ=60)

                                                        GTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGG                                     <  SRR4302542.4052874/94‑1 (MQ=60)

                                                         TGGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGC                                    <  SRR4302542.3516599/94‑1 (MQ=60)

                                                          GGGTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCG                                   >  SRR4302542.2865904/1‑94 (MQ=60)

                                                            GTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGT                                 >  SRR4302542.4831402/1‑94 (MQ=60)

                                                            GTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGT                                 >  SRR4302542.2252966/1‑94 (MQ=60)

                                                            GTATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGT                                 >  SRR4302542.6632465/1‑94 (MQ=60)

                                                             TATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTC                                >  SRR4302542.7242981/1‑94 (MQ=60)

                                                              ATGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCA                               >  SRR4302542.1350721/1‑94 (MQ=60)

                                                               TGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCAT                              >  SRR4302542.1270982/1‑94 (MQ=60)

                                                               TGGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCAT                              >  SRR4302542.2558017/1‑94 (MQ=60)

                                                                GGTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATC                             <  SRR4302542.154247/94‑1 (MQ=60)

                                                                 GTTATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCT                            <  SRR4302542.2245205/94‑1 (MQ=60)

                                                                  TTATCAAAAACCCGATTGAAGGCTTG‑CGAGTGGCGCTCGGTGCGTTTCCCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTT                           <  SRR4302542.6240862/94‑1 (MQ=60)

                                                                   TATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTC                          <  SRR4302542.2212629/94‑1 (MQ=60)

                                                                   TATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTC                          <  SRR4302542.3523456/94‑1 (MQ=60)

                                                                    ATCAAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCG                         <  SRR4302542.3141694/94‑1 (MQ=60)

                                                                       AAAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCC                      <  SRR4302542.6557584/94‑1 (MQ=60)

                                                                        AAAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCT                     <  SRR4302542.3686084/94‑1 (MQ=60)

                                                                         AAACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTG                    <  SRR4302542.3933189/94‑1 (MQ=60)

                                                                           ACCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGA                  >  SRR4302542.2107554/1‑94 (MQ=60)

                                                                            CCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAG                 <  SRR4302542.2641401/94‑1 (MQ=60)

                                                                            CCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAG                 <  SRR4302542.2984946/94‑1 (MQ=60)

                                                                            CCCGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAG                 <  SRR4302542.3843107/94‑1 (MQ=60)

                                                                              CGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAA               >  SRR4302542.1543592/1‑94 (MQ=60)

                                                                              CGATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAA               <  SRR4302542.2276208/94‑1 (MQ=60)

                                                                               GATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAG              >  SRR4302542.6252156/1‑94 (MQ=60)

                                                                               GATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAG              >  SRR4302542.6134656/1‑94 (MQ=60)

                                                                                ATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGT             >  SRR4302542.5875813/1‑94 (MQ=60)

                                                                                ATTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGT             <  SRR4302542.3595476/94‑1 (MQ=60)

                                                                                 TTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTG            >  SRR4302542.3533492/1‑94 (MQ=60)

                                                                                 TTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTG            <  SRR4302542.133377/94‑1 (MQ=60)

                                                                                 TTGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTG            <  SRR4302542.5999022/94‑1 (MQ=60)

                                                                                  TGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGTCTGGCGGTCATCTTCGGCCTGGAGAAGTGT           <  SRR4302542.722437/94‑1 (MQ=60)

                                                                                  TGAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGT           >  SRR4302542.4721055/1‑94 (MQ=60)

                                                                                   GAAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTC          <  SRR4302542.2659816/94‑1 (MQ=60)

                                                                                    AAGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCG         <  SRR4302542.1764111/94‑1 (MQ=60)

                                                                                     AGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGC        <  SRR4302542.5768929/94‑1 (MQ=60)

                                                                                     AGGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGC        >  SRR4302542.480979/1‑94 (MQ=60)

                                                                                      GGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCG       <  SRR4302542.2509177/94‑1 (MQ=60)

                                                                                      GGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCG       >  SRR4302542.599366/1‑94 (MQ=60)

                                                                                      GGCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCG       <  SRR4302542.6957625/94‑1 (MQ=60)

                                                                                       GCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTtggagaagggtgcgt      >  SRR4302542.2364816/1‑79 (MQ=60)

                                                                                       GCTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCGT      <  SRR4302542.6954301/94‑1 (MQ=60)

                                                                                        CTTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCGTA     >  SRR4302542.7116684/1‑94 (MQ=60)

                                                                                         TTGCC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCGTAC    <  SRR4302542.385551/94‑1 (MQ=60)

                                                                                           gcC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCGTACCC  <  SRR4302542.3655995/92‑1 (MQ=60)

                                                                                           gcC‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCGTACCC  <  SRR4302542.5608614/92‑1 (MQ=60)

CTCACGGTACAGGTATCGGTATCGGGCTGTTTCTGCTGCTGATTGCTGCTAACGGTGTGGGTATGGTTATCAAAAACCCGATTGAAGGCTTG‑C‑AGTGGCGCTCGGTGCGTTTACCTCCTTCCCGGTGATGATGAGCTTGCTGGGGCTGGCGGTCATCTTCGGCCTGGAGAAGTGTCGCGTACCC  >  NC_000913/3025584‑3025767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`