Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,116,492 |
C→T |
E213K (GAA→AAA) |
b2974 ← |
putative endoglucanase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,116,492 | 0 | C | T | 83.8%
| 776.4
/ 94.4
| 284 | E213K (GAA→AAA) | b2974 | putative endoglucanase |
| Reads supporting (aligned to +/- strand): ref base C (18/28); new base T (114/124); total (132/152) |
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 285 total aligned reads displayed.
GACGGGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCG > NC_000913/3116400‑3116581
|
cGGGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCg > 2:6054886/1‑93 (MQ=255)
gggCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCgg < 2:4500330/93‑1 (MQ=255)
gggCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCgg > 2:3473910/1‑93 (MQ=255)
ggCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGt > 1:3597118/1‑93 (MQ=255)
gCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTg > 2:7373415/1‑93 (MQ=255)
aCCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGa < 2:4792402/93‑1 (MQ=255)
aCCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGa < 1:3133996/93‑1 (MQ=255)
ggTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCg > 2:1128021/1‑93 (MQ=255)
gTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGa < 1:6893391/93‑1 (MQ=255)
gAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGAtt > 1:2762315/1‑93 (MQ=255)
gAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGAtt < 2:2175733/93‑1 (MQ=255)
gAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGAtt < 2:5190272/93‑1 (MQ=255)
aaGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGAttt < 2:512862/93‑1 (MQ=255)
aGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTg > 2:7259928/1‑93 (MQ=255)
gTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGc < 1:1029016/93‑1 (MQ=255)
tATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCt > 1:295762/1‑93 (MQ=255)
aTGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCtt < 1:975202/93‑1 (MQ=255)
tGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTta > 1:2347095/1‑93 (MQ=255)
aGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTtata < 1:1833864/93‑1 (MQ=255)
gTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATAc > 1:4506297/1‑93 (MQ=255)
tGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACa < 2:3581857/93‑1 (MQ=255)
tGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACa < 1:696610/93‑1 (MQ=255)
ggATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAg > 2:1928006/1‑93 (MQ=255)
nntGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGc < 2:1390372/91‑1 (MQ=255)
gATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGc < 1:2994398/93‑1 (MQ=255)
aTGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCg > 1:7322862/1‑93 (MQ=255)
tGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGa < 2:2490461/93‑1 (MQ=255)
gcgcTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGt < 1:364362/93‑1 (MQ=255)
cgcTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTc < 2:780729/93‑1 (MQ=255)
cgcTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTc < 1:1752641/93‑1 (MQ=255)
gcTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCg > 1:240771/1‑93 (MQ=255)
gcTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCg > 2:5239323/1‑93 (MQ=255)
cTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGa > 1:4195066/1‑93 (MQ=255)
cTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGa > 2:1473277/1‑93 (MQ=255)
tttATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGaa > 2:2584237/1‑93 (MQ=255)
tttATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGaa > 1:838454/1‑93 (MQ=255)
tttATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGaa > 2:3912158/1‑93 (MQ=255)
tttATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGaa < 2:1543561/93‑1 (MQ=255)
ttATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAg < 2:5798331/93‑1 (MQ=255)
tATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGc < 1:647698/93‑1 (MQ=255)
tATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGc > 2:5604548/1‑93 (MQ=255)
cGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGtt > 2:5456379/1‑93 (MQ=255)
cGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGtt < 1:1554782/93‑1 (MQ=255)
gTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTa < 2:1696325/93‑1 (MQ=255)
gTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTa > 1:6368691/1‑93 (MQ=255)
tCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTAc < 2:3878858/93‑1 (MQ=255)
gcagcaTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTActc < 1:6552675/93‑1 (MQ=255)
gcagcaTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTActc > 1:5891187/1‑93 (MQ=255)
gcagcaTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTActc > 1:3455353/1‑93 (MQ=255)
gcagcaTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTActc > 2:2682738/1‑93 (MQ=255)
agcaTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACtctc < 1:3051294/93‑1 (MQ=255)
agcaTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACtctc < 2:4405856/93‑1 (MQ=255)
agcaTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACtctc > 1:5674020/1‑93 (MQ=255)
agcaTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACtctc > 1:1461268/1‑93 (MQ=255)
caTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGa < 2:3211828/93‑1 (MQ=255)
caTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGa > 2:5660224/1‑93 (MQ=255)
caTTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGa > 2:4894910/1‑93 (MQ=255)
ttGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATc > 1:5345678/1‑93 (MQ=255)
tGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCa < 2:1617905/93‑1 (MQ=255)
gTTTTCCACCTCTTCATTTACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCAc > 1:3690588/1‑93 (MQ=255)
gTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCAc < 2:699009/93‑1 (MQ=255)
ttttCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCAcc < 1:5010309/93‑1 (MQ=255)
ttCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCga < 2:5884390/93‑1 (MQ=255)
ttCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCga < 1:3485298/93‑1 (MQ=255)
tCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCgag < 2:3085119/93‑1 (MQ=255)
cACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCgagga < 2:7128883/93‑1 (MQ=255)
ccTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGgana > 2:3817037/1‑93 (MQ=255)
ccTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGgaga < 2:2809934/93‑1 (MQ=255)
ctctTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGaa < 1:4268822/93‑1 (MQ=255)
ctctTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGaa < 1:1231068/93‑1 (MQ=255)
ttCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGt > 2:287239/1‑93 (MQ=255)
ttCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGt < 2:1358270/93‑1 (MQ=255)
ttCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGt < 2:4171569/93‑1 (MQ=255)
ttCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGt < 1:7038185/93‑1 (MQ=255)
tCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTc < 2:1196621/93‑1 (MQ=255)
cATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCa < 2:6524109/93‑1 (MQ=255)
cATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCa > 2:2076499/1‑93 (MQ=255)
aTTGACCAGCTTTTTGATCTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAg > 1:671419/1‑93 (MQ=255)
aTTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAg > 2:3301558/1‑93 (MQ=255)
aTTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAg > 1:6066572/1‑93 (MQ=255)
aTTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAg > 1:740693/1‑93 (MQ=255)
ttGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGa > 2:4073825/1‑93 (MQ=255)
aCCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACaa < 1:3207834/93‑1 (MQ=255)
ccAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACaaa > 1:2207706/1‑93 (MQ=255)
cAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAAc < 2:4636092/93‑1 (MQ=255)
gCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCt < 1:4816243/93‑1 (MQ=255)
gCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCt < 1:5757829/93‑1 (MQ=255)
gCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCt > 1:1964644/1‑93 (MQ=255)
tttttGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGt < 1:4012622/93‑1 (MQ=255)
ttttGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGtt > 1:5537358/1‑93 (MQ=255)
tttGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTc > 1:1267770/1‑93 (MQ=255)
ttGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCt < 2:6471456/93‑1 (MQ=255)
ttGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCt > 1:4695747/1‑93 (MQ=255)
gAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGt > 1:719043/1‑93 (MQ=255)
gAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGt > 2:6222775/1‑93 (MQ=255)
aaCTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTa < 1:5285344/93‑1 (MQ=255)
aCTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTAt > 1:4450294/1‑93 (MQ=255)
ctctTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTAtt < 1:3304921/93‑1 (MQ=255)
ctctTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTAtt < 1:4777074/93‑1 (MQ=255)
ctTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCg < 2:4818443/93‑1 (MQ=255)
|
GACGGGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCG > NC_000913/3116400‑3116581
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACGGGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGG > NC_000913/3116400‑3116585
|
GACGGGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTC < SRR4302542.2639487/94‑1 (MQ=60)
ACGGGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCG < SRR4302542.1467037/94‑1 (MQ=60)
GGGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGT > SRR4302542.3630657/1‑94 (MQ=60)
GGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTG < SRR4302542.2523539/94‑1 (MQ=60)
CGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAG > SRR4302542.5225437/1‑94 (MQ=60)
GACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGA > SRR4302542.5381126/1‑94 (MQ=60)
ACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGAT < SRR4302542.3163792/94‑1 (MQ=60)
CGGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATC > SRR4302542.4921804/1‑94 (MQ=60)
CCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATC > SRR4302542.4263018/1‑94 (MQ=60)
CGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCG < SRR4302542.4095772/94‑1 (MQ=60)
GGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGA < SRR4302542.2117587/94‑1 (MQ=60)
GTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGAT < SRR4302542.6961085/94‑1 (MQ=60)
GTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGAT < SRR4302542.2932830/94‑1 (MQ=60)
TGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATT < SRR4302542.5602751/94‑1 (MQ=60)
TGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATT > SRR4302542.1499614/1‑94 (MQ=60)
TGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATT > SRR4302542.2788932/1‑94 (MQ=60)
TGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATT < SRR4302542.3046591/94‑1 (MQ=60)
GAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTT < SRR4302542.6464843/94‑1 (MQ=60)
AGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGC > SRR4302542.5773663/1‑94 (MQ=60)
AGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGC > SRR4302542.7599241/1‑94 (MQ=60)
GTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCT < SRR4302542.1037882/94‑1 (MQ=60)
GTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCT > SRR4302542.298348/1‑94 (MQ=60)
GTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCT > SRR4302542.6937468/1‑94 (MQ=60)
GTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCT > SRR4302542.7261148/1‑94 (MQ=60)
TATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTT > SRR4302542.4646119/1‑94 (MQ=60)
ATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTA < SRR4302542.983601/94‑1 (MQ=60)
ATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTA > SRR4302542.2367232/1‑94 (MQ=60)
TGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTAT < SRR4302542.1199074/94‑1 (MQ=60)
GAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATA < SRR4302542.1995622/94‑1 (MQ=60)
AGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATAC > SRR4302542.4550468/1‑94 (MQ=60)
AGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATAC < SRR4302542.1849748/94‑1 (MQ=60)
AGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATAC < SRR4302542.3775475/94‑1 (MQ=60)
AGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATAC < SRR4302542.5944872/94‑1 (MQ=60)
GTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACA < SRR4302542.5932953/94‑1 (MQ=60)
TGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAG < SRR4302542.702632/94‑1 (MQ=60)
TGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAG > SRR4302542.7128184/1‑94 (MQ=60)
GGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGC < SRR4302542.7486252/94‑1 (MQ=60)
GATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCG < SRR4302542.1268790/94‑1 (MQ=60)
GATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCG < SRR4302542.3023053/94‑1 (MQ=60)
GATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCG > SRR4302542.7394588/1‑94 (MQ=60)
GCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTC < SRR4302542.367529/94‑1 (MQ=60)
GCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTC < SRR4302542.2766836/94‑1 (MQ=60)
CGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCG > SRR4302542.242836/1‑94 (MQ=60)
CGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCG < SRR4302542.1767860/94‑1 (MQ=60)
GCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGA > SRR4302542.4236425/1‑94 (MQ=60)
CTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAA > SRR4302542.845701/1‑94 (MQ=60)
TTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAG < SRR4302542.3498793/94‑1 (MQ=60)
TTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAG > SRR4302542.6296595/1‑94 (MQ=60)
TTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAG > SRR4302542.3301145/1‑94 (MQ=60)
TTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAG < SRR4302542.7000463/94‑1 (MQ=60)
TTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTAAACAGCGAGTCGAAG < SRR4302542.3719425/94‑1 (MQ=60)
TTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGC < SRR4302542.1792526/94‑1 (MQ=60)
TATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCG < SRR4302542.3743683/94‑1 (MQ=60)
TATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCG < SRR4302542.653259/94‑1 (MQ=60)
TCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTT < SRR4302542.1412559/94‑1 (MQ=60)
CGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTT < SRR4302542.301567/94‑1 (MQ=60)
CGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTT < SRR4302542.1568203/94‑1 (MQ=60)
CGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTT > SRR4302542.2361047/1‑94 (MQ=60)
GGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTA > SRR4302542.1842617/1‑94 (MQ=60)
GGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTA > SRR4302542.6431408/1‑94 (MQ=60)
GTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTAC < SRR4302542.1424641/94‑1 (MQ=60)
TCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACT < SRR4302542.1860400/94‑1 (MQ=60)
TCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACT < SRR4302542.3683974/94‑1 (MQ=60)
TCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACT < SRR4302542.2861792/94‑1 (MQ=60)
CGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTC > SRR4302542.4491569/1‑94 (MQ=60)
CGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTC > SRR4302542.5948276/1‑94 (MQ=60)
CGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTC > SRR4302542.4855070/1‑94 (MQ=60)
CGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTC > SRR4302542.6591743/1‑94 (MQ=60)
CGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTC > SRR4302542.3487675/1‑94 (MQ=60)
CGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTC > SRR4302542.3377737/1‑94 (MQ=60)
GCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCT < SRR4302542.6617273/94‑1 (MQ=60)
CAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTC > SRR4302542.4466447/1‑94 (MQ=60)
CAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTC > SRR4302542.5729122/1‑94 (MQ=60)
CAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTC > SRR4302542.1473884/1‑94 (MQ=60)
AGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCG > SRR4302542.6192978/1‑94 (MQ=60)
AGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCG < SRR4302542.3080418/94‑1 (MQ=60)
GCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGA > SRR4302542.7478478/1‑94 (MQ=60)
ATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATC < SRR4302542.2264487/94‑1 (MQ=60)
ATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATC > SRR4302542.1756398/1‑94 (MQ=60)
ATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATC < SRR4302542.316970/94‑1 (MQ=60)
ATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATC > SRR4302542.7420720/1‑94 (MQ=60)
ATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATC > SRR4302542.5397604/1‑94 (MQ=60)
TTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCA > SRR4302542.5994168/1‑94 (MQ=60)
TGTTTTCCACCTCTTCATTTACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCAC > SRR4302542.3727111/1‑94 (MQ=60)
GTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACC < SRR4302542.2386040/94‑1 (MQ=60)
TTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCG < SRR4302542.5058972/94‑1 (MQ=60)
TTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGA < SRR4302542.3513013/94‑1 (MQ=60)
TTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAG < SRR4302542.936608/94‑1 (MQ=60)
TTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAG < SRR4302542.713111/94‑1 (MQ=60)
TTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAG < SRR4302542.6727438/94‑1 (MQ=60)
TTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAG < SRR4302542.3517903/94‑1 (MQ=60)
TTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAG < SRR4302542.4495897/94‑1 (MQ=60)
TCCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGG < SRR4302542.1001395/94‑1 (MQ=60)
CCACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGA > SRR4302542.6690258/1‑94 (MQ=60)
ACCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGA < SRR4302542.915434/94‑1 (MQ=60)
CCTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAA > SRR4302542.5708072/1‑94 (MQ=60)
CTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAAC > SRR4302542.3203456/1‑94 (MQ=60)
CTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAAC > SRR4302542.3146685/1‑94 (MQ=60)
CTCTTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAAC < SRR4302542.4310832/94‑1 (MQ=60)
CTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAAC < SRR4302542.1241655/94‑1 (MQ=60)
CTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGT < SRR4302542.536829/94‑1 (MQ=60)
TTCATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTC < SRR4302542.7087183/94‑1 (MQ=60)
TTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTC < SRR4302542.7107313/94‑1 (MQ=60)
TCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCA < SRR4302542.4266134/94‑1 (MQ=60)
CATTGACCAGCTTTTTGATCTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAG > SRR4302542.677208/1‑94 (MQ=60)
CATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTGTACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAG > SRR4302542.1478784/1‑94 (MQ=60)
CATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAG > SRR4302542.747119/1‑94 (MQ=60)
CATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAG < SRR4302542.3563922/94‑1 (MQ=60)
CATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAG > SRR4302542.6125328/1‑94 (MQ=60)
ATTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGA > SRR4302542.4779351/1‑94 (MQ=60)
ATTGACCAGCTTTTTGAACTCTTCCGGAGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGA > SRR4302542.3326185/1‑94 (MQ=60)
TTGACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGAC < SRR4302542.4675795/94‑1 (MQ=60)
TGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACA < SRR4302542.3647604/94‑1 (MQ=60)
GACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAA < SRR4302542.575343/94‑1 (MQ=60)
ACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAA > SRR4302542.2226704/1‑94 (MQ=60)
ACCAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAA < SRR4302542.3238215/94‑1 (MQ=60)
CAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACC > SRR4302542.6972780/1‑94 (MQ=60)
CAGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACC > SRR4302542.7095406/1‑94 (MQ=60)
AGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCT > SRR4302542.1981623/1‑94 (MQ=60)
AGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCT > SRR4302542.124563/1‑94 (MQ=60)
AGCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCT < SRR4302542.6536480/94‑1 (MQ=60)
GCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTG < SRR4302542.5813720/94‑1 (MQ=60)
GCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTG < SRR4302542.4863179/94‑1 (MQ=60)
GCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTG < SRR4302542.3557239/94‑1 (MQ=60)
GCTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTG > SRR4302542.4830394/1‑94 (MQ=60)
CTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGT > SRR4302542.685963/1‑94 (MQ=60)
CTTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGT > SRR4302542.4187151/1‑94 (MQ=60)
TTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTT < SRR4302542.595928/94‑1 (MQ=60)
TTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTT > SRR4302542.5591185/1‑94 (MQ=60)
TTTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTT < SRR4302542.4052220/94‑1 (MQ=60)
TTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTT < SRR4302542.474495/94‑1 (MQ=60)
TTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTC > SRR4302542.2401173/1‑94 (MQ=60)
TTTTGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTC > SRR4302542.1278666/1‑94 (MQ=60)
TTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCT > SRR4302542.4741589/1‑94 (MQ=60)
TGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGT > SRR4302542.725239/1‑94 (MQ=60)
TGAACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGCTCTGT > SRR4302542.5178080/1‑94 (MQ=60)
AACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTAT > SRR4302542.3001372/1‑94 (MQ=60)
AACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTAT > SRR4302542.4884351/1‑94 (MQ=60)
AACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTAT > SRR4302542.4493940/1‑94 (MQ=60)
AACTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTAT < SRR4302542.5336730/94‑1 (MQ=60)
CTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTC < SRR4302542.4823635/94‑1 (MQ=60)
CTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTC < SRR4302542.3084422/94‑1 (MQ=60)
CTCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTC < SRR4302542.3336088/94‑1 (MQ=60)
TCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCG < SRR4302542.3371697/94‑1 (MQ=60)
TCTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCG < SRR4302542.1704167/94‑1 (MQ=60)
CTTTCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGC > SRR4302542.6636438/1‑94 (MQ=60)
TCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGG < SRR4302542.6403756/94‑1 (MQ=60)
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GACGGGCACGACCGGTGAAGTATGAGTGGATGGCGCTTTATCGGTCGCAGCATTGTTTTCCACCTCTTCATTGACCAGCTTTTTGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGG > NC_000913/3116400‑3116585
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
