Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,208,504 |
T→C |
V28A (GTT→GCT) |
rpsU → |
30S ribosomal subunit protein S21 |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,208,504 | 0 | T | C | 86.5%
| 666.1
/ 91.7
| 274 | V28A (GTT→GCT) | rpsU | 30S ribosomal subunit protein S21 |
| Reads supporting (aligned to +/- strand): ref base T (23/14); new base C (132/105); total (155/119) |
| Fisher's exact test for biased strand distribution p-value = 4.82e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.30e-01 |
Only 100 of 282 total aligned reads displayed.
AGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGA > NC_000913/3208414‑3208593
|
agagGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTc > 1:16272/1‑93 (MQ=255)
gagGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGctct < 1:1178097/93‑1 (MQ=255)
gagGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGctct > 2:5906023/1‑93 (MQ=255)
ggCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTgg > 1:6410988/1‑93 (MQ=255)
ggCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTgg > 1:4922153/1‑93 (MQ=255)
ggCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTgg > 1:2668796/1‑93 (MQ=255)
gCAAATGCCGGTAATTAAAGTACGTGAAAAGGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGc < 1:2152697/93‑1 (MQ=255)
cacaTGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCg > 1:541622/1‑93 (MQ=255)
caTGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGa > 2:3987928/1‑93 (MQ=255)
caTGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGa < 1:423661/93‑1 (MQ=255)
aTGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGaa > 1:333276/1‑93 (MQ=255)
aTGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGaa > 2:7318211/1‑93 (MQ=255)
gCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGt < 1:4972201/93‑1 (MQ=255)
ccGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGtt < 1:2369471/93‑1 (MQ=255)
cGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTtc > 1:965111/1‑93 (MQ=255)
ggTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTtcg > 1:6524707/1‑93 (MQ=255)
gTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTtcgt < 1:188346/93‑1 (MQ=255)
tAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTtcgtc > 1:6483011/1‑93 (MQ=255)
tAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTtcgtc < 2:449874/93‑1 (MQ=255)
tAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTtcgtc > 2:2782286/1‑93 (MQ=255)
aaTTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTtcgtcg > 2:6844358/1‑93 (MQ=255)
ttAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTtcgtcgtc > 2:2711080/1‑93 (MQ=255)
aaGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTg > 1:1933431/1‑93 (MQ=255)
gTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAg > 2:5859765/1‑93 (MQ=255)
aCGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGtt > 2:5132773/1‑93 (MQ=255)
aCGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGtt < 1:5703698/93‑1 (MQ=255)
gTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCt > 2:3341877/1‑93 (MQ=255)
tGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTa < 1:5506482/93‑1 (MQ=255)
tGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTa < 1:4283769/93‑1 (MQ=255)
tGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTa > 2:6094870/1‑93 (MQ=255)
gAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTAt < 2:7162153/93‑1 (MQ=255)
gAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTAt < 1:3492116/93‑1 (MQ=255)
cGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGaaaa > 2:5607059/1‑93 (MQ=255)
gAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGaaaaa > 2:1447898/1‑93 (MQ=255)
aGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAAc > 1:6145251/1‑93 (MQ=255)
aGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAAc < 1:1490044/93‑1 (MQ=255)
aGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAAc > 2:1384871/1‑93 (MQ=255)
gCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAAcc < 2:5758071/93‑1 (MQ=255)
ccGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCg > 2:4087471/1‑93 (MQ=255)
cGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGa < 2:2638780/93‑1 (MQ=255)
cGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGa > 2:6866968/1‑93 (MQ=255)
cGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGa > 1:2826556/1‑93 (MQ=255)
cGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGa < 2:4610348/93‑1 (MQ=255)
gTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGAc < 1:2279002/93‑1 (MQ=255)
ttCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACt > 1:3848319/1‑93 (MQ=255)
ttCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACt > 2:4639285/1‑93 (MQ=255)
ttCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACt > 2:493339/1‑93 (MQ=255)
ttCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACt > 1:4640190/1‑93 (MQ=255)
tCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTa > 1:619403/1‑93 (MQ=255)
gACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTAcc > 1:7312136/1‑93 (MQ=255)
gACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTAcc > 1:4834177/1‑93 (MQ=255)
cGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGa < 2:6235700/93‑1 (MQ=255)
gTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGaa < 1:3096207/93‑1 (MQ=255)
gCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGt < 1:6684932/93‑1 (MQ=255)
gCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGt < 2:2906217/93‑1 (MQ=255)
ctctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTa < 2:6520902/93‑1 (MQ=255)
ctctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTa < 1:6633813/93‑1 (MQ=255)
ctctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTa > 1:691358/1‑93 (MQ=255)
tctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTaa > 1:7143404/1‑93 (MQ=255)
tctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTaa > 2:3720361/1‑93 (MQ=255)
tctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTaa > 1:2562044/1‑93 (MQ=255)
ctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAg < 1:3990268/93‑1 (MQ=255)
tGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAgc > 2:3969530/1‑93 (MQ=255)
tGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAgc > 1:833596/1‑93 (MQ=255)
tGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAgc < 1:1841020/93‑1 (MQ=255)
gCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAgcg > 2:1218091/1‑93 (MQ=255)
cGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAgcgc > 1:6002379/1‑93 (MQ=255)
cGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAgcgc < 1:5103013/93‑1 (MQ=255)
gTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAgcgcg > 1:6332640/1‑93 (MQ=255)
cTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTaa > 2:2529665/1‑93 (MQ=255)
aGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCtt > 2:2334399/1‑93 (MQ=255)
gCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTc < 1:2439170/93‑1 (MQ=255)
gCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTc < 1:1770982/93‑1 (MQ=255)
gCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTc > 1:5634845/1‑93 (MQ=255)
cGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCt < 2:201004/93‑1 (MQ=255)
gTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTg > 1:381490/1‑93 (MQ=255)
gTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTg > 2:1076852/1‑93 (MQ=255)
tCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCa < 1:4142969/93‑1 (MQ=255)
tCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCa < 1:5470396/93‑1 (MQ=255)
ccTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAg < 2:2159299/93‑1 (MQ=255)
cTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGt > 1:1271113/1‑93 (MQ=255)
cTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGt < 2:4799572/93‑1 (MQ=255)
cTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGt > 1:7211308/1‑93 (MQ=255)
tGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTg > 2:4248868/1‑93 (MQ=255)
gCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGa > 2:405601/1‑93 (MQ=255)
cGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGaa < 2:5461264/93‑1 (MQ=255)
gAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGaaa < 2:1898477/93‑1 (MQ=255)
gAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGaaa < 1:3619093/93‑1 (MQ=255)
gAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGaaa < 2:6556630/93‑1 (MQ=255)
aaaaaGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAAc < 2:767298/93‑1 (MQ=255)
aaaaGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACg > 2:7008833/1‑93 (MQ=255)
aaaGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGt < 2:3755010/93‑1 (MQ=255)
aaaGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGt > 1:4519133/1‑93 (MQ=255)
gCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCAc > 1:1597799/1‑93 (MQ=255)
gCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCAc < 1:6829261/93‑1 (MQ=255)
cAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCAcg > 2:4740035/1‑93 (MQ=255)
cAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCAcg > 2:3125241/1‑93 (MQ=255)
cAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCCCTAAAGCTTCTGCAGTGAAACGTCAcg < 2:6414945/93‑1 (MQ=255)
aGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCAcgc < 2:6737152/93‑1 (MQ=255)
gtgcTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCga > 2:3609944/1‑93 (MQ=255)
|
AGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGA > NC_000913/3208414‑3208593
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAA > NC_000913/3208411‑3208597
|
GTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGC < SRR4302542.7150239/94‑1 (MQ=60)
GTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGC < SRR4302542.6197270/94‑1 (MQ=60)
TGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCT > SRR4302542.226997/1‑94 (MQ=60)
GAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTC > SRR4302542.4774922/1‑94 (MQ=60)
GAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTC > SRR4302542.16416/1‑94 (MQ=60)
AGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT < SRR4302542.5003568/94‑1 (MQ=60)
GAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTG < SRR4302542.1188274/94‑1 (MQ=60)
GAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTG < SRR4302542.2640130/94‑1 (MQ=60)
GAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTG < SRR4302542.684611/94‑1 (MQ=60)
GAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTG < SRR4302542.6354716/94‑1 (MQ=60)
GAGACACATCCCGGTAATTAAAGTACGGGAAAGCGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTG < SRR4302542.6963611/94‑1 (MQ=60)
AGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGG > SRR4302542.5552857/1‑94 (MQ=60)
AGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGG > SRR4302542.2694553/1‑94 (MQ=60)
AGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGG > SRR4302542.2753962/1‑94 (MQ=60)
AGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGG > SRR4302542.4970006/1‑94 (MQ=60)
AGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGG > SRR4302542.649708/1‑94 (MQ=60)
AGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGG > SRR4302542.6474163/1‑94 (MQ=60)
ggcgaATGCCGATAATTAAAGTACGAGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGC < SRR4302542.5908367/89‑1 (MQ=60)
GGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGC < SRR4302542.640372/94‑1 (MQ=60)
GGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGC < SRR4302542.2615228/94‑1 (MQ=60)
GGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGC < SRR4302542.2327996/94‑1 (MQ=60)
GCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCG > SRR4302542.546306/1‑94 (MQ=60)
GCAAATGCCGGTAATTAAAGTACGTGAAAAGGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCG < SRR4302542.2171247/94‑1 (MQ=60)
CACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGG > SRR4302542.4437890/1‑94 (MQ=60)
CACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGG > SRR4302542.119791/1‑94 (MQ=60)
ACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGA > SRR4302542.3875026/1‑94 (MQ=60)
ACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGA < SRR4302542.1543995/94‑1 (MQ=60)
CATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAA > SRR4302542.336169/1‑94 (MQ=60)
CATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAA < SRR4302542.427295/94‑1 (MQ=60)
ATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAG > SRR4302542.6619352/1‑94 (MQ=60)
GCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTT < SRR4302542.5020471/94‑1 (MQ=60)
GCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTT < SRR4302542.6156458/94‑1 (MQ=60)
CCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTC < SRR4302542.2839743/94‑1 (MQ=60)
CCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTC > SRR4302542.973399/1‑94 (MQ=60)
CCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTC < SRR4302542.7121544/94‑1 (MQ=60)
CCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTC < SRR4302542.2390182/94‑1 (MQ=60)
CCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTC < SRR4302542.2375872/94‑1 (MQ=60)
CGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCG > SRR4302542.867502/1‑94 (MQ=60)
CGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCG > SRR4302542.6589004/1‑94 (MQ=60)
GTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTC > SRR4302542.6546885/1‑94 (MQ=60)
GTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTC < SRR4302542.1629258/94‑1 (MQ=60)
GTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTC > SRR4302542.1008399/1‑94 (MQ=60)
GTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTC < SRR4302542.189941/94‑1 (MQ=60)
AATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGT > SRR4302542.6943548/1‑94 (MQ=60)
AATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGT > SRR4302542.4205027/1‑94 (MQ=60)
TAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGT > SRR4302542.2475652/1‑94 (MQ=60)
AAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTG > SRR4302542.1950132/1‑94 (MQ=60)
AAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTG > SRR4302542.639528/1‑94 (MQ=60)
AGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAG < SRR4302542.5165750/94‑1 (MQ=60)
GTCCGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGT < SRR4302542.7339635/94‑1 (MQ=60)
GTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGT > SRR4302542.4288411/1‑94 (MQ=60)
GTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGT < SRR4302542.6117585/94‑1 (MQ=60)
ACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTC < SRR4302542.5759064/94‑1 (MQ=60)
CGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCT < SRR4302542.4265923/94‑1 (MQ=60)
GTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTA > SRR4302542.3821979/1‑94 (MQ=60)
TGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTAT < SRR4302542.5559997/94‑1 (MQ=60)
TGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTAT < SRR4302542.4325904/94‑1 (MQ=60)
TGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTAT > SRR4302542.5866361/1‑94 (MQ=60)
GAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATG < SRR4302542.3524770/94‑1 (MQ=60)
AAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGA > SRR4302542.1926856/1‑94 (MQ=60)
AAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAA < SRR4302542.2238099/94‑1 (MQ=60)
AACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAA < SRR4302542.1863411/94‑1 (MQ=60)
AACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAA > SRR4302542.4095860/1‑94 (MQ=60)
ACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAA < SRR4302542.6260421/94‑1 (MQ=60)
CGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAA > SRR4302542.6523256/1‑94 (MQ=60)
GGGCCGCTCGACGGAGCCCTCCGTCGCTTCAAGCGTTCCTGCGAAACCGCAGGTGTTCCGGCGGAAGCTTGTCGTCGTGtgttcggcataatac > SRR4302542.7475788/1‑79 (MQ=24)
GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAAC > SRR4302542.6204706/1‑94 (MQ=60)
AGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACC < SRR4302542.1502926/94‑1 (MQ=60)
GCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCG < SRR4302542.5508619/94‑1 (MQ=60)
CCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGA > SRR4302542.2853731/1‑94 (MQ=60)
CGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGAC > SRR4302542.5638788/1‑94 (MQ=60)
GTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACT > SRR4302542.3886345/1‑94 (MQ=60)
GTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACT < SRR4302542.3373324/94‑1 (MQ=60)
GTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGANN > SRR4302542.2259588/1‑94 (MQ=60)
GTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACT < SRR4302542.2298592/94‑1 (MQ=60)
GTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACT > SRR4302542.4685529/1‑94 (MQ=60)
gtcggtttttcatagaactcacgacgacgaaattcccAAAAAGCAGGGGCTCTGGCGGAAGTTCGTCGTCGTGAGGTCTATGAAAAACCGACTA > SRR4302542.6451503/38‑94 (MQ=60)
TTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTA > SRR4302542.624728/1‑94 (MQ=60)
TTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTA < SRR4302542.2403857/94‑1 (MQ=60)
TTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTA < SRR4302542.3214295/94‑1 (MQ=60)
CGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACC > SRR4302542.4881271/1‑94 (MQ=60)
CGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACC > SRR4302542.7383758/1‑94 (MQ=60)
GACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCG > SRR4302542.7596607/1‑94 (MQ=60)
GACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCG < SRR4302542.1807000/94‑1 (MQ=60)
GACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCG > SRR4302542.5861270/1‑94 (MQ=60)
GTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAAC < SRR4302542.3125644/94‑1 (MQ=60)
GTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAAC > SRR4302542.1438002/1‑94 (MQ=60)
AGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGT > SRR4302542.2494024/1‑94 (MQ=60)
AGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGT > SRR4302542.6584526/1‑94 (MQ=60)
AGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGT > SRR4302542.7262782/1‑94 (MQ=60)
AGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGT < SRR4302542.5003827/94‑1 (MQ=60)
GCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTA > SRR4302542.697333/1‑94 (MQ=60)
GCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTA < SRR4302542.6750776/94‑1 (MQ=60)
CTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAA > SRR4302542.3550491/1‑94 (MQ=60)
CTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAA > SRR4302542.1343143/1‑94 (MQ=60)
CTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAA < SRR4302542.6699208/94‑1 (MQ=60)
CTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAA > SRR4302542.7213503/1‑94 (MQ=60)
CTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAA > SRR4302542.2586880/1‑94 (MQ=60)
CTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAA > SRR4302542.1771336/1‑94 (MQ=60)
CTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGC > SRR4302542.840799/1‑94 (MQ=60)
CTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGC < SRR4302542.5643704/94‑1 (MQ=60)
CTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGC < SRR4302542.4029638/94‑1 (MQ=60)
TGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCG < SRR4302542.1856956/94‑1 (MQ=60)
TGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCG < SRR4302542.5706095/94‑1 (MQ=60)
TGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCG > SRR4302542.2076000/1‑94 (MQ=60)
GCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGC > SRR4302542.6060513/1‑94 (MQ=60)
CGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCG > SRR4302542.3832342/1‑94 (MQ=60)
CGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCG < SRR4302542.5152586/94‑1 (MQ=60)
CGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCG > SRR4302542.6395037/1‑94 (MQ=60)
CGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCG > SRR4302542.528702/1‑94 (MQ=60)
GTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTCCTATGAAAAACCGACTACCGAACGTAAGCGCGC < SRR4302542.5111514/94‑1 (MQ=60)
CGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTA > SRR4302542.1547927/1‑94 (MQ=60)
CGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTA > SRR4302542.1892274/1‑94 (MQ=60)
CGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTA > SRR4302542.5730261/1‑94 (MQ=60)
CGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTA > SRR4302542.6567701/1‑94 (MQ=60)
GCTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAA > SRR4302542.4914830/1‑94 (MQ=60)
CTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAA < SRR4302542.4953822/94‑1 (MQ=60)
CTTCAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAA > SRR4302542.1730236/1‑94 (MQ=60)
CAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGACGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCT > SRR4302542.3413539/1‑94 (MQ=60)
CAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCT < SRR4302542.4375587/94‑1 (MQ=60)
CAAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCT < SRR4302542.1949958/94‑1 (MQ=60)
AAGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTT < SRR4302542.5509416/94‑1 (MQ=60)
AGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTC > SRR4302542.5689554/1‑94 (MQ=60)
AGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTC > SRR4302542.6241601/1‑94 (MQ=60)
AGCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTC > SRR4302542.3878893/1‑94 (MQ=60)
GCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCT < SRR4302542.2462906/94‑1 (MQ=60)
GCGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCT < SRR4302542.1786334/94‑1 (MQ=60)
CGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTG > SRR4302542.951991/1‑94 (MQ=60)
CGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTG < SRR4302542.4576958/94‑1 (MQ=60)
CGTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTG > SRR4302542.384807/1‑94 (MQ=60)
GTTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGC > SRR4302542.3580946/1‑94 (MQ=60)
TTCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCA < SRR4302542.6676967/94‑1 (MQ=60)
TCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAG < SRR4302542.4183792/94‑1 (MQ=60)
TCCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAG < SRR4302542.5523539/94‑1 (MQ=60)
CCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGT > SRR4302542.1282032/1‑94 (MQ=60)
CCTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGT > SRR4302542.7282066/1‑94 (MQ=60)
CTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTG > SRR4302542.3940572/1‑94 (MQ=60)
CTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTG > SRR4302542.7224763/1‑94 (MQ=60)
CTGCGAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTG < SRR4302542.7315407/94‑1 (MQ=60)
GAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAAC < SRR4302542.3652812/94‑1 (MQ=60)
GAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAAC > SRR4302542.2076779/1‑94 (MQ=60)
GAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAAC < SRR4302542.4647458/94‑1 (MQ=60)
GAAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAAC > SRR4302542.2947071/1‑94 (MQ=60)
AAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACG > SRR4302542.1634382/1‑94 (MQ=60)
AAAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACG < SRR4302542.6699801/94‑1 (MQ=60)
AAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGT < SRR4302542.3969567/94‑1 (MQ=60)
AAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGT < SRR4302542.4318605/94‑1 (MQ=60)
AAAAGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGT > SRR4302542.4563411/1‑94 (MQ=60)
AGCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCAC > SRR4302542.1611599/1‑94 (MQ=60)
GCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACG < SRR4302542.6896378/94‑1 (MQ=60)
GCAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACG < SRR4302542.5070153/94‑1 (MQ=60)
CAGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGC > SRR4302542.2930493/1‑94 (MQ=60)
AGGTGCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCG < SRR4302542.7057980/94‑1 (MQ=60)
GCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGA > SRR4302542.3714625/1‑94 (MQ=60)
GCTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGA > SRR4302542.2487539/1‑94 (MQ=60)
CTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAA > SRR4302542.7211179/1‑94 (MQ=60)
CTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAA < SRR4302542.6848919/94‑1 (MQ=60)
CTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAA < SRR4302542.859035/94‑1 (MQ=60)
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GTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAA > NC_000913/3208411‑3208597
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |