Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,222,061 |
A→G |
K596K (AAA→AAG) |
b3076 → |
evolved beta‑D‑galactosidase alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,222,061 | 0 | A | G | 88.3%
| 817.4
/ 86.0
| 317 | K596K (AAA→AAG) | b3076 | evolved beta‑D‑galactosidase alpha subunit |
| Reads supporting (aligned to +/- strand): ref base A (16/21); new base G (141/139); total (157/160) |
| Fisher's exact test for biased strand distribution p-value = 4.85e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 318 total aligned reads displayed.
CTACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGAT > NC_000913/3221971‑3222151
|
anggcgactaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAgn < 2:5604467/93‑2 (MQ=255)
cggcgactaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGt > 2:5069650/1‑93 (MQ=255)
ggcgactaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGtt < 1:3167346/93‑1 (MQ=255)
gcgactaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTa > 2:3925699/1‑93 (MQ=255)
gcgactaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTa < 2:211062/93‑1 (MQ=255)
gcgactaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTa < 1:5939678/93‑1 (MQ=255)
gactaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATc < 2:910476/93‑1 (MQ=255)
actaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATcg < 2:3663689/93‑1 (MQ=255)
ctaTCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATcgc < 2:5795554/93‑1 (MQ=255)
ccAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCgg < 2:1188455/93‑1 (MQ=255)
caacaaCTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGt > 1:1407056/1‑93 (MQ=255)
aacaacTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTa < 1:7398820/93‑1 (MQ=255)
aacaacTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTa > 1:4945585/1‑93 (MQ=255)
aacaacTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTa > 2:5889740/1‑93 (MQ=255)
aacaacTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTa > 2:1947091/1‑93 (MQ=255)
acaacTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTaa > 1:5257207/1‑93 (MQ=255)
acaacTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTaa > 1:5521051/1‑93 (MQ=255)
acTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTaaaaa > 2:2738496/1‑93 (MQ=255)
tataACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATc > 1:5819685/1‑93 (MQ=255)
tataACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATc > 1:4709631/1‑93 (MQ=255)
tataACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATc > 2:705771/1‑93 (MQ=255)
tataACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATc < 2:6252775/93‑1 (MQ=255)
ataACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATcc > 1:1724782/1‑93 (MQ=255)
aaCTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCAc > 1:5439606/1‑93 (MQ=255)
aCTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCAcg < 1:6394449/93‑1 (MQ=255)
aCTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCAcg > 2:1635099/1‑93 (MQ=255)
cTTCTGTCTTGATGGTTTGATCTATTCCGATCGGACGTCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCAcgc < 1:7014523/93‑1 (MQ=255)
ttCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCAcgcg > 1:2171834/1‑93 (MQ=255)
cTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCAcgcgcg < 2:1348512/93‑1 (MQ=255)
tGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCgg < 1:2992738/93‑1 (MQ=255)
cTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGAt > 1:3434887/1‑93 (MQ=255)
ttGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATc < 1:2561370/93‑1 (MQ=255)
ttGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATc > 2:6830383/1‑93 (MQ=255)
ttGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATc < 2:605269/93‑1 (MQ=255)
ttGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATc > 1:3994348/1‑93 (MQ=255)
tGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCt < 2:2950937/93‑1 (MQ=255)
gATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTg > 2:3262971/1‑93 (MQ=255)
gATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTg > 2:2613443/1‑93 (MQ=255)
aTGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCCCCGGTAAAAATCCACGCGCGGGATCTGa < 2:1054821/93‑1 (MQ=255)
aTGGTTTGATCTATTCCGACCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGa < 2:5002756/93‑1 (MQ=255)
tGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGAc > 1:5634644/1‑93 (MQ=255)
ggTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACt < 2:2832100/93‑1 (MQ=255)
ggTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACt > 1:4775325/1‑93 (MQ=255)
gTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTc > 1:3916201/1‑93 (MQ=255)
gTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTc > 1:434715/1‑93 (MQ=255)
tttGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTcg > 1:3771789/1‑93 (MQ=255)
tttGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTcg > 1:1039219/1‑93 (MQ=255)
ttGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTcgc < 2:7264279/93‑1 (MQ=255)
ttGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTcgc < 1:1185331/93‑1 (MQ=255)
ttGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTcgc > 1:7179479/1‑93 (MQ=255)
tGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTcgcg < 1:3558337/93‑1 (MQ=255)
aTCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCgcggc > 2:2300636/1‑93 (MQ=255)
cTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGa < 1:3108404/93‑1 (MQ=255)
tATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAg > 2:6002745/1‑93 (MQ=255)
aTTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGt > 2:3969400/1‑93 (MQ=255)
aTTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGt > 1:5900997/1‑93 (MQ=255)
aTTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGt < 2:1788005/93‑1 (MQ=255)
ttCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGtt < 2:4075190/93‑1 (MQ=255)
ttCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGtt > 1:3700793/1‑93 (MQ=255)
ccGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACTCGCGGGATCTGACTCGCGGCGAGTTGa < 2:6418528/93‑1 (MQ=255)
ccGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGa > 1:5863133/1‑93 (MQ=255)
cGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGaa > 1:922897/1‑93 (MQ=255)
gATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGaaa < 2:1733322/93‑1 (MQ=255)
gATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGaaa < 1:3338013/93‑1 (MQ=255)
gATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGaaa > 1:5326764/1‑93 (MQ=255)
gATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGaaa < 2:79747/93‑1 (MQ=255)
aTCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAg < 2:1490850/93‑1 (MQ=255)
aTCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAg > 2:4162056/1‑93 (MQ=255)
cAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTc < 2:6685668/93‑1 (MQ=255)
aGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCg > 1:5992101/1‑93 (MQ=255)
gACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGa > 1:6793739/1‑93 (MQ=255)
gCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGaaaa < 2:3056709/93‑1 (MQ=255)
gggACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATaa > 1:6282296/1‑93 (MQ=255)
ggACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGCATCTGACTCGCGGCGAGTTGAAAGTCGAAAATaaa < 2:4525104/93‑1 (MQ=255)
ggACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATaaa > 2:4782555/1‑93 (MQ=255)
gACCGGGCCTGAAAAAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAAc > 2:6448210/1‑93 (MQ=255)
aCCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACt < 1:2302809/93‑1 (MQ=255)
aCCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACt < 1:490613/93‑1 (MQ=255)
ccGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACtg < 2:4312753/93‑1 (MQ=255)
cGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACtgt < 2:5958672/93‑1 (MQ=255)
cGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACtgt < 2:6199124/93‑1 (MQ=255)
cGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACtgt < 1:7455896/93‑1 (MQ=255)
gggCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACtgtg < 1:203006/93‑1 (MQ=255)
ccTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGtt < 1:1705321/93‑1 (MQ=255)
cTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGttt > 2:6555116/1‑93 (MQ=255)
cTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGttt > 1:7254193/1‑93 (MQ=255)
tGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTa > 2:5655221/1‑93 (MQ=255)
tGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTa > 1:4865074/1‑93 (MQ=255)
gAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTAc > 1:503554/1‑93 (MQ=255)
gAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTAc < 2:2498731/93‑1 (MQ=255)
aaGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCa < 2:4677151/93‑1 (MQ=255)
agagTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCAc > 1:4192900/1‑93 (MQ=255)
agagTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCAc < 2:2179408/93‑1 (MQ=255)
gagTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACg > 1:674024/1‑93 (MQ=255)
gagTACAAGCAGGTTATCGCGCCGCTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACg > 2:7116055/1‑93 (MQ=255)
agTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGc < 2:7431299/93‑1 (MQ=255)
gTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCt > 1:2842357/1‑93 (MQ=255)
cAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTtga < 1:1632101/93‑1 (MQ=255)
cAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTtga < 2:5433462/93‑1 (MQ=255)
cAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTtga < 2:5315871/93‑1 (MQ=255)
|
CTACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGAT > NC_000913/3221971‑3222151
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGATGAC > NC_000913/3221970‑3222154
|
ACTACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCA < SRR4302542.5380397/94‑1 (MQ=60)
ACTACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCA < SRR4302542.7490007/94‑1 (MQ=60)
CTACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAG > SRR4302542.5323818/1‑94 (MQ=60)
TACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCTATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGG < SRR4302542.4810033/94‑1 (MQ=60)
TACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGG < SRR4302542.401108/94‑1 (MQ=60)
ACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGT < SRR4302542.4923900/94‑1 (MQ=60)
GGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTA < SRR4302542.3197393/94‑1 (MQ=60)
GGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTA < SRR4302542.3724086/94‑1 (MQ=60)
GCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTAT < SRR4302542.5997219/94‑1 (MQ=60)
CGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATC < SRR4302542.893067/94‑1 (MQ=60)
CGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATC < SRR4302542.324404/94‑1 (MQ=60)
CGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATC < SRR4302542.5213152/94‑1 (MQ=60)
CGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATC < SRR4302542.4347810/94‑1 (MQ=60)
GACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCG > SRR4302542.2861938/1‑94 (MQ=60)
GACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCG < SRR4302542.3167572/94‑1 (MQ=60)
GACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCG < SRR4302542.4788326/94‑1 (MQ=60)
GACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCG > SRR4302542.4499487/1‑94 (MQ=60)
CTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCG < SRR4302542.1157323/94‑1 (MQ=60)
CTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCG < SRR4302542.7521563/94‑1 (MQ=60)
CTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCG < SRR4302542.5071896/94‑1 (MQ=60)
CTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCG > SRR4302542.4204627/1‑94 (MQ=60)
TATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGC > SRR4302542.3743120/1‑94 (MQ=60)
ATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCC > SRR4302542.7075844/1‑94 (MQ=60)
TCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCG > SRR4302542.2481753/1‑94 (MQ=60)
CCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGT > SRR4302542.4881864/1‑94 (MQ=60)
CCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGT > SRR4302542.1419222/1‑94 (MQ=60)
CCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGT > SRR4302542.5942837/1‑94 (MQ=60)
CAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTA > SRR4302542.2398536/1‑94 (MQ=60)
CAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTA > SRR4302542.4993636/1‑94 (MQ=60)
AACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAA > SRR4302542.5574704/1‑94 (MQ=60)
AACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAA > SRR4302542.5308304/1‑94 (MQ=60)
AACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAA < SRR4302542.7471229/94‑1 (MQ=60)
AACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAA > SRR4302542.4556487/1‑94 (MQ=60)
ACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAA > SRR4302542.29791/1‑94 (MQ=60)
ACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAA > SRR4302542.5037321/1‑94 (MQ=60)
CAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAA > SRR4302542.4986027/1‑94 (MQ=60)
CAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAA > SRR4302542.4983996/1‑94 (MQ=60)
CAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAA > SRR4302542.299232/1‑94 (MQ=60)
AACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAA > SRR4302542.6207602/1‑94 (MQ=60)
AACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAA < SRR4302542.7146317/94‑1 (MQ=60)
ACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAAT > SRR4302542.638006/1‑94 (MQ=60)
CTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATC > SRR4302542.5876186/1‑94 (MQ=60)
CTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATC > SRR4302542.4755566/1‑94 (MQ=60)
CTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATC > SRR4302542.5949808/1‑94 (MQ=60)
TATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCC > SRR4302542.5528581/1‑94 (MQ=60)
TATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCC < SRR4302542.3487189/94‑1 (MQ=60)
TATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCC > SRR4302542.1739752/1‑94 (MQ=60)
ATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCA < SRR4302542.2073757/94‑1 (MQ=60)
atACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCAC < SRR4302542.6860439/92‑1 (MQ=60)
TAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCAC > SRR4302542.5492456/1‑94 (MQ=60)
AACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACG > SRR4302542.5659073/1‑94 (MQ=60)
ACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGC < SRR4302542.6457442/94‑1 (MQ=60)
CTTCTGTCTTGATGGTTTGATCTATTCCGATCGGACGTCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCG < SRR4302542.7083416/94‑1 (MQ=60)
CTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCG > SRR4302542.2190532/1‑94 (MQ=60)
CTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCG < SRR4302542.3078381/94‑1 (MQ=60)
CTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCG < SRR4302542.939373/94‑1 (MQ=60)
TTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGC > SRR4302542.5901460/1‑94 (MQ=60)
CTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGG < SRR4302542.7448323/94‑1 (MQ=60)
CTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGG > SRR4302542.5784021/1‑94 (MQ=60)
TGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGG > SRR4302542.3780199/1‑94 (MQ=60)
TGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGG < SRR4302542.3021379/94‑1 (MQ=60)
GTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGA > SRR4302542.7295831/1‑94 (MQ=60)
GTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGA > SRR4302542.6822975/1‑94 (MQ=60)
TCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGAT > SRR4302542.3467045/1‑94 (MQ=60)
CTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATC > SRR4302542.4033751/1‑94 (MQ=60)
CTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATC > SRR4302542.1852762/1‑94 (MQ=60)
TTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCT < SRR4302542.2586197/94‑1 (MQ=60)
ATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGAC < SRR4302542.3534576/94‑1 (MQ=60)
ATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGAC > SRR4302542.5689351/1‑94 (MQ=60)
ATGGTTTGATCTATTCCGACCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGAC < SRR4302542.4017452/94‑1 (MQ=60)
TGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACT > SRR4302542.4821871/1‑94 (MQ=60)
TGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACT > SRR4302542.6371985/1‑94 (MQ=60)
GGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTC > SRR4302542.3954844/1‑94 (MQ=60)
GGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTC > SRR4302542.438476/1‑94 (MQ=60)
GTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCG > SRR4302542.6942151/1‑94 (MQ=60)
GTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCG > SRR4302542.5572831/1‑94 (MQ=60)
GTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCG > SRR4302542.1048146/1‑94 (MQ=60)
GTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCG > SRR4302542.4560954/1‑94 (MQ=60)
GTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCG > SRR4302542.3809092/1‑94 (MQ=60)
TTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGC > SRR4302542.7249897/1‑94 (MQ=60)
TTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCG < SRR4302542.1195551/94‑1 (MQ=60)
TGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTTCAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGG < SRR4302542.7442281/94‑1 (MQ=60)
TGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGG < SRR4302542.2304517/94‑1 (MQ=60)
TGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGG < SRR4302542.3591574/94‑1 (MQ=60)
GATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGC > SRR4302542.5058897/1‑94 (MQ=60)
ATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCG > SRR4302542.5719378/1‑94 (MQ=60)
ATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCG > SRR4302542.5437990/1‑94 (MQ=60)
CTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAG < SRR4302542.3137951/94‑1 (MQ=60)
CTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAG < SRR4302542.1738698/94‑1 (MQ=60)
TATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGT > SRR4302542.5958203/1‑94 (MQ=60)
TATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGT > SRR4302542.4933020/1‑94 (MQ=60)
TATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGT > SRR4302542.7324000/1‑94 (MQ=60)
TATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGT > SRR4302542.1665386/1‑94 (MQ=60)
ATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTT > SRR4302542.730862/1‑94 (MQ=60)
ATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTT > SRR4302542.1902981/1‑94 (MQ=60)
ATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTT > SRR4302542.3737416/1‑94 (MQ=60)
TTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTG > SRR4302542.3726376/1‑94 (MQ=60)
TTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTG < SRR4302542.3405781/94‑1 (MQ=60)
TCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGA > SRR4302542.5919983/1‑94 (MQ=60)
CCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAA > SRR4302542.930843/1‑94 (MQ=60)
CCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAA < SRR4302542.3395701/94‑1 (MQ=60)
CCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAA > SRR4302542.4843116/1‑94 (MQ=60)
CGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAA > SRR4302542.1681860/1‑94 (MQ=60)
CGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAA < SRR4302542.2118203/94‑1 (MQ=60)
CGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAA > SRR4302542.5378513/1‑94 (MQ=60)
GATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAG < SRR4302542.3369427/94‑1 (MQ=60)
GATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAG < SRR4302542.1362089/94‑1 (MQ=60)
GATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAG > SRR4302542.2216460/1‑94 (MQ=60)
CAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCG > SRR4302542.5373408/1‑94 (MQ=60)
CAGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCG > SRR4302542.6050140/1‑94 (MQ=60)
AGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGA < SRR4302542.3109496/94‑1 (MQ=60)
AGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGA < SRR4302542.3907173/94‑1 (MQ=60)
AGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGA > SRR4302542.631094/1‑94 (MQ=60)
AGACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGA > SRR4302542.6860547/1‑94 (MQ=60)
AGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGA < SRR4302542.6490464/94‑1 (MQ=60)
GACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAA < SRR4302542.3189336/94‑1 (MQ=60)
ACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAA < SRR4302542.5960995/94‑1 (MQ=60)
ACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAA > SRR4302542.1572214/1‑94 (MQ=60)
ACGCCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAA > SRR4302542.3221814/1‑94 (MQ=60)
CCGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATA < SRR4302542.7169048/94‑1 (MQ=60)
CGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAA < SRR4302542.136633/94‑1 (MQ=60)
CGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAA < SRR4302542.5863045/94‑1 (MQ=60)
CGGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAA > SRR4302542.6344206/1‑94 (MQ=60)
GGGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAA < SRR4302542.5914722/94‑1 (MQ=60)
GGACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAAC < SRR4302542.4290625/94‑1 (MQ=60)
GACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACT > SRR4302542.5975569/1‑94 (MQ=60)
GACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACT < SRR4302542.6033550/94‑1 (MQ=60)
GACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACT < SRR4302542.3038897/94‑1 (MQ=60)
ACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTG < SRR4302542.2322593/94‑1 (MQ=60)
ACCGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTG < SRR4302542.494851/94‑1 (MQ=60)
CGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTG < SRR4302542.1184039/94‑1 (MQ=60)
CGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTG < SRR4302542.1419669/94‑1 (MQ=60)
CGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTG < SRR4302542.545936/94‑1 (MQ=60)
CGGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTG < SRR4302542.7528908/94‑1 (MQ=60)
GGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGG < SRR4302542.204726/94‑1 (MQ=60)
GGGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGG < SRR4302542.6194655/94‑1 (MQ=60)
GGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGG < SRR4302542.6723829/94‑1 (MQ=60)
GGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGT < SRR4302542.7487864/94‑1 (MQ=60)
GGCCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGT > SRR4302542.5578808/1‑94 (MQ=60)
CCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTT < SRR4302542.1720103/94‑1 (MQ=60)
CCTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTT > SRR4302542.7325315/1‑94 (MQ=60)
CCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTT < SRR4302542.3926863/94‑1 (MQ=60)
CTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTA > SRR4302542.4912444/1‑94 (MQ=60)
CTGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTA < SRR4302542.264112/94‑1 (MQ=60)
TGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTAC > SRR4302542.507929/1‑94 (MQ=60)
TGAAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTAC > SRR4302542.1276252/1‑94 (MQ=60)
AAAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCA > SRR4302542.4117133/1‑94 (MQ=60)
AAGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCAC > SRR4302542.4234242/1‑94 (MQ=60)
AGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACG < SRR4302542.2031242/94‑1 (MQ=60)
AGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACG < SRR4302542.6006406/94‑1 (MQ=60)
AGAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACG > SRR4302542.679843/1‑94 (MQ=60)
AGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACC < SRR4302542.3707702/94‑1 (MQ=60)
GAGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGC < SRR4302542.806588/94‑1 (MQ=60)
AGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCT > SRR4302542.2869664/1‑94 (MQ=60)
AGTACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCT > SRR4302542.1730342/1‑94 (MQ=60)
TACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTG > SRR4302542.5190845/1‑94 (MQ=60)
ACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGTGTTGAAAaaacaaaaaaaaaaaaaaatttttattttttc > SRR4302542.5073694/1‑62 (MQ=60)
ACAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGA > SRR4302542.992473/1‑94 (MQ=60)
CAAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGAT < SRR4302542.1646181/94‑1 (MQ=60)
AAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATGAACTGTGGTTTACCACGCTTGATG > SRR4302542.1124298/1‑94 (MQ=60)
AAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGATG < SRR4302542.6550953/94‑1 (MQ=60)
AAGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGATG > SRR4302542.1285226/1‑94 (MQ=60)
AGCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGATGA > SRR4302542.5889468/1‑94 (MQ=60)
GCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGATGAC < SRR4302542.5481433/94‑1 (MQ=60)
GCAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGATGAC < SRR4302542.3135566/94‑1 (MQ=60)
ACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGATGAC > SRR4302542.2077970/1‑94 (MQ=60)
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ACTACGGCGACTATCCCAACAACTATAACTTCTGTCTTGATGGTTTGATCTATTCCGATCAGACGCCGGGACCGGGCCTGAAAGAGTACAAACAGGTTATCGCGCCGGTAAAAATCCACGCGCGGGATCTGACTCGCGGCGAGTTGAAAGTCGAAAATAAACTGTGGTTTACCACGCTTGATGAC > NC_000913/3221970‑3222154
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
