Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,302,454 |
(C)7→8 |
coding (1005/1245 nt) |
mtr ← |
tryptophan‑specific transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,302,447 | 1 | . | C | 85.1%
| 695.3
/ 118.7
| 242 | coding (1012/1245 nt) | mtr | tryptophan‑specific transport protein |
| Reads supporting (aligned to +/- strand): ref base . (18/18); new base C (90/116); total (108/134) |
| Fisher's exact test for biased strand distribution p-value = 5.86e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01 |
Only 100 of 267 total aligned reads displayed.
ACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGT > NC_000913/3302355‑3302539
|
aCGGGCTAACAGCGCCGGAACAATTGCCGCCTAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAg < 2:2533646/93‑1 (MQ=255)
ggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑ccc > 2:4958207/1‑93 (MQ=255)
ggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑ccc < 1:1504223/93‑1 (MQ=255)
ggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑ccc < 1:6716066/93‑1 (MQ=255)
gCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑cccc > 2:7250223/1‑93 (MQ=255)
gCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑cccc > 2:4307399/1‑93 (MQ=255)
aaCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑ccccccc > 1:7036389/1‑93 (MQ=255)
aCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑cccccccc > 1:913162/1‑92 (MQ=255)
cAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑ccccccccc > 1:429109/1‑91 (MQ=255)
gcgcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑ccccccccaca > 1:3359549/1‑89 (MQ=255)
gcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAAc < 2:479468/93‑1 (MQ=255)
gcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAAc > 2:4071689/1‑93 (MQ=255)
ccGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACt < 1:4668720/93‑1 (MQ=255)
cGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTg < 2:6947925/93‑1 (MQ=255)
ggAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTgg < 2:5685618/93‑1 (MQ=255)
aCAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑gg > 2:1875829/1‑93 (MQ=255)
aCAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑gg > 2:3345255/1‑93 (MQ=255)
cAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑ggg < 1:1144414/93‑1 (MQ=255)
aaTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑gggg < 2:4468981/93‑1 (MQ=255)
aaTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑gggg > 2:1493587/1‑93 (MQ=255)
aTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGc < 2:4564600/93‑1 (MQ=255)
tGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCaaa < 2:6245012/93‑1 (MQ=255)
cccAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTc < 2:5146986/93‑1 (MQ=255)
cccAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTc < 2:531007/93‑1 (MQ=255)
ccAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCa > 1:6482580/1‑93 (MQ=255)
cAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAg > 1:6864158/1‑93 (MQ=255)
cAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAg > 2:1284798/1‑93 (MQ=255)
aGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGc > 2:632453/1‑93 (MQ=255)
aGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCa > 2:2224718/1‑93 (MQ=255)
gATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCa < 1:1523859/93‑1 (MQ=255)
gATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGCGGGGGCAAAGGTCAGCa > 1:6228287/1‑93 (MQ=255)
aTGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCaa < 1:484023/93‑1 (MQ=255)
tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCaa < 1:800527/93‑1 (MQ=255)
ggTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATg > 1:2849122/1‑93 (MQ=255)
gTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGc < 2:2778627/93‑1 (MQ=255)
aGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCg < 2:2298639/93‑1 (MQ=255)
gCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCg < 1:3638212/93‑1 (MQ=255)
gCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGt > 1:1010771/1‑93 (MQ=255)
ccGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGtt < 2:4770741/93‑1 (MQ=255)
gCTAAACCAGCATAACCAAGGGCGTACAGGAACCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGtttt < 1:4476221/93‑1 (MQ=255)
cTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTc < 1:5417683/93‑1 (MQ=255)
tAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTc < 1:6067472/93‑1 (MQ=255)
tAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCaa < 2:5492498/93‑1 (MQ=255)
aaaCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCaa < 1:1868817/93‑1 (MQ=255)
aCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGc < 2:1057406/93‑1 (MQ=255)
ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCg < 2:4139551/93‑1 (MQ=255)
ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCg > 1:7279750/1‑93 (MQ=255)
ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCg > 2:2398710/1‑93 (MQ=255)
gCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGcc < 1:6869176/93‑1 (MQ=255)
gCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGcc > 1:5344179/1‑93 (MQ=255)
gCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGcc < 2:2031313/93‑1 (MQ=255)
cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGccc > 1:2245651/1‑93 (MQ=255)
cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCca > 1:6337845/1‑93 (MQ=255)
aTAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGGCAGCAATGCCGTTTTCAAGCGGCCca > 1:1282785/1‑93 (MQ=255)
aaCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCcaca < 1:7419483/93‑1 (MQ=255)
aCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAg > 2:6707864/1‑93 (MQ=255)
aCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAg < 2:3640637/93‑1 (MQ=255)
ccAATGGCGTACAGGAATCCGTTCTGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc < 2:2665275/93‑1 (MQ=255)
ccAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc < 2:3032030/93‑1 (MQ=255)
ccAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc > 1:321406/1‑93 (MQ=255)
cAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGcc > 2:4189306/1‑93 (MQ=255)
cAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGcc < 1:5475884/93‑1 (MQ=255)
cAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGcc < 1:5770359/93‑1 (MQ=255)
aaTGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCg > 2:3481927/1‑93 (MQ=255)
aTGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGa < 2:4862616/93‑1 (MQ=255)
aTGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGa < 2:810098/93‑1 (MQ=255)
tGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAg < 2:954829/93‑1 (MQ=255)
tGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAg < 1:3181920/93‑1 (MQ=255)
cGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc < 2:5636523/93‑1 (MQ=255)
cGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcg < 2:7280018/93‑1 (MQ=255)
gTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgt > 1:241867/1‑93 (MQ=255)
gTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgtc < 2:5870493/93‑1 (MQ=255)
tACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgtc < 1:6412405/93‑1 (MQ=255)
tACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgtc > 1:3880332/1‑93 (MQ=255)
tACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgtc > 1:413938/1‑93 (MQ=255)
aGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGaa < 2:5494892/93‑1 (MQ=255)
ggAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGaaa > 1:3331312/1‑93 (MQ=255)
gAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAc > 2:6063268/1‑93 (MQ=255)
aaTCCGTTCGGGAACAACAGCCCCCCCCCCACAACTGGC‑GGGGCAAAGGTCAGAAATGCCGTTTTCAAGCGGCCCACAGCCGAGCCGTCGaaa > 1:2949384/1‑93 (MQ=255)
aaTCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAcc > 2:1645272/1‑93 (MQ=255)
aTCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAcc > 2:6532797/1‑93 (MQ=255)
aTCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCa > 2:2925661/1‑93 (MQ=255)
aTCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCa < 2:1176563/93‑1 (MQ=255)
tCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCaa < 1:5641491/93‑1 (MQ=255)
gTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACa < 1:5526305/93‑1 (MQ=255)
gTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACa < 2:3163421/93‑1 (MQ=255)
gTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACa < 2:1039439/93‑1 (MQ=255)
ttCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAg < 2:6845550/93‑1 (MQ=255)
ttCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAg > 2:7434352/1‑93 (MQ=255)
ttCGGGAACAACAG‑‑‑‑CCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGAt > 1:5089398/1‑93 (MQ=255)
gggAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATc < 2:1948899/93‑1 (MQ=255)
ggAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATc < 1:5241578/93‑1 (MQ=255)
ggAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCt > 1:2095649/1‑93 (MQ=255)
ggAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCt < 2:6197178/93‑1 (MQ=255)
gAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTg > 2:2994636/1‑93 (MQ=255)
gAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTg > 1:4992095/1‑93 (MQ=255)
aacaacAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGc < 2:6165821/93‑1 (MQ=255)
aacaacAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGc < 1:7328494/93‑1 (MQ=255)
aacaacAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGcc < 1:6583694/93‑1 (MQ=255)
acaacaGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGcc > 1:5693573/1‑93 (MQ=255)
|
ACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGT > NC_000913/3302355‑3302539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > NC_000913/3302361‑3302547
|
TAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCC > SRR4302542.7105507/1‑94 (MQ=60)
AACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCC > SRR4302542.921036/1‑94 (MQ=60)
ACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCca > SRR4302542.3948134/1‑92 (MQ=60)
ACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCca > SRR4302542.432816/1‑92 (MQ=60)
ACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCCC > SRR4302542.432815/1‑94 (MQ=60)
CAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCcac > SRR4302542.7507790/1‑91 (MQ=60)
AGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACA > SRR4302542.6403958/1‑94 (MQ=60)
AGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACA > SRR4302542.3391128/1‑94 (MQ=60)
CGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAAC < SRR4302542.3932047/94‑1 (MQ=60)
CGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAAC < SRR4302542.7334193/94‑1 (MQ=60)
CGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACT > SRR4302542.3123524/1‑94 (MQ=60)
GCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAAC > SRR4302542.5479938/1‑94 (MQ=60)
GCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACT > SRR4302542.7260897/1‑94 (MQ=60)
GCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACT < SRR4302542.2812989/94‑1 (MQ=60)
CCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTG < SRR4302542.4714358/94‑1 (MQ=60)
CGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGG > SRR4302542.5519174/1‑94 (MQ=60)
GGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC > SRR4302542.4281566/1‑94 (MQ=60)
GAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GG > SRR4302542.5815776/1‑94 (MQ=60)
ACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGG > SRR4302542.5930874/1‑94 (MQ=60)
ACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGG < SRR4302542.737901/94‑1 (MQ=60)
CAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGG < SRR4302542.1154218/94‑1 (MQ=60)
ATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGC < SRR4302542.6735688/94‑1 (MQ=60)
TTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAA < SRR4302542.323022/94‑1 (MQ=60)
GCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAA < SRR4302542.5068322/94‑1 (MQ=60)
GCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAG < SRR4302542.7426984/94‑1 (MQ=60)
CCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGG < SRR4302542.2021918/94‑1 (MQ=60)
CCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGG < SRR4302542.5630601/94‑1 (MQ=60)
CGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGT < SRR4302542.3828365/94‑1 (MQ=60)
CGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGT < SRR4302542.1239265/94‑1 (MQ=60)
CCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCA > SRR4302542.6546449/1‑94 (MQ=60)
CCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCA > SRR4302542.2366067/1‑94 (MQ=60)
CCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCA < SRR4302542.6192210/94‑1 (MQ=60)
CCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCA < SRR4302542.306811/94‑1 (MQ=60)
CCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAG > SRR4302542.6931597/1‑94 (MQ=60)
CCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAG > SRR4302542.5730357/1‑94 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCA < SRR4302542.6439206/94‑1 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGCGGGGGCAAAGGTCAGCA > SRR4302542.6289613/1‑94 (MQ=60)
AGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAA > SRR4302542.4326662/1‑94 (MQ=60)
GATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAA < SRR4302542.1537018/94‑1 (MQ=60)
GATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAA > SRR4302542.4549383/1‑94 (MQ=60)
ATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAAT < SRR4302542.1268729/94‑1 (MQ=60)
ATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAAT < SRR4302542.5700758/94‑1 (MQ=60)
ATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAAT < SRR4302542.488218/94‑1 (MQ=60)
ATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAAT > SRR4302542.4941386/1‑94 (MQ=60)
TGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAAT < SRR4302542.807410/94‑1 (MQ=60)
TGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATG < SRR4302542.5458185/94‑1 (MQ=60)
TGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATG > SRR4302542.2876513/1‑94 (MQ=60)
GGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGC < SRR4302542.3456787/94‑1 (MQ=60)
AGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGT > SRR4302542.1019478/1‑94 (MQ=60)
GCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGT < SRR4302542.3672136/94‑1 (MQ=60)
CCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTT > SRR4302542.4640568/1‑94 (MQ=60)
CGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTT > SRR4302542.3372950/1‑94 (MQ=60)
GCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTC < SRR4302542.2039777/94‑1 (MQ=60)
GCTAAACCAGCATAACCAAGGGCGTACAGGAACCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTC < SRR4302542.4520121/94‑1 (MQ=60)
CTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCA < SRR4302542.6513033/94‑1 (MQ=60)
CTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCA < SRR4302542.5470288/94‑1 (MQ=60)
CTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCA > SRR4302542.7279823/1‑94 (MQ=60)
TAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCA < SRR4302542.6126235/94‑1 (MQ=60)
AAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAG < SRR4302542.1884977/94‑1 (MQ=60)
AAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAG > SRR4302542.2630289/1‑94 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAG < SRR4302542.4844622/94‑1 (MQ=60)
AACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGC > SRR4302542.6818875/1‑94 (MQ=60)
ACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCG < SRR4302542.1421533/94‑1 (MQ=60)
ACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCG > SRR4302542.7351144/1‑94 (MQ=60)
CCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGG < SRR4302542.1651958/94‑1 (MQ=60)
AGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCC > SRR4302542.5396093/1‑94 (MQ=60)
AGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCC > SRR4302542.7553387/1‑94 (MQ=60)
GCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCC > SRR4302542.2264959/1‑94 (MQ=60)
GCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCC < SRR4302542.6936651/94‑1 (MQ=60)
GCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCA > SRR4302542.6400285/1‑94 (MQ=60)
CATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGGCAGCAATGCCGTTTTCAAGCGGCCCA > SRR4302542.1293827/1‑94 (MQ=60)
ATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCAC > SRR4302542.1536149/1‑94 (MQ=60)
TAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACA > SRR4302542.4857571/1‑94 (MQ=60)
AACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAG < SRR4302542.7492083/94‑1 (MQ=60)
AACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAG < SRR4302542.506884/94‑1 (MQ=60)
AACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAG > SRR4302542.6842141/1‑94 (MQ=60)
ACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGC > SRR4302542.3544828/1‑94 (MQ=60)
ACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGC > SRR4302542.324196/1‑94 (MQ=60)
CCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCC < SRR4302542.652277/94‑1 (MQ=60)
CCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCC > SRR4302542.2310931/1‑94 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCG < SRR4302542.5529080/94‑1 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCG < SRR4302542.5826374/94‑1 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCG > SRR4302542.7075957/1‑94 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCG > SRR4302542.102294/1‑94 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGA > SRR4302542.4126557/1‑94 (MQ=60)
CAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGA < SRR4302542.5282369/94‑1 (MQ=60)
TGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGT < SRR4302542.5681593/94‑1 (MQ=60)
TGGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGT < SRR4302542.3212071/94‑1 (MQ=60)
GGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTC < SRR4302542.1840223/94‑1 (MQ=60)
GGCGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTC < SRR4302542.709719/94‑1 (MQ=60)
GGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAATGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCG < SRR4302542.6288948/94‑1 (MQ=60)
GGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCG < SRR4302542.3281918/94‑1 (MQ=60)
GCGTACAGGAATCCGTTCGGGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTC < SRR4302542.948589/94‑1 (MQ=60)
CGTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGT > SRR4302542.243942/1‑94 (MQ=60)
GTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTC > SRR4302542.3918661/1‑94 (MQ=60)
GTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTC > SRR4302542.417499/1‑94 (MQ=60)
GTACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTC > SRR4302542.833412/1‑94 (MQ=60)
TACAGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCG < SRR4302542.6475592/94‑1 (MQ=60)
AGGAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAA > SRR4302542.3362665/1‑94 (MQ=60)
GAATCCGTTCGGGAACAACAGCCCCCCCCCCACAACTGGC‑GGGGCAAAGGTCAGAAATGCCGTTTTCAAGCGGCCCACAGCCGAGCCGTCGAAA > SRR4302542.2977620/1‑94 (MQ=60)
GAATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACC > SRR4302542.4291226/1‑94 (MQ=60)
ATCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAA > SRR4302542.692633/1‑94 (MQ=60)
TCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAA < SRR4302542.5173983/94‑1 (MQ=60)
TCCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAA < SRR4302542.5696274/94‑1 (MQ=60)
CCGTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAAC < SRR4302542.1450916/94‑1 (MQ=60)
CGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAG < SRR4302542.5547745/94‑1 (MQ=60)
GTTCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAG < SRR4302542.5580018/94‑1 (MQ=60)
GTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGA < SRR4302542.2176459/94‑1 (MQ=60)
GTTCGGGAACAACAG‑‑‑‑CCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGAT > SRR4302542.5138864/1‑94 (MQ=60)
TCGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGAT < SRR4302542.5293358/94‑1 (MQ=60)
CGGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATC < SRR4302542.2896610/94‑1 (MQ=60)
GGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCT > SRR4302542.2113728/1‑94 (MQ=60)
GGGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCT > SRR4302542.5833946/1‑94 (MQ=60)
GGAACAACAGCC‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCT < SRR4302542.5292533/94‑1 (MQ=60)
GGAACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTG > SRR4302542.5040586/1‑94 (MQ=60)
AACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCC < SRR4302542.7400288/94‑1 (MQ=60)
AACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCC < SRR4302542.6335855/94‑1 (MQ=60)
AACAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCC > SRR4302542.5748854/1‑94 (MQ=60)
AACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCA < SRR4302542.6648558/94‑1 (MQ=60)
ACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAG < SRR4302542.951725/94‑1 (MQ=60)
CAACAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAG > SRR4302542.3388785/1‑94 (MQ=60)
AACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGAT > SRR4302542.6621278/1‑94 (MQ=60)
CAGC‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATA > SRR4302542.20579/1‑94 (MQ=60)
C‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTC > SRR4302542.3841099/1‑94 (MQ=60)
C‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTC > SRR4302542.906523/1‑94 (MQ=60)
C‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTC < SRR4302542.1575805/94‑1 (MQ=60)
agcCCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAG < SRR4302542.5453043/91‑1 (MQ=60)
agcCCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAG > SRR4302542.3654286/4‑94 (MQ=60)
agcCCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAG > SRR4302542.4569392/4‑94 (MQ=60)
CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCA > SRR4302542.3993304/1‑94 (MQ=60)
CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCA < SRR4302542.2258778/94‑1 (MQ=60)
CCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAA > SRR4302542.4151108/1‑94 (MQ=60)
CCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAA > SRR4302542.6354691/1‑94 (MQ=60)
CCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAA > SRR4302542.4641277/1‑94 (MQ=60)
CCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAA > SRR4302542.430400/1‑94 (MQ=60)
CCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAAC < SRR4302542.5535382/94‑1 (MQ=60)
CCCACAACCGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACA < SRR4302542.7462543/94‑1 (MQ=60)
CCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAA < SRR4302542.5527092/94‑1 (MQ=60)
CCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAA > SRR4302542.5862235/1‑94 (MQ=60)
CACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAGCAAA > SRR4302542.6847055/1‑94 (MQ=60)
CACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > SRR4302542.3055180/1‑94 (MQ=60)
CACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > SRR4302542.3458582/1‑94 (MQ=60)
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TAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑‑CCCCCCCACAACTGGC‑GGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAA > NC_000913/3302361‑3302547
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
