Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,334,367 |
G→A |
S31S (AGC→AGT) |
yrbA ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,334,367 | 0 | G | A | 83.1%
| 928.4
/ 133.4
| 360 | S31S (AGC→AGT) | yrbA | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (33/28); new base A (149/150); total (182/178) |
| Fisher's exact test for biased strand distribution p-value = 5.76e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.57e-01 |
Only 100 of 362 total aligned reads displayed.
ATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCAT > NC_000913/3334275‑3334459
|
atatatTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTgg < 1:1210696/93‑1 (MQ=255)
atatTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACt > 2:543860/1‑93 (MQ=255)
ttCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGcc < 2:5299452/93‑1 (MQ=255)
tCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCa > 2:1162972/1‑93 (MQ=255)
ccATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCAt > 1:2979535/1‑93 (MQ=255)
cATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATc > 2:6675815/1‑93 (MQ=255)
tCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGc > 2:1754878/1‑93 (MQ=255)
tCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGc < 1:2172111/93‑1 (MQ=255)
aGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCg > 2:6697227/1‑93 (MQ=255)
aGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCAACGCCg > 2:4836508/1‑93 (MQ=255)
gCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCgg > 1:4089737/1‑93 (MQ=255)
gACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCGCGGCAATAACCTGAAAGTGACTGCCATCGCCGGaaa < 1:5825918/93‑1 (MQ=255)
gACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGaaa < 1:1080264/93‑1 (MQ=255)
ccATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACg > 2:1482032/1‑93 (MQ=255)
cATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGt > 1:1015485/1‑93 (MQ=255)
cATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGt > 1:6262080/1‑93 (MQ=255)
aGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGa < 2:3946213/93‑1 (MQ=255)
gACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGAc > 1:3926005/1‑93 (MQ=255)
gACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGAc < 1:3217261/93‑1 (MQ=255)
aCCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACt < 2:2302409/93‑1 (MQ=255)
ccGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACtt > 2:2693541/1‑93 (MQ=255)
ccGTCTGCTGTTTTTTAACCCGACCCATGCCGTCAACCAACCCACCCCCGGCAAAACCCTGAAAGGGACTGCCCTCGCCGGAAACGTGGACtt < 1:3628970/93‑1 (MQ=255)
cGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCTGAAACGTGGACTTc < 2:5182297/93‑1 (MQ=255)
cGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTc < 1:4231260/93‑1 (MQ=255)
gTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTcc > 1:1810636/1‑93 (MQ=255)
gTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTcc < 1:5240381/93‑1 (MQ=255)
tCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCt > 1:3078593/1‑93 (MQ=255)
ctgctgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTg < 1:6337347/93‑1 (MQ=255)
tgctgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTgg > 2:7047307/1‑93 (MQ=255)
ctgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggag > 1:3315614/1‑93 (MQ=255)
ctgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggag < 2:444925/93‑1 (MQ=255)
ctgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggag > 1:7165067/1‑93 (MQ=255)
tgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTggagg < 2:4037255/93‑1 (MQ=255)
tgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggagg < 2:6300263/93‑1 (MQ=255)
tgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggagg > 2:7379652/1‑93 (MQ=255)
tgTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggagg < 2:5046891/93‑1 (MQ=255)
gTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggaggg > 2:5663737/1‑93 (MQ=255)
ttttttAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggaggga < 2:4956636/93‑1 (MQ=255)
tttttAACCCGACTCATGCCGTCAAACAACTCACCCCCGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTggagggag > 1:2518107/1‑93 (MQ=255)
ttttAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGgaga < 2:652713/93‑1 (MQ=255)
ttAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGgagaga < 1:2767904/93‑1 (MQ=255)
tAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGagagag < 1:4367136/93‑1 (MQ=255)
aaCCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGc > 2:155189/1‑93 (MQ=255)
aCCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCg < 2:3647196/93‑1 (MQ=255)
aCCCGACTCATGCCGTCAAACAACTCACCCACAGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCg > 2:1048731/1‑93 (MQ=255)
cccGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGt < 2:4712052/93‑1 (MQ=255)
cccGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGt < 2:6051613/93‑1 (MQ=255)
cccGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGt > 1:2841612/1‑93 (MQ=255)
cccGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGt > 2:7073831/1‑93 (MQ=255)
cccGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGt < 2:2590127/93‑1 (MQ=255)
ccGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGtt > 1:7059648/1‑93 (MQ=255)
cGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTtc < 1:2650560/93‑1 (MQ=255)
cGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTtc < 2:3412484/93‑1 (MQ=255)
gACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTtca > 2:1842054/1‑93 (MQ=255)
cTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTtcatc < 2:794208/93‑1 (MQ=255)
cTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTtcatc > 2:7155711/1‑93 (MQ=255)
cTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTtcatc < 1:2319452/93‑1 (MQ=255)
tCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTtcatca > 1:5453718/1‑93 (MQ=255)
tCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTtcatca > 2:2891224/1‑93 (MQ=255)
cATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCaa < 2:5361607/93‑1 (MQ=255)
cATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCaa < 2:5986527/93‑1 (MQ=255)
cATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCaa < 2:1332532/93‑1 (MQ=255)
cATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCaa < 2:2095415/93‑1 (MQ=255)
ccGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACg < 2:6603365/93‑1 (MQ=255)
cGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGc > 1:138962/1‑93 (MQ=255)
cGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGc < 1:1274704/93‑1 (MQ=255)
cGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGc < 2:3457093/93‑1 (MQ=255)
cGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGc < 1:987282/93‑1 (MQ=255)
cGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGc < 1:3701022/93‑1 (MQ=255)
gTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGct > 2:4582564/1‑93 (MQ=255)
cAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGctct < 1:198411/93‑1 (MQ=255)
acaacTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGaa < 2:5812082/93‑1 (MQ=255)
acaacTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGaa > 1:6903906/1‑93 (MQ=255)
caacTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAAt < 1:4585932/93‑1 (MQ=255)
cTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTc < 1:6047505/93‑1 (MQ=255)
cTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTc > 2:2509508/1‑93 (MQ=255)
tCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCa < 1:4878929/93‑1 (MQ=255)
tCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTTGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCa < 2:296573/93‑1 (MQ=255)
tCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCa > 2:1780509/1‑93 (MQ=255)
cACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCat < 2:1136829/93‑1 (MQ=255)
cccACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCatta > 1:475800/1‑93 (MQ=255)
cccACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCatta < 1:563992/93‑1 (MQ=255)
ccACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCattat < 2:2249923/93‑1 (MQ=255)
aCGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTAttt > 1:1641127/1‑93 (MQ=255)
aCGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTAttt > 1:1547262/1‑93 (MQ=255)
gCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTcc < 2:2006697/93‑1 (MQ=255)
cAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCa < 2:4398191/93‑1 (MQ=255)
cAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCCACACGCTCTGAATTTCATTATTTTCCa < 2:6417576/93‑1 (MQ=255)
aTAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATg < 1:6696669/93‑1 (MQ=255)
aTAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATg > 1:4918813/1‑93 (MQ=255)
aTAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATg < 2:2390031/93‑1 (MQ=255)
tAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATgg < 2:3282060/93‑1 (MQ=255)
aaCCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATggg > 1:7529195/1‑93 (MQ=255)
aaCCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATggg < 1:4471930/93‑1 (MQ=255)
aaCCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATggg < 2:7472272/93‑1 (MQ=255)
cTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATc < 1:4839157/93‑1 (MQ=255)
cTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATc < 1:644653/93‑1 (MQ=255)
tGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCt > 2:3841220/1‑93 (MQ=255)
tGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCt < 2:3144854/93‑1 (MQ=255)
tGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAatc > 1:6518897/1‑93 (MQ=255)
|
ATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCAT > NC_000913/3334275‑3334459
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCATC > NC_000913/3334275‑3334460
|
ATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGC < SRR4302542.1221091/94‑1 (MQ=60)
ATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGAC > SRR4302542.7513272/1‑94 (MQ=60)
ATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTG > SRR4302542.4879251/1‑94 (MQ=60)
ATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTG > SRR4302542.1155588/1‑94 (MQ=60)
ATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCC > SRR4302542.2782121/1‑94 (MQ=60)
ATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCC > SRR4302542.5021109/1‑94 (MQ=60)
TTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCA < SRR4302542.4167398/94‑1 (MQ=60)
TCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCAT > SRR4302542.3008066/1‑94 (MQ=60)
TCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCAT < SRR4302542.5023556/94‑1 (MQ=60)
TCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCAT > SRR4302542.5894351/1‑94 (MQ=60)
CCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATC > SRR4302542.1427568/1‑94 (MQ=60)
CATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCG < SRR4302542.5340916/94‑1 (MQ=60)
ATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGC > SRR4302542.3265358/1‑94 (MQ=60)
ATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGC > SRR4302542.3300640/1‑94 (MQ=60)
ATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGC > SRR4302542.6411113/1‑94 (MQ=60)
TCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCC < SRR4302542.2190809/94‑1 (MQ=60)
CAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCNN > SRR4302542.3264669/1‑94 (MQ=60)
CAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCG > SRR4302542.1154404/1‑94 (MQ=60)
AGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGG > SRR4302542.4130076/1‑94 (MQ=60)
GCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGA > SRR4302542.1002455/1‑94 (MQ=60)
GGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAA > SRR4302542.684390/1‑94 (MQ=60)
GGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAA > SRR4302542.7157518/1‑94 (MQ=60)
GGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAA > SRR4302542.7124073/1‑94 (MQ=60)
GGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAA > SRR4302542.1253090/1‑94 (MQ=60)
GGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAA > SRR4302542.4480326/1‑94 (MQ=60)
GACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCGCGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAAC < SRR4302542.5882469/94‑1 (MQ=60)
GACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAAC < SRR4302542.1089538/94‑1 (MQ=60)
ACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTTGCTGCCATCGCCGGAAACG > SRR4302542.4849069/1‑94 (MQ=60)
ACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACG > SRR4302542.1308323/1‑94 (MQ=60)
CCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGT > SRR4302542.1024232/1‑94 (MQ=60)
CCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGT > SRR4302542.6166757/1‑94 (MQ=60)
CCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGT > SRR4302542.6166756/1‑94 (MQ=60)
CCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGT > SRR4302542.6323784/1‑94 (MQ=60)
CATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTG > SRR4302542.6387026/1‑94 (MQ=60)
CATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTG > SRR4302542.1226261/1‑94 (MQ=60)
ATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGG > SRR4302542.3885530/1‑94 (MQ=60)
ATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGG > SRR4302542.4890824/1‑94 (MQ=60)
TAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGA < SRR4302542.3732270/94‑1 (MQ=60)
AGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGAC > SRR4302542.3964742/1‑94 (MQ=60)
AGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGAC < SRR4302542.1770112/94‑1 (MQ=60)
GGCCGTCTCCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAAACAGAAAGTGACTGCCACCGCCGGAAACGTGGACT < SRR4302542.396362/94‑1 (MQ=60)
GACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACT > SRR4302542.3535587/1‑94 (MQ=60)
GACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACT < SRR4302542.3247714/94‑1 (MQ=60)
CCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTC > SRR4302542.3942282/1‑94 (MQ=60)
CCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGCCAATAACCTGAAAGTGACTGCCATCCCCGGAAACGTGGACTTC > SRR4302542.5436061/1‑94 (MQ=60)
CCGTCTGCTGTTTTTTAACCCGACCCATGCCGTCAACCAACCCACCCCCGGCAAAACCCTGAAAGGGACTGCCCTCGCCGGAAACGTGGACTTC < SRR4302542.3662782/94‑1 (MQ=53)
CGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCC < SRR4302542.4272936/94‑1 (MQ=60)
CGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCC > SRR4302542.1826327/1‑94 (MQ=60)
CGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCC < SRR4302542.1956024/94‑1 (MQ=60)
GTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACTACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCT > SRR4302542.2706372/1‑94 (MQ=60)
GTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCT < SRR4302542.5260173/94‑1 (MQ=60)
GTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCT < SRR4302542.3196775/94‑1 (MQ=60)
GTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCT > SRR4302542.3107920/1‑94 (MQ=60)
GTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCT < SRR4302542.739113/94‑1 (MQ=60)
GTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCT < SRR4302542.6905855/94‑1 (MQ=60)
GTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCT < SRR4302542.5291330/94‑1 (MQ=60)
CTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGG < SRR4302542.1376809/94‑1 (MQ=60)
CTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGG > SRR4302542.3681244/1‑94 (MQ=60)
CTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGG < SRR4302542.6399782/94‑1 (MQ=60)
CTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGG < SRR4302542.64764/94‑1 (MQ=60)
CTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGG < SRR4302542.2168130/94‑1 (MQ=60)
CTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGAGACTGCCATCGCCGGAAACGCGGACTTCCTGG > SRR4302542.2947116/1‑94 (MQ=60)
TGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGA > SRR4302542.4934756/1‑94 (MQ=60)
TGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGA > SRR4302542.4934757/1‑94 (MQ=60)
GCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAG < SRR4302542.1117944/94‑1 (MQ=60)
GCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAG > SRR4302542.7235353/1‑94 (MQ=60)
GCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAG > SRR4302542.3346860/1‑94 (MQ=60)
GCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAG > SRR4302542.2843665/1‑94 (MQ=60)
CTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGG > SRR4302542.4425343/1‑94 (MQ=60)
TGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGG < SRR4302542.5510155/94‑1 (MQ=60)
GTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGA < SRR4302542.5534758/94‑1 (MQ=60)
TTTTTTAACCCGGCTCATGCCGTCAAACAACTCACCCAAGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAG < SRR4302542.3108086/94‑1 (MQ=60)
TTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCCCGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAG > SRR4302542.2542533/1‑94 (MQ=60)
TTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGA < SRR4302542.4457593/94‑1 (MQ=60)
TTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAG < SRR4302542.4233090/94‑1 (MQ=60)
TTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAG < SRR4302542.2518550/94‑1 (MQ=60)
TTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGA > SRR4302542.6749695/1‑94 (MQ=60)
TTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAG < SRR4302542.2794572/94‑1 (MQ=60)
TTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAG > SRR4302542.1055155/1‑94 (MQ=60)
TAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGC < SRR4302542.4410006/94‑1 (MQ=60)
AACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCG > SRR4302542.6999617/1‑94 (MQ=60)
AACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCG > SRR4302542.5551083/1‑94 (MQ=60)
ACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGT > SRR4302542.2868911/1‑94 (MQ=60)
CCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTT > SRR4302542.7128938/1‑94 (MQ=60)
CCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTT < SRR4302542.4351976/94‑1 (MQ=60)
CCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTC > SRR4302542.2072315/1‑94 (MQ=60)
CCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTC < SRR4302542.4073545/94‑1 (MQ=60)
CGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCA > SRR4302542.6457156/1‑94 (MQ=60)
CGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCA < SRR4302542.2676159/94‑1 (MQ=60)
CGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCA > SRR4302542.273278/1‑94 (MQ=60)
CGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCA > SRR4302542.92686/1‑94 (MQ=60)
GACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCAT < SRR4302542.129516/94‑1 (MQ=60)
ACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATC < SRR4302542.6525308/94‑1 (MQ=60)
CTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCA < SRR4302542.2339342/94‑1 (MQ=60)
CTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCA < SRR4302542.7395544/94‑1 (MQ=60)
CTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCA > SRR4302542.5506699/1‑94 (MQ=60)
CTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCA < SRR4302542.4742579/94‑1 (MQ=60)
CATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAAC < SRR4302542.7135325/94‑1 (MQ=60)
ATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACA < SRR4302542.573305/94‑1 (MQ=60)
TGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACAC < SRR4302542.6889794/94‑1 (MQ=60)
TGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACAC > SRR4302542.2901526/1‑94 (MQ=60)
TGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACAC < SRR4302542.6976172/94‑1 (MQ=60)
GCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACG < SRR4302542.4176218/94‑1 (MQ=60)
GCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACG < SRR4302542.307703/94‑1 (MQ=60)
GCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACG < SRR4302542.370813/94‑1 (MQ=60)
CCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGC > SRR4302542.140125/1‑94 (MQ=60)
CCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGC > SRR4302542.2799921/1‑94 (MQ=60)
CCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGC < SRR4302542.151078/94‑1 (MQ=60)
CGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCT < SRR4302542.995790/94‑1 (MQ=60)
CGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCT < SRR4302542.3737646/94‑1 (MQ=60)
CGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCT < SRR4302542.1285651/94‑1 (MQ=60)
GTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTC > SRR4302542.2315549/1‑94 (MQ=60)
GTCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTC > SRR4302542.2315550/1‑94 (MQ=60)
TCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCT < SRR4302542.7594080/94‑1 (MQ=60)
TCAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCT < SRR4302542.2550858/94‑1 (MQ=60)
CAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTG < SRR4302542.4946524/94‑1 (MQ=60)
CAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTG > SRR4302542.478701/1‑94 (MQ=60)
CAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTG < SRR4302542.200097/94‑1 (MQ=60)
CAAACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTG < SRR4302542.1722423/94‑1 (MQ=60)
AACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAA > SRR4302542.435031/1‑94 (MQ=60)
AACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAA > SRR4302542.6971688/1‑94 (MQ=60)
ACAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAAT < SRR4302542.6660562/94‑1 (MQ=60)
CAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATT < SRR4302542.4630790/94‑1 (MQ=60)
CAACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATT < SRR4302542.6536973/94‑1 (MQ=60)
ACTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTC < SRR4302542.6350112/94‑1 (MQ=60)
CTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCA > SRR4302542.3441106/1‑94 (MQ=60)
CTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCA < SRR4302542.45592/94‑1 (MQ=60)
CTCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCA < SRR4302542.6106040/94‑1 (MQ=60)
TCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCAT < SRR4302542.3890262/94‑1 (MQ=60)
TCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCAT < SRR4302542.4926412/94‑1 (MQ=60)
TCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCAT < SRR4302542.1587049/94‑1 (MQ=60)
TCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCAT < SRR4302542.6540890/94‑1 (MQ=60)
TCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCAT < SRR4302542.4905637/94‑1 (MQ=60)
TCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCAT > SRR4302542.25079/1‑94 (MQ=60)
TCACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCAT < SRR4302542.1037651/94‑1 (MQ=60)
CACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATT < SRR4302542.1968057/94‑1 (MQ=60)
ACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTA > SRR4302542.479918/1‑94 (MQ=60)
ACCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTA < SRR4302542.6015147/94‑1 (MQ=60)
CCCACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTAT < SRR4302542.568847/94‑1 (MQ=60)
CACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTT > SRR4302542.1560620/1‑94 (MQ=60)
CACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTT < SRR4302542.1571472/94‑1 (MQ=60)
CACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTT > SRR4302542.1655312/1‑94 (MQ=60)
CACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTT > SRR4302542.5755151/1‑94 (MQ=60)
ACGGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTT > SRR4302542.2609958/1‑94 (MQ=60)
CGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTC < SRR4302542.2558258/94‑1 (MQ=60)
GGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCC > SRR4302542.152950/1‑94 (MQ=60)
GGCAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCC < SRR4302542.2311359/94‑1 (MQ=60)
CAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCAT < SRR4302542.2891752/94‑1 (MQ=60)
CAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCAT < SRR4302542.3010962/94‑1 (MQ=60)
CAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCAT > SRR4302542.999992/1‑94 (MQ=60)
CAATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCAT < SRR4302542.4596307/94‑1 (MQ=60)
AATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATG > SRR4302542.4966642/1‑94 (MQ=60)
ATAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGG < SRR4302542.6762662/94‑1 (MQ=60)
TAACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGG > SRR4302542.7603213/1‑94 (MQ=60)
AACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGA < SRR4302542.6190996/94‑1 (MQ=60)
AACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGA > SRR4302542.2170829/1‑94 (MQ=60)
AACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGA < SRR4302542.4515790/94‑1 (MQ=60)
ACCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGAT < SRR4302542.4837890/94‑1 (MQ=60)
CCTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATC > SRR4302542.870097/1‑94 (MQ=60)
CTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCT < SRR4302542.650193/94‑1 (MQ=60)
CTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCT < SRR4302542.1774967/94‑1 (MQ=60)
CTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCT < SRR4302542.4886294/94‑1 (MQ=60)
CTGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCT < SRR4302542.456772/94‑1 (MQ=60)
TGAAAGTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTT > SRR4302542.5694875/1‑94 (MQ=60)
AGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAAT > SRR4302542.3158963/1‑94 (MQ=60)
GTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATC > SRR4302542.6583138/1‑94 (MQ=60)
GTGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATC > SRR4302542.5995697/1‑94 (MQ=60)
TGACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCA > SRR4302542.3422215/1‑94 (MQ=60)
GACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCAT < SRR4302542.1880264/94‑1 (MQ=60)
ACTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCATC > SRR4302542.2872936/1‑94 (MQ=60)
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ATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGGAAACGTGGACTTCCTGGAGGGAGAGAGCGTTCATCAACACGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCATC > NC_000913/3334275‑3334460
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
