Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,440,503 |
A→G |
V411A (GTC→GCC) |
prlA ← |
putative ATPase subunit of translocase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,440,503 | 0 | A | G | 87.6%
| 756.2
/ 91.2
| 298 | V411A (GTC→GCC) | prlA | putative ATPase subunit of translocase |
| Reads supporting (aligned to +/- strand): ref base A (19/18); new base G (118/143); total (137/161) |
| Fisher's exact test for biased strand distribution p-value = 4.88e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 |
Only 100 of 317 total aligned reads displayed.
GTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATA > NC_000913/3440412‑3440595
|
tAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGgca > 2:5762576/1‑93 (MQ=255)
gCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGgcaac < 2:4020292/93‑1 (MQ=255)
gCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGacaac > 2:2272152/1‑93 (MQ=255)
cTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGcaacaa > 2:719111/1‑93 (MQ=255)
tttCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCaacaac > 1:1269020/1‑93 (MQ=255)
tCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGa < 1:712238/93‑1 (MQ=255)
tCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGa < 2:5194702/93‑1 (MQ=255)
aGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATa > 1:827728/1‑93 (MQ=255)
aGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATa < 1:4156455/93‑1 (MQ=255)
aGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATa > 2:6195419/1‑93 (MQ=255)
aGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATa > 2:812038/1‑93 (MQ=255)
ggTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATaa > 1:4294989/1‑93 (MQ=255)
ggTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATaa < 1:658824/93‑1 (MQ=255)
ttCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGc > 1:6819416/1‑93 (MQ=255)
ttCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGc > 2:6250320/1‑93 (MQ=255)
ttCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGc < 2:779443/93‑1 (MQ=255)
tCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCa > 2:2410433/1‑93 (MQ=255)
gCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGt < 2:4985900/93‑1 (MQ=255)
cttcttCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGa > 2:3254026/1‑93 (MQ=255)
ttcttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAg > 1:3500043/1‑93 (MQ=255)
ttcttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAg < 2:2314211/93‑1 (MQ=255)
ttcttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAg > 1:2094902/1‑93 (MQ=255)
ttcttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAg < 2:1007294/93‑1 (MQ=255)
tcttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAgg < 2:7426545/93‑1 (MQ=255)
cttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGt < 1:144227/93‑1 (MQ=255)
ttcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTc > 2:5833566/1‑93 (MQ=255)
tcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTcc > 2:609775/1‑93 (MQ=255)
tcAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTcc > 1:2212578/1‑93 (MQ=255)
aaTGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCa > 1:1026033/1‑93 (MQ=255)
aaTGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCa < 1:738508/93‑1 (MQ=255)
aaTGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCa > 1:6308481/1‑93 (MQ=255)
aTGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCAc > 2:462843/1‑93 (MQ=255)
aTGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCAc > 1:2496742/1‑93 (MQ=255)
tGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCAcc > 2:1631349/1‑93 (MQ=255)
tGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCAcc < 1:5002565/93‑1 (MQ=255)
tGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCAcc > 2:6588735/1‑93 (MQ=255)
aGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGaa > 2:4354353/1‑93 (MQ=255)
aGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGaa > 2:7475199/1‑93 (MQ=255)
tCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAg < 1:3910200/93‑1 (MQ=255)
aTACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGaa < 1:4488446/93‑1 (MQ=255)
aTACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGaa < 1:2311400/93‑1 (MQ=255)
actgactgGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACg > 1:4392104/1‑93 (MQ=255)
actgactgGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACg < 2:2255794/93‑1 (MQ=255)
actgactgGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACg < 2:6941303/93‑1 (MQ=255)
ctgactgGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACgg < 2:5556839/93‑1 (MQ=255)
tgactgGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGt < 2:6639239/93‑1 (MQ=255)
gactgGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTa < 2:4210830/93‑1 (MQ=255)
ctgGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACt < 2:1468492/93‑1 (MQ=255)
catcatCAGAGGTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCAt < 1:3961996/93‑1 (MQ=255)
atcatcAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCAtt < 2:872874/93‑1 (MQ=255)
atcatcAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCAtt > 2:1353201/1‑93 (MQ=255)
atcatcAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCAtt < 1:3098316/93‑1 (MQ=255)
tcatcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTg > 2:5375247/1‑93 (MQ=255)
tcatcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTg < 1:2008070/93‑1 (MQ=255)
catcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGc < 1:4250979/93‑1 (MQ=255)
catcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGc < 1:5818378/93‑1 (MQ=255)
atcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCa < 1:2675448/93‑1 (MQ=255)
tcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCAt > 1:1356/1‑93 (MQ=255)
tcaGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCAt > 1:4010771/1‑93 (MQ=255)
caGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATc < 2:4788618/93‑1 (MQ=255)
agagTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCa > 1:2060894/1‑93 (MQ=255)
gagTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCAc > 1:5748880/1‑93 (MQ=255)
gagTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCAc < 2:593993/93‑1 (MQ=255)
agTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACg > 1:5162637/1‑93 (MQ=255)
tttGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCa < 2:1518275/93‑1 (MQ=255)
gCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGa < 1:7038975/93‑1 (MQ=255)
cACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTTATTGCATCACGCATGaa < 2:198549/93‑1 (MQ=255)
cTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACt > 1:5923653/1‑93 (MQ=255)
cTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACt < 1:2639465/93‑1 (MQ=255)
ttGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTc > 1:5237290/1‑93 (MQ=255)
gAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCg < 2:1776113/93‑1 (MQ=255)
ccATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGa < 2:1142331/93‑1 (MQ=255)
cATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGAt > 1:3730750/1‑93 (MQ=255)
cATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGAt < 1:2941734/93‑1 (MQ=255)
aTAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATc > 1:4963758/1‑93 (MQ=255)
aTAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATc > 2:1815077/1‑93 (MQ=255)
tAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCa < 1:5553745/93‑1 (MQ=255)
tAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCa > 2:3806346/1‑93 (MQ=255)
tAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCa < 1:615975/93‑1 (MQ=255)
aaaGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAg < 1:4907271/93‑1 (MQ=255)
aaGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAgg > 2:651736/1‑93 (MQ=255)
aaGTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAgg < 2:4539157/93‑1 (MQ=255)
gTCCATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCa > 1:4537644/1‑93 (MQ=255)
ccATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGa < 2:4129040/93‑1 (MQ=255)
ccATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGa < 1:7073998/93‑1 (MQ=255)
ccATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGa < 2:724560/93‑1 (MQ=255)
ccATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGa > 1:6052828/1‑93 (MQ=255)
cATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGAt > 2:2990262/1‑93 (MQ=255)
cATAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGAt > 2:2847399/1‑93 (MQ=255)
aTAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATa < 1:3638198/93‑1 (MQ=255)
tAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATaa > 2:6317312/1‑93 (MQ=255)
tAATCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATaa > 2:360166/1‑93 (MQ=255)
aaTCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATaaa < 2:3231887/93‑1 (MQ=255)
aaTCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATaaa < 2:3449881/93‑1 (MQ=255)
aTCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAg > 1:1674904/1‑93 (MQ=255)
tCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAgg > 2:2621614/1‑93 (MQ=255)
tCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAgg < 2:1684543/93‑1 (MQ=255)
tCACGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAgg < 1:1580998/93‑1 (MQ=255)
tCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAgg < 1:3148006/93‑1 (MQ=255)
aCGGCAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTa < 1:3269436/93‑1 (MQ=255)
|
GTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGTCCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATA > NC_000913/3440412‑3440595
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATAT > NC_000913/3440410‑3440596
|
CCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGG > SRR4302542.4986590/1‑94 (MQ=60)
CGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGC < SRR4302542.1188680/94‑1 (MQ=60)
GTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCA > SRR4302542.851974/1‑94 (MQ=60)
GTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACA < SRR4302542.6769990/94‑1 (MQ=60)
TAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAA > SRR4302542.7598140/1‑94 (MQ=60)
AGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAAC < SRR4302542.2766691/94‑1 (MQ=60)
AGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAAC > SRR4302542.4987142/1‑94 (MQ=60)
AGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAAC > SRR4302542.2255444/1‑94 (MQ=60)
GCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACA < SRR4302542.3958456/94‑1 (MQ=60)
CCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAA > SRR4302542.2865055/1‑94 (MQ=60)
CTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAAC > SRR4302542.1279926/1‑94 (MQ=60)
CTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAAC > SRR4302542.5040702/1‑94 (MQ=60)
CTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAAC < SRR4302542.5921519/94‑1 (MQ=60)
CTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAAC > SRR4302542.3227371/1‑94 (MQ=60)
TTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACG > SRR4302542.5385789/1‑94 (MQ=60)
TTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGA > SRR4302542.5025816/1‑94 (MQ=60)
TCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGAT < SRR4302542.718383/94‑1 (MQ=60)
CAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATA > SRR4302542.834881/1‑94 (MQ=60)
AGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAA < SRR4302542.4197374/94‑1 (MQ=60)
AGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAA > SRR4302542.4337235/1‑94 (MQ=60)
GGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAG > SRR4302542.7502849/1‑94 (MQ=60)
GGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAG < SRR4302542.1410949/94‑1 (MQ=60)
GGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAG < SRR4302542.664507/94‑1 (MQ=60)
GGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAG < SRR4302542.4517642/94‑1 (MQ=60)
GGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAG > SRR4302542.801005/1‑94 (MQ=60)
GTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGC < SRR4302542.4567346/94‑1 (MQ=60)
GTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGC < SRR4302542.4232849/94‑1 (MQ=60)
GTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGC > SRR4302542.6886449/1‑94 (MQ=60)
GTTCGCCTTCTTCAATGCAGACTCATACTGACAGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGC > SRR4302542.4535495/1‑94 (MQ=60)
TTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCA < SRR4302542.2356671/94‑1 (MQ=60)
CGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGT > SRR4302542.3228664/1‑94 (MQ=60)
CGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGT < SRR4302542.4314029/94‑1 (MQ=60)
GCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTG > SRR4302542.3123544/1‑94 (MQ=60)
GCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTG > SRR4302542.5782109/1‑94 (MQ=60)
CCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGA < SRR4302542.2037459/94‑1 (MQ=60)
CCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGA < SRR4302542.315392/94‑1 (MQ=60)
CCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGA > SRR4302542.6520705/1‑94 (MQ=60)
CTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAG < SRR4302542.4025420/94‑1 (MQ=60)
CTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAG > SRR4302542.3532779/1‑94 (MQ=60)
CTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAG > SRR4302542.1757917/1‑94 (MQ=60)
CTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAG > SRR4302542.2112976/1‑94 (MQ=60)
TTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGG > SRR4302542.4317135/1‑94 (MQ=60)
TTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGG < SRR4302542.4231369/94‑1 (MQ=60)
TTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGG < SRR4302542.6368378/94‑1 (MQ=60)
TCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT < SRR4302542.7222000/94‑1 (MQ=60)
CTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑C < SRR4302542.145432/94‑1 (MQ=60)
CTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑C < SRR4302542.6926647/94‑1 (MQ=60)
TTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CC > SRR4302542.1293892/1‑94 (MQ=60)
TTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CC > SRR4302542.2231619/1‑94 (MQ=60)
CAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCA > SRR4302542.3824884/1‑94 (MQ=60)
CAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCA > SRR4302542.6370633/1‑94 (MQ=60)
CAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCA > SRR4302542.1034875/1‑94 (MQ=60)
AATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCAC < SRR4302542.744915/94‑1 (MQ=60)
AATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCAC > SRR4302542.2520957/1‑94 (MQ=60)
ATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACC < SRR4302542.2700720/94‑1 (MQ=60)
TGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCG < SRR4302542.5051158/94‑1 (MQ=60)
GCAGGCTCATACTGACTGGACATCATCAGAGTTTGCACTTGAACCATAAAGTCCATAAACACGGCAACAACGATAAGCAGTGAGGTCCCCACCG < SRR4302542.3694206/94‑1 (MQ=60)
AGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAG < SRR4302542.3059574/94‑1 (MQ=60)
AGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAG < SRR4302542.6392352/94‑1 (MQ=60)
AGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAG < SRR4302542.4082179/94‑1 (MQ=60)
ACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTA > SRR4302542.2260282/1‑94 (MQ=60)
CTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAG > SRR4302542.252324/1‑94 (MQ=60)
CTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAG < SRR4302542.2054274/94‑1 (MQ=60)
CTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGAT‑CCCACCGAAGTAG < SRR4302542.1574199/94‑1 (MQ=60)
TCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGA < SRR4302542.3948791/94‑1 (MQ=60)
TCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGA < SRR4302542.5270492/94‑1 (MQ=60)
TCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGA > SRR4302542.566514/1‑94 (MQ=60)
CATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAA > SRR4302542.5772387/1‑94 (MQ=60)
ATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAAC < SRR4302542.4532493/94‑1 (MQ=60)
ATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAAC < SRR4302542.2331248/94‑1 (MQ=60)
TACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACG > SRR4302542.4435195/1‑94 (MQ=60)
TACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACG < SRR4302542.1415405/94‑1 (MQ=60)
ACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGG > SRR4302542.5197148/1‑94 (MQ=60)
GACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTAC < SRR4302542.5846615/94‑1 (MQ=60)
GACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTAC > SRR4302542.4171054/1‑94 (MQ=60)
GACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTAC < SRR4302542.1229025/94‑1 (MQ=60)
GGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTC > SRR4302542.7133260/1‑94 (MQ=60)
GGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTC > SRR4302542.4740060/1‑94 (MQ=60)
GGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTC > SRR4302542.3418784/1‑94 (MQ=60)
ACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCAT > SRR4302542.637721/1‑94 (MQ=60)
ACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCAT < SRR4302542.4816986/94‑1 (MQ=60)
CATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATT < SRR4302542.222967/94‑1 (MQ=60)
CATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATT > SRR4302542.2632348/1‑94 (MQ=60)
CATCATCAGAGGTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATT < SRR4302542.4001117/94‑1 (MQ=60)
ATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTG > SRR4302542.4755511/1‑94 (MQ=60)
ATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTG < SRR4302542.3127767/94‑1 (MQ=60)
TCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGC < SRR4302542.2025415/94‑1 (MQ=60)
CATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCA < SRR4302542.5106153/94‑1 (MQ=60)
CATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCA < SRR4302542.5874871/94‑1 (MQ=60)
CATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCA < SRR4302542.4292857/94‑1 (MQ=60)
ATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCAT < SRR4302542.2701273/94‑1 (MQ=60)
ATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCAT > SRR4302542.4050311/1‑94 (MQ=60)
ATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCAT > SRR4302542.189500/1‑94 (MQ=60)
ATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCAT > SRR4302542.1364/1‑94 (MQ=60)
TCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATC < SRR4302542.5436125/94‑1 (MQ=60)
TCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATC < SRR4302542.2112918/94‑1 (MQ=60)
CAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCA < SRR4302542.5995071/94‑1 (MQ=60)
CAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCA > SRR4302542.7137785/1‑94 (MQ=60)
CAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCA > SRR4302542.2078707/1‑94 (MQ=60)
CAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCA < SRR4302542.5850118/94‑1 (MQ=60)
AGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCAC > SRR4302542.1145833/1‑94 (MQ=60)
AGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCAC > SRR4302542.5804683/1‑94 (MQ=60)
AGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCAC < SRR4302542.6935215/94‑1 (MQ=60)
GAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACG < SRR4302542.4353059/94‑1 (MQ=60)
GAGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACG > SRR4302542.5212810/1‑94 (MQ=60)
GAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACG > SRR4302542.4062831/1‑94 (MQ=60)
AGTTTGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGC > SRR4302542.6190905/1‑94 (MQ=60)
TTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCAT < SRR4302542.1797897/94‑1 (MQ=60)
TTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCAT < SRR4302542.4343617/94‑1 (MQ=60)
TGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGA > SRR4302542.3993210/1‑94 (MQ=60)
TGCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGA > SRR4302542.7154745/1‑94 (MQ=60)
TGCACTTGAGCCATAAAGTCCAAAATCACGGCAACAACGTTAAGAAGGGAGGC‑CCCCCCGAAGAAGAACGGAATTTCCATTGCTTCACGCATGA > SRR4302542.7151206/1‑94 (MQ=23)
GCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAA < SRR4302542.2550827/94‑1 (MQ=60)
GCACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAA < SRR4302542.7108109/94‑1 (MQ=60)
ACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACT > SRR4302542.362508/1‑94 (MQ=60)
ACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACT > SRR4302542.3548510/1‑94 (MQ=60)
ACTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACT > SRR4302542.5981049/1‑94 (MQ=60)
CTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTC < SRR4302542.2664958/94‑1 (MQ=60)
CTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTC > SRR4302542.3405988/1‑94 (MQ=60)
CTTGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTC < SRR4302542.1599736/94‑1 (MQ=60)
CTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTC > SRR4302542.5288206/1‑94 (MQ=60)
TGAGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCG < SRR4302542.2346382/94‑1 (MQ=60)
AGCCATAAAGTCCATAATCACGGCAACAGCGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGG < SRR4302542.375908/94‑1 (MQ=60)
AGCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGG < SRR4302542.611216/94‑1 (MQ=60)
GCCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGA > SRR4302542.4994710/1‑94 (MQ=60)
CCATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGAT > SRR4302542.3767699/1‑94 (MQ=60)
CATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATC > SRR4302542.5011969/1‑94 (MQ=60)
CATAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATC < SRR4302542.2969905/94‑1 (MQ=60)
TAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAG < SRR4302542.5607707/94‑1 (MQ=60)
TAAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAG < SRR4302542.621267/94‑1 (MQ=60)
AAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGG < SRR4302542.4955000/94‑1 (MQ=60)
AAAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGG < SRR4302542.5237431/94‑1 (MQ=60)
AAGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGC > SRR4302542.3341085/1‑94 (MQ=60)
AGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCA < SRR4302542.3156742/94‑1 (MQ=60)
AGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCA < SRR4302542.6299399/94‑1 (MQ=60)
AGTCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCA > SRR4302542.4582076/1‑94 (MQ=60)
GTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAG < SRR4302542.6860344/94‑1 (MQ=60)
TCCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGA > SRR4302542.1659287/1‑94 (MQ=60)
TCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGA > SRR4302542.6111409/1‑94 (MQ=60)
CCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGAT < SRR4302542.4048732/94‑1 (MQ=60)
CCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGAT < SRR4302542.7143424/94‑1 (MQ=60)
CCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGAT > SRR4302542.7354698/1‑94 (MQ=60)
CCATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGAT < SRR4302542.2126019/94‑1 (MQ=60)
CATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATA < SRR4302542.2096357/94‑1 (MQ=60)
ATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAA > SRR4302542.1548588/1‑94 (MQ=60)
ATAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAA < SRR4302542.3672122/94‑1 (MQ=60)
TAATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCATATAAA > SRR4302542.2674096/1‑94 (MQ=60)
AATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAG > SRR4302542.1689375/1‑94 (MQ=60)
AATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAG < SRR4302542.3910464/94‑1 (MQ=60)
ATCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGG < SRR4302542.5938766/94‑1 (MQ=60)
TCACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGT < SRR4302542.1594646/94‑1 (MQ=60)
TCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGT < SRR4302542.3177904/94‑1 (MQ=60)
ACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAA < SRR4302542.1346773/94‑1 (MQ=60)
ACGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAA < SRR4302542.3300296/94‑1 (MQ=60)
ACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAA < SRR4302542.4475677/94‑1 (MQ=60)
CGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAAT > SRR4302542.3799899/1‑94 (MQ=60)
CGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAAT > SRR4302542.3952779/1‑94 (MQ=60)
CGGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAAT < SRR4302542.1125579/94‑1 (MQ=60)
GGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATA < SRR4302542.6489995/94‑1 (MQ=60)
GGCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATA < SRR4302542.3958413/94‑1 (MQ=60)
GCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATAT < SRR4302542.4485687/94‑1 (MQ=60)
GCAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATAT < SRR4302542.4049339/94‑1 (MQ=60)
ACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATAT < SRR4302542.6095795/94‑1 (MQ=60)
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CCGTAGCCTTTCAGGTTCGCCTTCTTCAATGCAGACTCATACTGACTGGACATCATCAGAGTTTGCACTTGAGCCATAAAGTCCATAATCACGACAACAACGATAAGCAGTGAGGT‑CCCACCGAAGTAGAACGGTACTTTCATTGCATCACGCATGAACTCCGGGATCAGGCAGATAAAGGTAATAT > NC_000913/3440410‑3440596
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
