Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,446,406 G→A T134M (ACG→ATG)  rplP ← 50S ribosomal subunit protein L16

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,446,4060GA86.7% 931.7 / 89.7 323T134M (ACG→ATG) rplP50S ribosomal subunit protein L16
Reads supporting (aligned to +/- strand):  ref base G (16/27);  new base A (118/161);  total (135/188)
Fisher's exact test for biased strand distribution p-value = 6.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.75e-02

Only 100 of 323 total aligned reads displayed.

GTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTT  >  NC_000913/3446316‑3446496
                                                                                          |                                                                                          
gTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATc                                                                                          <  2:2600397/93‑1 (MQ=255)
gTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATc                                                                                          <  2:1746678/93‑1 (MQ=255)
gTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATc                                                                                          >  1:4259256/1‑93 (MQ=255)
 ttGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCt                                                                                         >  2:4713423/1‑93 (MQ=255)
 ttGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCt                                                                                         <  2:2854673/93‑1 (MQ=255)
 ttGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCt                                                                                         >  2:4029587/1‑93 (MQ=255)
  tGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCtt                                                                                        <  2:5126354/93‑1 (MQ=255)
   gAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTa                                                                                       >  2:3419341/1‑93 (MQ=255)
   gAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTa                                                                                       <  1:7473548/93‑1 (MQ=255)
   gAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTa                                                                                       <  1:3549355/93‑1 (MQ=255)
   gAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTa                                                                                       <  2:1329761/93‑1 (MQ=255)
   gAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTa                                                                                       <  2:6736931/93‑1 (MQ=255)
    aaCTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAg                                                                                      <  2:532622/93‑1 (MQ=255)
     aCTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGt                                                                                     <  1:4822409/93‑1 (MQ=255)
     aCTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGt                                                                                     <  1:3387750/93‑1 (MQ=255)
      cTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGtt                                                                                    >  2:1260643/1‑93 (MQ=255)
       tGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTa                                                                                   <  2:5793951/93‑1 (MQ=255)
       tGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTa                                                                                   >  1:4473081/1‑93 (MQ=255)
          tCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACaa                                                                                >  1:6097982/1‑93 (MQ=255)
           cACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACaaa                                                                               <  2:4377782/93‑1 (MQ=255)
           cACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACaaa                                                                               <  2:3109592/93‑1 (MQ=255)
           cACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACaaa                                                                               <  1:4793785/93‑1 (MQ=255)
             cGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAgg                                                                             <  1:1936074/93‑1 (MQ=255)
              gcagcaGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAggt                                                                            <  1:598347/93‑1 (MQ=255)
              gcagcaGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAggt                                                                            >  2:2461636/1‑93 (MQ=255)
               cagcagGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAggtg                                                                           <  2:1676438/93‑1 (MQ=255)
               cagcagGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAggtg                                                                           <  1:2417789/93‑1 (MQ=255)
               cagcagGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAggtg                                                                           <  1:1711944/93‑1 (MQ=255)
                 gcagGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAggtggt                                                                         <  2:5837333/93‑1 (MQ=255)
                   agGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCCTCTTAGTTACAAAGGTGGttt                                                                       >  1:2220074/1‑93 (MQ=255)
                    ggTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGtttt                                                                      >  2:5065835/1‑93 (MQ=255)
                    ggTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGtttt                                                                      <  1:1281989/93‑1 (MQ=255)
                    ggTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGtttt                                                                      >  2:2724947/1‑93 (MQ=255)
                     gTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTa                                                                     <  1:5402754/93‑1 (MQ=255)
                      ttCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTaa                                                                    <  2:5241399/93‑1 (MQ=255)
                      ttCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTaa                                                                    <  1:1664221/93‑1 (MQ=255)
                      ttCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTaa                                                                    <  1:833789/93‑1 (MQ=255)
                       tCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAAt                                                                   <  1:6702096/93‑1 (MQ=255)
                         agcagcTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCg                                                                 >  2:2956629/1‑93 (MQ=255)
                             gcTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAg                                                             <  1:1046531/93‑1 (MQ=255)
                             gcTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAg                                                             >  2:431650/1‑93 (MQ=255)
                               tCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGtt                                                           <  2:1819752/93‑1 (MQ=255)
                               tCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGtt                                                           >  2:29109/1‑93 (MQ=255)
                                cGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGttt                                                          <  2:5517243/93‑1 (MQ=255)
                                cGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGttt                                                          <  1:307046/93‑1 (MQ=255)
                                 ggTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTc                                                         <  1:230051/93‑1 (MQ=255)
                                 ggTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTc                                                         <  2:6206266/93‑1 (MQ=255)
                                  gtgtTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCg                                                        >  1:3974902/1‑93 (MQ=255)
                                   tgtTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCgc                                                       <  2:3867254/93‑1 (MQ=255)
                                    gtTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCgct                                                      <  2:1398941/93‑1 (MQ=255)
                                      tCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCgctgc                                                    <  1:1197687/93‑1 (MQ=255)
                                      tCAGCTCTTCAACGCTCTTCTCAAGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCgctgc                                                    <  2:6974481/93‑1 (MQ=255)
                                         gCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCtgctgc                                                 >  2:19937/1‑93 (MQ=255)
                                           tctTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCa                                               >  1:7204694/1‑93 (MQ=255)
                                           tctTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCa                                               <  1:1848837/93‑1 (MQ=255)
                                            ctTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAg                                              >  1:6503548/1‑93 (MQ=255)
                                              tCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCt                                            >  1:4530737/1‑93 (MQ=255)
                                               cAACGCTCTTCTCACGCAGCTCTTTTACTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCtt                                           <  2:3530794/93‑1 (MQ=255)
                                                aaCGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTg                                          <  2:7350374/93‑1 (MQ=255)
                                                  cGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGaa                                        <  1:4972813/93‑1 (MQ=255)
                                                    ctctTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATg                                      >  2:7467754/1‑93 (MQ=255)
                                                       ttctCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCtt                                   >  1:7288238/1‑93 (MQ=255)
                                                        tctcACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTc                                  <  1:6342681/93‑1 (MQ=255)
                                                         ctcACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCa                                 <  1:5218349/93‑1 (MQ=255)
                                                          tcACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCAc                                >  2:1090777/1‑93 (MQ=255)
                                                           cACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACg                               >  2:913564/1‑93 (MQ=255)
                                                            aCGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACgg                              >  1:3865499/1‑93 (MQ=255)
                                                              gCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGc                            >  2:4433247/1‑93 (MQ=255)
                                                              gCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGc                            >  1:4336573/1‑93 (MQ=255)
                                                              gCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGc                            <  2:393179/93‑1 (MQ=255)
                                                               cAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGcc                           >  2:4157079/1‑93 (MQ=255)
                                                                 gCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAg                         >  1:5093626/1‑93 (MQ=255)
                                                                  ctctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGc                        >  1:3715725/1‑93 (MQ=255)
                                                                  ctctTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGc                        >  1:580414/1‑93 (MQ=255)
                                                                  ctctTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGc                        <  1:465375/93‑1 (MQ=255)
                                                                   tctTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGct                       >  2:6043028/1‑93 (MQ=255)
                                                                    ctTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGctc                      >  2:2392406/1‑93 (MQ=255)
                                                                    ctTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGctc                      >  1:913838/1‑93 (MQ=255)
                                                                     ttttGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTCCACGGGCCAGctct                     <  2:6440967/93‑1 (MQ=255)
                                                                      tttGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGctggc                    >  2:368290/1‑90 (MQ=255)
                                                                      tttGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCtt                    <  1:7005753/93‑1 (MQ=255)
                                                                      tttGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCtt                    >  1:5460758/1‑93 (MQ=255)
                                                                       ttGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTc                   <  1:5632537/93‑1 (MQ=255)
                                                                       ttGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTc                   <  2:2200128/93‑1 (MQ=255)
                                                                       ttGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTc                   <  1:1462330/93‑1 (MQ=255)
                                                                        tGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTcc                  <  2:1602922/93‑1 (MQ=255)
                                                                        tGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTcc                  <  1:2838597/93‑1 (MQ=255)
                                                                        tGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTcc                  <  2:4903433/93‑1 (MQ=255)
                                                                         gCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCCTGAATGCTTCACGGGCCAGCTCTTCCg                 <  1:149732/93‑1 (MQ=255)
                                                                          cTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCgg                >  1:5729426/1‑93 (MQ=255)
                                                                               aTTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAacac           <  2:4117792/93‑1 (MQ=255)
                                                                               aTTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAacac           <  2:3182559/93‑1 (MQ=255)
                                                                                ttACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACAcc          <  1:5288509/93‑1 (MQ=255)
                                                                                  aCATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGt        >  1:6571121/1‑93 (MQ=255)
                                                                                    aTCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTcc      >  2:2440458/1‑93 (MQ=255)
                                                                                      cACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCAt    >  1:3176252/1‑93 (MQ=255)
                                                                                       aCCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCAtt   >  2:3034273/1‑93 (MQ=255)
                                                                                       aCCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCAtt   <  1:2695005/93‑1 (MQ=255)
                                                                                       aCCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCAtt   >  1:1809348/1‑93 (MQ=255)
                                                                                        ccGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCAttt  <  1:7157075/93‑1 (MQ=255)
                                                                                          |                                                                                          
GTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTT  >  NC_000913/3446316‑3446496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGGTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  >  NC_000913/3446313‑3446499
                                                                                             |                                                                                             
CAGGTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCA                                                                                               <  SRR4302542.3233347/94‑1 (MQ=60)
CAGGTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCA                                                                                               >  SRR4302542.6481967/1‑94 (MQ=60)
 AGGTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCAT                                                                                              >  SRR4302542.5346305/1‑94 (MQ=60)
 AGGTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCAT                                                                                              >  SRR4302542.6808806/1‑94 (MQ=60)
 AGGTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCAT                                                                                              >  SRR4302542.7325295/1‑94 (MQ=60)
  GGTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATC                                                                                             >  SRR4302542.4301196/1‑94 (MQ=60)
   GTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCT                                                                                            >  SRR4302542.4526158/1‑94 (MQ=60)
    TTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTT                                                                                           <  SRR4302542.4658179/94‑1 (MQ=60)
    TTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTT                                                                                           <  SRR4302542.2280078/94‑1 (MQ=60)
    TTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTT                                                                                           >  SRR4302542.1819973/1‑94 (MQ=60)
     TGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTA                                                                                          <  SRR4302542.4607292/94‑1 (MQ=60)
      GAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAG                                                                                         <  SRR4302542.6607906/94‑1 (MQ=60)
      GAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAG                                                                                         <  SRR4302542.3582537/94‑1 (MQ=60)
      GAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAG                                                                                         <  SRR4302542.7546780/94‑1 (MQ=60)
      GAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAG                                                                                         <  SRR4302542.2092315/94‑1 (MQ=60)
       AACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGT                                                                                        >  SRR4302542.1922723/1‑94 (MQ=60)
        ACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTT                                                                                       <  SRR4302542.3576395/94‑1 (MQ=60)
        ACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTT                                                                                       <  SRR4302542.2753465/94‑1 (MQ=60)
        ACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTT                                                                                       <  SRR4302542.3419546/94‑1 (MQ=60)
        ACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTT                                                                                       <  SRR4302542.4869408/94‑1 (MQ=60)
         CTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTA                                                                                      >  SRR4302542.4516953/1‑94 (MQ=60)
          TGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTAC                                                                                     <  SRR4302542.172165/94‑1 (MQ=60)
          TGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTAC                                                                                     >  SRR4302542.4365396/1‑94 (MQ=60)
           GCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACA                                                                                    >  SRR4302542.5207380/1‑94 (MQ=60)
            CTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAA                                                                                   >  SRR4302542.6156999/1‑94 (MQ=60)
            CTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAA                                                                                   <  SRR4302542.7151901/94‑1 (MQ=60)
              CACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAG                                                                                 <  SRR4302542.4840490/94‑1 (MQ=60)
              CACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAG                                                                                 <  SRR4302542.3997526/94‑1 (MQ=60)
                CGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGT                                                                               >  SRR4302542.6610762/1‑94 (MQ=60)
                CGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGT                                                                               <  SRR4302542.1952788/94‑1 (MQ=60)
                CGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGT                                                                               <  SRR4302542.2669445/94‑1 (MQ=60)
                 GCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTG                                                                              <  SRR4302542.603504/94‑1 (MQ=60)
                 GCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTG                                                                              >  SRR4302542.524654/1‑94 (MQ=60)
                 GCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTG                                                                              <  SRR4302542.3461288/94‑1 (MQ=60)
                  CAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGG                                                                             >  SRR4302542.5319363/1‑94 (MQ=60)
                  CAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGG                                                                             <  SRR4302542.1726817/94‑1 (MQ=60)
                  CAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGG                                                                             <  SRR4302542.2441293/94‑1 (MQ=60)
                  CAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGG                                                                             <  SRR4302542.5712485/94‑1 (MQ=60)
                   AGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGT                                                                            <  SRR4302542.842189/94‑1 (MQ=60)
                   AGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGT                                                                            >  SRR4302542.2258144/1‑94 (MQ=60)
                    GCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTT                                                                           <  SRR4302542.6410147/94‑1 (MQ=60)
                     CAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCCTCTTAGTTACAAAGGTGGTTT                                                                          >  SRR4302542.2239170/1‑94 (MQ=60)
                     CAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTT                                                                          >  SRR4302542.3544684/1‑94 (MQ=60)
                     CAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTT                                                                          <  SRR4302542.6841020/94‑1 (MQ=60)
                     CAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTT                                                                          <  SRR4302542.1929535/94‑1 (MQ=60)
                       GGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTA                                                                        <  SRR4302542.991962/94‑1 (MQ=60)
                       GGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTA                                                                        <  SRR4302542.1293025/94‑1 (MQ=60)
                        GTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAA                                                                       >  SRR4302542.4866318/1‑94 (MQ=60)
                        GTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAA                                                                       <  SRR4302542.5455241/94‑1 (MQ=60)
                         TTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAAT                                                                      >  SRR4302542.1734292/1‑94 (MQ=60)
                         TTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAAT                                                                      <  SRR4302542.840994/94‑1 (MQ=60)
                         TTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAAT                                                                      <  SRR4302542.1678598/94‑1 (MQ=60)
                         TTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAAT                                                                      <  SRR4302542.7271157/94‑1 (MQ=60)
                          TCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATC                                                                     <  SRR4302542.6768131/94‑1 (MQ=60)
                          TCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATC                                                                     >  SRR4302542.3857016/1‑94 (MQ=60)
                          TCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATC                                                                     <  SRR4302542.7491991/94‑1 (MQ=60)
                          TCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATC                                                                     <  SRR4302542.4753194/94‑1 (MQ=60)
                           CAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCG                                                                    <  SRR4302542.3702126/94‑1 (MQ=60)
                           CAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCG                                                                    <  SRR4302542.6959613/94‑1 (MQ=60)
                           CAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCG                                                                    <  SRR4302542.1254947/94‑1 (MQ=60)
                            AGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGG                                                                   >  SRR4302542.4094966/1‑94 (MQ=60)
                              CAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCA                                                                 <  SRR4302542.6317139/94‑1 (MQ=60)
                              CAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCA                                                                 >  SRR4302542.752969/1‑94 (MQ=60)
                              CAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCA                                                                 <  SRR4302542.1615765/94‑1 (MQ=60)
                               AGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAG                                                                >  SRR4302542.1897724/1‑94 (MQ=60)
                               AGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAG                                                                >  SRR4302542.855786/1‑94 (MQ=60)
                               AGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAG                                                                <  SRR4302542.5139061/94‑1 (MQ=60)
                                GCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGT                                                               <  SRR4302542.1055510/94‑1 (MQ=60)
                                 CTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTT                                                              >  SRR4302542.7333279/1‑94 (MQ=60)
                                  TCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTT                                                             <  SRR4302542.6691222/94‑1 (MQ=60)
                                  TCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTT                                                             <  SRR4302542.3115052/94‑1 (MQ=60)
                                   CGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTC                                                            >  SRR4302542.5519058/1‑94 (MQ=60)
                                   CGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTC                                                            <  SRR4302542.729336/94‑1 (MQ=60)
                                   CGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTC                                                            >  SRR4302542.4809383/1‑94 (MQ=60)
                                   CGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTC                                                            <  SRR4302542.309723/94‑1 (MQ=60)
                                    GGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCG                                                           <  SRR4302542.4204496/94‑1 (MQ=60)
                                    GGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCG                                                           >  SRR4302542.4014126/1‑94 (MQ=60)
                                    GGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCG                                                           <  SRR4302542.232026/94‑1 (MQ=60)
                                    GGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCG                                                           <  SRR4302542.1199970/94‑1 (MQ=60)
                                      TGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCT                                                         <  SRR4302542.5482250/94‑1 (MQ=60)
                                      TGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCT                                                         <  SRR4302542.6561914/94‑1 (MQ=60)
                                       GTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTG                                                        >  SRR4302542.4385812/1‑94 (MQ=60)
                                        TTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGC                                                       <  SRR4302542.5999858/94‑1 (MQ=60)
                                         TCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCT                                                      <  SRR4302542.3253232/94‑1 (MQ=60)
                                         TCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCT                                                      <  SRR4302542.1207997/94‑1 (MQ=60)
                                           AGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGC                                                    <  SRR4302542.4306574/94‑1 (MQ=60)
                                            GCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCC                                                   >  SRR4302542.6382386/1‑94 (MQ=60)
                                             CTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCA                                                  >  SRR4302542.5579178/1‑94 (MQ=60)
                                             CTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCA                                                  >  SRR4302542.7275403/1‑94 (MQ=60)
                                              TCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAG                                                 <  SRR4302542.6156242/94‑1 (MQ=60)
                                              TCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAG                                                 <  SRR4302542.3105171/94‑1 (MQ=60)
                                              TCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAG                                                 <  SRR4302542.666303/94‑1 (MQ=60)
                                              TCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAG                                                 >  SRR4302542.6567658/1‑94 (MQ=60)
                                              TCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAG                                                 <  SRR4302542.1864831/94‑1 (MQ=60)
                                                TTCGACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCT                                               >  SRR4302542.265447/1‑94 (MQ=60)
                                                TTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCT                                               >  SRR4302542.4575116/1‑94 (MQ=60)
                                                   AACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGA                                            >  SRR4302542.1500710/1‑94 (MQ=60)
                                                    ACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAA                                           <  SRR4302542.1699552/94‑1 (MQ=60)
                                                     CGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAAT                                          <  SRR4302542.4811924/94‑1 (MQ=60)
                                                     CGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAAT                                          <  SRR4302542.5021090/94‑1 (MQ=60)
                                                      GCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATG                                         >  SRR4302542.1653986/1‑94 (MQ=60)
                                                       CTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGC                                        <  SRR4302542.5134241/94‑1 (MQ=60)
                                                       CTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGC                                        >  SRR4302542.1315007/1‑94 (MQ=60)
                                                        TCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCT                                       <  SRR4302542.1436682/94‑1 (MQ=60)
                                                         CTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTT                                      >  SRR4302542.4880325/1‑94 (MQ=60)
                                                         CTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTT                                      >  SRR4302542.7359686/1‑94 (MQ=60)
                                                          TTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTC                                     <  SRR4302542.6240360/94‑1 (MQ=60)
                                                          TTCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTC                                     <  SRR4302542.5382975/94‑1 (MQ=60)
                                                           TCTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCA                                    <  SRR4302542.6405169/94‑1 (MQ=60)
                                                            CTCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCAC                                   <  SRR4302542.5269094/94‑1 (MQ=60)
                                                             TCACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACG                                  <  SRR4302542.1551847/94‑1 (MQ=60)
                                                              CACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGG                                 <  SRR4302542.7123066/94‑1 (MQ=60)
                                                              CACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGG                                 >  SRR4302542.2042562/1‑94 (MQ=60)
                                                              CACGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGG                                 >  SRR4302542.3903705/1‑94 (MQ=60)
                                                                CGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGC                               <  SRR4302542.3667036/94‑1 (MQ=60)
                                                                CGCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGC                               >  SRR4302542.4379184/1‑94 (MQ=60)
                                                                 GCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCC                              <  SRR4302542.1845201/94‑1 (MQ=60)
                                                                 GCAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCC                              >  SRR4302542.5630039/1‑94 (MQ=60)
                                                                  CAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCA                             >  SRR4302542.5326603/1‑94 (MQ=60)
                                                                  CAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACCAAGGCGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCAAGGGCCA                             >  SRR4302542.5160553/1‑94 (MQ=60)
                                                                  CAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCA                             >  SRR4302542.7604299/1‑94 (MQ=60)
                                                                  CAGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCA                             >  SRR4302542.5016768/1‑94 (MQ=60)
                                                                   AGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAG                            >  SRR4302542.5143127/1‑94 (MQ=60)
                                                                   AGCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAG                            >  SRR4302542.1860708/1‑94 (MQ=60)
                                                                    GCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGC                           >  SRR4302542.3752485/1‑94 (MQ=60)
                                                                    GCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGC                           >  SRR4302542.1481414/1‑94 (MQ=60)
                                                                    GCTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGC                           >  SRR4302542.585434/1‑94 (MQ=60)
                                                                     CTCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCT                          <  SRR4302542.469404/94‑1 (MQ=60)
                                                                      TCTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTC                         >  SRR4302542.921718/1‑94 (MQ=60)
                                                                       CTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCT                        >  SRR4302542.4522689/1‑94 (MQ=60)
                                                                       CTTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCT                        <  SRR4302542.6906432/94‑1 (MQ=60)
                                                                        TTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTT                       >  SRR4302542.5513812/1‑94 (MQ=60)
                                                                        TTTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTT                       >  SRR4302542.4854253/1‑94 (MQ=60)
                                                                         TTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTC                      >  SRR4302542.7380937/1‑94 (MQ=60)
                                                                         TTTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTC                      <  SRR4302542.7074575/94‑1 (MQ=60)
                                                                          TTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCC                     <  SRR4302542.5687230/94‑1 (MQ=60)
                                                                          TTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCC                     <  SRR4302542.1474955/94‑1 (MQ=60)
                                                                          TTGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCC                     <  SRR4302542.1281823/94‑1 (MQ=60)
                                                                           TGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCG                    >  SRR4302542.3972615/1‑94 (MQ=60)
                                                                           TGCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCG                    <  SRR4302542.2865878/94‑1 (MQ=60)
                                                                            GCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGG                   <  SRR4302542.5810744/94‑1 (MQ=60)
                                                                            GCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGG                   >  SRR4302542.5785028/1‑94 (MQ=60)
                                                                            GCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGG                   <  SRR4302542.3023315/94‑1 (MQ=60)
                                                                            GCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGG                   >  SRR4302542.5503338/1‑94 (MQ=60)
                                                                            GCTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCCTGAATGCTTCACGGGCCAGCTCTTCCGG                   <  SRR4302542.150997/94‑1 (MQ=60)
                                                                             CTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGA                  >  SRR4302542.2862855/1‑94 (MQ=60)
                                                                             CTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGA                  <  SRR4302542.4403701/94‑1 (MQ=60)
                                                                             CTTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGA                  <  SRR4302542.5412166/94‑1 (MQ=60)
                                                                              TTTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAA                 >  SRR4302542.6150644/1‑94 (MQ=60)
                                                                               TTCATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAAC                <  SRR4302542.235793/94‑1 (MQ=60)
                                                                                 CATTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACAC              >  SRR4302542.5866824/1‑94 (MQ=60)
                                                                                  ATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACC             <  SRR4302542.2321469/94‑1 (MQ=60)
                                                                                   TTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCG            <  SRR4302542.106194/94‑1 (MQ=60)
                                                                                   TTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCG            <  SRR4302542.4238011/94‑1 (MQ=60)
                                                                                   TTACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCG            <  SRR4302542.5339916/94‑1 (MQ=60)
                                                                                    TACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGT           >  SRR4302542.6635876/1‑94 (MQ=60)
                                                                                    TACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGT           <  SRR4302542.832650/94‑1 (MQ=60)
                                                                                     ACATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTC          >  SRR4302542.375574/1‑94 (MQ=60)
                                                                                      CATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCC         <  SRR4302542.3325740/94‑1 (MQ=60)
                                                                                      CATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCC         >  SRR4302542.3077826/1‑94 (MQ=60)
                                                                                       ATCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCA        >  SRR4302542.5757228/1‑94 (MQ=60)
                                                                                        TCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCAT       >  SRR4302542.3206360/1‑94 (MQ=60)
                                                                                        TCACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCAT       <  SRR4302542.2770192/94‑1 (MQ=60)
                                                                                         CACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATT      >  SRR4302542.1825025/1‑94 (MQ=60)
                                                                                         CACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATT      <  SRR4302542.5811152/94‑1 (MQ=60)
                                                                                         CACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATT      <  SRR4302542.7252322/94‑1 (MQ=60)
                                                                                          ACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTT     >  SRR4302542.5745841/1‑94 (MQ=60)
                                                                                          ACCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTT     <  SRR4302542.2720993/94‑1 (MQ=60)
                                                                                           CCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTC    <  SRR4302542.7227289/94‑1 (MQ=60)
                                                                                           CCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTC    >  SRR4302542.6853318/1‑94 (MQ=60)
                                                                                           CCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTC    >  SRR4302542.6195022/1‑94 (MQ=60)
                                                                                           CCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTC    >  SRR4302542.4852542/1‑94 (MQ=60)
                                                                                           CCATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCGGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGGCCATTTC    >  SRR4302542.6853317/1‑94 (MQ=60)
                                                                                            CATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCA   <  SRR4302542.623220/94‑1 (MQ=60)
                                                                                            CATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCA   >  SRR4302542.2081868/1‑94 (MQ=60)
                                                                                            CATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCA   >  SRR4302542.2956286/1‑94 (MQ=60)
                                                                                            CATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCA   <  SRR4302542.5840827/94‑1 (MQ=60)
                                                                                             ATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  <  SRR4302542.279827/94‑1 (MQ=60)
                                                                                             ATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  >  SRR4302542.1586735/1‑94 (MQ=60)
                                                                                             ATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  >  SRR4302542.2148638/1‑94 (MQ=60)
                                                                                             ATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  <  SRR4302542.7465685/94‑1 (MQ=60)
                                                                                             ATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  >  SRR4302542.5526719/1‑94 (MQ=60)
                                                                                             ATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  <  SRR4302542.1482903/94‑1 (MQ=60)
                                                                                             ATCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  >  SRR4302542.66040/1‑94 (MQ=60)
                                                                                             |                                                                                             
CAGGTTGAACTGCTCACGCAGCAGGTTCAGCAGCTCGGTGTTCAGCTCTTCAACGCTCTTCTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCAT  >  NC_000913/3446313‑3446499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑