Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,629,781 A→G V147A (GTT→GCT)  yhiJ ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,629,7810AG87.8% 886.8 / 101.6 344V147A (GTT→GCT) yhiJhypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (19/23);  new base G (126/176);  total (145/199)
Fisher's exact test for biased strand distribution p-value = 7.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 349 total aligned reads displayed.

GGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCG  >  NC_000913/3629690‑3629870
                                                                                           |                                                                                         
 ggTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTgcagca                                                                                         >  1:512183/1‑93 (MQ=255)
   ttttATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGcatc                                                                                       >  1:4275039/1‑93 (MQ=255)
   ttttATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAAcatc                                                                                       >  2:711925/1‑93 (MQ=255)
     ttATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAAcatcat                                                                                     >  1:5806958/1‑93 (MQ=255)
      tATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCAtt                                                                                    <  1:2964531/93‑1 (MQ=255)
          aTTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCa                                                                                <  2:573117/93‑1 (MQ=255)
          aTTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCa                                                                                <  1:5984355/93‑1 (MQ=255)
           ttGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCAt                                                                               <  1:6394115/93‑1 (MQ=255)
             gTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTa                                                                             <  2:4725554/93‑1 (MQ=255)
             gTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTa                                                                             <  2:3315059/93‑1 (MQ=255)
             gTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTa                                                                             <  2:7310162/93‑1 (MQ=255)
             gTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTa                                                                             <  1:1766023/93‑1 (MQ=255)
                 cGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCAt                                                                         <  1:4308226/93‑1 (MQ=255)
                  gAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCAtt                                                                        <  1:7434786/93‑1 (MQ=255)
                    aTTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTa                                                                      <  1:5467560/93‑1 (MQ=255)
                    aTTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTa                                                                      >  2:3776304/1‑93 (MQ=255)
                    aTTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTa                                                                      >  2:233081/1‑93 (MQ=255)
                      ttAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACt                                                                    >  2:5035457/1‑93 (MQ=255)
                      ttAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACt                                                                    >  2:3134132/1‑93 (MQ=255)
                          tatCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCa                                                                <  1:5566942/93‑1 (MQ=255)
                            tCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCata                                                              >  1:1139924/1‑93 (MQ=255)
                            tCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCata                                                              <  1:3773297/93‑1 (MQ=255)
                            tCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCata                                                              <  2:1042406/93‑1 (MQ=255)
                            tCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCata                                                              <  1:4992939/93‑1 (MQ=255)
                            tCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCata                                                              >  1:84324/1‑93 (MQ=255)
                             cAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCatat                                                             <  2:6773301/93‑1 (MQ=255)
                              aGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCAtatt                                                            >  2:2225816/1‑93 (MQ=255)
                               gATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCAtatta                                                           <  1:1284715/93‑1 (MQ=255)
                                aTACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCAtattat                                                          >  1:5263292/1‑93 (MQ=255)
                                aTACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCAtattat                                                          <  2:5657121/93‑1 (MQ=255)
                                 tACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATattatt                                                         >  2:6277034/1‑93 (MQ=255)
                                 tACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATattatt                                                         <  1:6563274/93‑1 (MQ=255)
                                  aCATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATAttatta                                                        <  2:5305009/93‑1 (MQ=255)
                                    aTTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAg                                                      <  1:2537977/93‑1 (MQ=255)
                                     ttATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGt                                                     >  2:2092861/1‑93 (MQ=255)
                                      tataTTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGta                                                    <  1:1095046/93‑1 (MQ=255)
                                      tataTTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGta                                                    >  1:3186011/1‑93 (MQ=255)
                                       atatTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGtaa                                                   >  1:3894286/1‑93 (MQ=255)
                                        tatTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGtaaa                                                  >  1:7001775/1‑93 (MQ=255)
                                        tatTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGtaaa                                                  >  2:635215/1‑93 (MQ=255)
                                         atTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGtaaat                                                 >  2:1347783/1‑93 (MQ=255)
                                          ttGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGtaaata                                                <  1:3653503/93‑1 (MQ=255)
                                            gCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGtaaataaa                                              <  2:2618181/93‑1 (MQ=255)
                                            gCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGtaaataaa                                              <  2:4903555/93‑1 (MQ=255)
                                              gATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACa                                            >  2:685059/1‑93 (MQ=255)
                                              gATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACa                                            >  1:187886/1‑93 (MQ=255)
                                              gATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACa                                            >  1:4600619/1‑93 (MQ=255)
                                              gATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACa                                            >  1:2479877/1‑93 (MQ=255)
                                               atatTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACaa                                           >  1:6242840/1‑93 (MQ=255)
                                               atatTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACaa                                           >  1:5758762/1‑93 (MQ=255)
                                                tatTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACann                                          >  1:1643405/1‑91 (MQ=255)
                                                tatTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAAt                                          >  1:690357/1‑93 (MQ=255)
                                                tatTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAAt                                          <  1:1012034/93‑1 (MQ=255)
                                                 atTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATa                                         <  1:2043598/93‑1 (MQ=255)
                                                  ttttCCAGTTCCAGTTGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATAc                                        <  1:6280904/93‑1 (MQ=255)
                                                  ttttCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATAc                                        <  2:6928554/93‑1 (MQ=255)
                                                   tttCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACt                                       <  2:3914347/93‑1 (MQ=255)
                                                      ccagttccagATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCa                                    <  2:1460486/93‑1 (MQ=255)
                                                       nngttccagATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCAc                                   <  1:1330768/91‑1 (MQ=255)
                                                       cagttccagATGGGTTTGTGCGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCAc                                   >  2:642672/1‑93 (MQ=255)
                                                          ttccagATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCaa                                >  2:4075023/1‑93 (MQ=255)
                                                            ccagATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAAtt                              <  1:6820773/93‑1 (MQ=255)
                                                            ccagATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAAtt                              >  2:7033742/1‑93 (MQ=255)
                                                             cagATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTa                             >  1:138963/1‑93 (MQ=255)
                                                               gATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAat                           >  1:3981224/1‑93 (MQ=255)
                                                               gATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAat                           >  2:5188469/1‑93 (MQ=255)
                                                               gATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAat                           >  1:3247997/1‑93 (MQ=255)
                                                                aTGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAata                          <  2:5894564/93‑1 (MQ=255)
                                                                aTGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAata                          <  1:6089219/93‑1 (MQ=255)
                                                                aTGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAata                          <  1:2202557/93‑1 (MQ=255)
                                                                aTGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAata                          <  2:4132785/93‑1 (MQ=255)
                                                                 tGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAatat                         >  1:6948012/1‑93 (MQ=255)
                                                                 tGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAatat                         <  1:757644/93‑1 (MQ=255)
                                                                  gggTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATc                        <  2:2836784/93‑1 (MQ=255)
                                                                  gggTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATc                        <  2:7391038/93‑1 (MQ=255)
                                                                    gTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCgg                      <  2:3080633/93‑1 (MQ=255)
                                                                    gTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCgg                      <  1:7272387/93‑1 (MQ=255)
                                                                     tttGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGt                     <  1:7398709/93‑1 (MQ=255)
                                                                     tttGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGt                     >  2:2943296/1‑93 (MQ=255)
                                                                     tttGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGt                     <  2:5992451/93‑1 (MQ=255)
                                                                      ttGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGta                    <  1:6491761/93‑1 (MQ=255)
                                                                       tGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGtat                   <  1:2861860/93‑1 (MQ=255)
                                                                        gTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGtatt                  <  1:4173399/93‑1 (MQ=255)
                                                                         tACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGtatta                 <  2:1838600/93‑1 (MQ=255)
                                                                          aCGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGtattat                <  2:4548678/93‑1 (MQ=255)
                                                                           cGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATc               >  2:75500/1‑93 (MQ=255)
                                                                            gACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCa              >  2:1636005/1‑93 (MQ=255)
                                                                             aCTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCaa             <  2:6033370/93‑1 (MQ=255)
                                                                               tCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAaga           >  1:7353228/1‑93 (MQ=255)
                                                                               tCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAaga           >  2:1802941/1‑93 (MQ=255)
                                                                                cAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAagag          >  1:3537376/1‑93 (MQ=255)
                                                                                 aGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAagaga         >  2:799120/1‑93 (MQ=255)
                                                                                  gTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAagagag        >  1:2359032/1‑93 (MQ=255)
                                                                                  gTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAagagag        <  1:6648815/93‑1 (MQ=255)
                                                                                     aCTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCaa     >  2:7174320/1‑93 (MQ=255)
                                                                                     aCTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCaa     <  2:4174392/93‑1 (MQ=255)
                                                                                      cTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAAc    <  1:7120687/93‑1 (MQ=255)
                                                                                      cTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAAc    >  2:2406435/1‑93 (MQ=255)
                                                                                      cTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAAc    >  2:3606615/1‑93 (MQ=255)
                                                                                        gCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCg  <  1:2671296/93‑1 (MQ=255)
                                                                                           |                                                                                         
GGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCG  >  NC_000913/3629690‑3629870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGGGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAAT  >  NC_000913/3629688‑3629874
                                                                                             |                                                                                             
TGGGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAG                                                                                               <  SRR4302542.6685691/94‑1 (MQ=60)
 GGGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGC                                                                                              <  SRR4302542.3622472/94‑1 (MQ=60)
  GGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCA                                                                                             <  SRR4302542.5042369/94‑1 (MQ=60)
  GGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCA                                                                                             >  SRR4302542.516629/1‑94 (MQ=60)
  GGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCA                                                                                             >  SRR4302542.5918912/1‑94 (MQ=60)
    GTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATC                                                                                           >  SRR4302542.4317096/1‑94 (MQ=60)
    GTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATC                                                                                           <  SRR4302542.2954443/94‑1 (MQ=60)
    GTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATC                                                                                           >  SRR4302542.7084623/1‑94 (MQ=60)
    GTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATC                                                                                           >  SRR4302542.4738961/1‑94 (MQ=60)
    GTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATC                                                                                           <  SRR4302542.3972902/94‑1 (MQ=60)
     TTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCA                                                                                          <  SRR4302542.5297742/94‑1 (MQ=60)
     TTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCA                                                                                          <  SRR4302542.2535025/94‑1 (MQ=60)
      TTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCAT                                                                                         <  SRR4302542.4551266/94‑1 (MQ=60)
      TTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCAT                                                                                         <  SRR4302542.3633289/94‑1 (MQ=60)
      TTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCAT                                                                                         >  SRR4302542.5863309/1‑94 (MQ=60)
        TATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTA                                                                                       >  SRR4302542.2876801/1‑94 (MQ=60)
        TATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTA                                                                                       <  SRR4302542.2992937/94‑1 (MQ=60)
         ATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAG                                                                                      >  SRR4302542.6937715/1‑94 (MQ=60)
         ATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAG                                                                                      >  SRR4302542.6722483/1‑94 (MQ=60)
          TCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGC                                                                                     <  SRR4302542.6995427/94‑1 (MQ=60)
           CATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCA                                                                                    >  SRR4302542.2127949/1‑94 (MQ=60)
           CATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCA                                                                                    <  SRR4302542.5840623/94‑1 (MQ=60)
           CATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCA                                                                                    >  SRR4302542.1704034/1‑94 (MQ=60)
            ATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCAT                                                                                   <  SRR4302542.6042325/94‑1 (MQ=60)
            ATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCAT                                                                                   >  SRR4302542.6317138/1‑94 (MQ=60)
             TTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATT                                                                                  <  SRR4302542.6457104/94‑1 (MQ=60)
             TTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATT                                                                                  <  SRR4302542.5548705/94‑1 (MQ=60)
             TTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATT                                                                                  <  SRR4302542.5844906/94‑1 (MQ=60)
               GTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTAT                                                                                <  SRR4302542.1781338/94‑1 (MQ=60)
                TTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATC                                                                               >  SRR4302542.7491470/1‑94 (MQ=60)
                 TTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCA                                                                              <  SRR4302542.2268590/94‑1 (MQ=60)
                   CGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATT                                                                            >  SRR4302542.5984217/1‑94 (MQ=60)
                   CGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATT                                                                            <  SRR4302542.4350577/94‑1 (MQ=60)
                    GAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTT                                                                           <  SRR4302542.981280/94‑1 (MQ=60)
                    GAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTT                                                                           >  SRR4302542.53633/1‑94 (MQ=60)
                    GAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTT                                                                           <  SRR4302542.7507553/94‑1 (MQ=60)
                     AATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTA                                                                          >  SRR4302542.4376078/1‑94 (MQ=60)
                      ATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTAC                                                                         >  SRR4302542.1930546/1‑94 (MQ=60)
                      ATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTAC                                                                         >  SRR4302542.4215595/1‑94 (MQ=60)
                      ATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTAC                                                                         <  SRR4302542.5520670/94‑1 (MQ=60)
                      ATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTAC                                                                         <  SRR4302542.6793796/94‑1 (MQ=60)
                      ATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTAC                                                                         <  SRR4302542.827037/94‑1 (MQ=60)
                       TTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACT                                                                        <  SRR4302542.6419255/94‑1 (MQ=60)
                       TTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACT                                                                        <  SRR4302542.4603312/94‑1 (MQ=60)
                       TTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACT                                                                        <  SRR4302542.2462025/94‑1 (MQ=60)
                        TTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTG                                                                       <  SRR4302542.6339546/94‑1 (MQ=60)
                        TTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTG                                                                       <  SRR4302542.4295449/94‑1 (MQ=60)
                          AATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTC                                                                     >  SRR4302542.3811385/1‑94 (MQ=60)
                          AATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTC                                                                     >  SRR4302542.7469605/1‑94 (MQ=60)
                           ATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCA                                                                    >  SRR4302542.6613732/1‑94 (MQ=60)
                           ATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCA                                                                    >  SRR4302542.5326581/1‑94 (MQ=60)
                            TATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCAT                                                                   <  SRR4302542.5621028/94‑1 (MQ=60)
                             ATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATA                                                                  >  SRR4302542.1149684/1‑94 (MQ=60)
                             ATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATA                                                                  >  SRR4302542.85028/1‑94 (MQ=60)
                             ATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATA                                                                  <  SRR4302542.1790680/94‑1 (MQ=60)
                              TCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATAT                                                                 <  SRR4302542.4039123/94‑1 (MQ=60)
                              TCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATAT                                                                 <  SRR4302542.5624833/94‑1 (MQ=60)
                              TCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATAT                                                                 <  SRR4302542.3810617/94‑1 (MQ=60)
                              TCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATAT                                                                 <  SRR4302542.6674628/94‑1 (MQ=60)
                              TCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATAT                                                                 <  SRR4302542.5041440/94‑1 (MQ=60)
                               CAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTGCGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATT                                                                >  SRR4302542.2479139/1‑94 (MQ=60)
                               CAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATT                                                                <  SRR4302542.4175294/94‑1 (MQ=60)
                                AGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTA                                                               >  SRR4302542.5099349/1‑94 (MQ=60)
                                 GATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTAT                                                              >  SRR4302542.5314439/1‑94 (MQ=60)
                                 GATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTAT                                                              <  SRR4302542.1295780/94‑1 (MQ=60)
                                 GATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTAT                                                              <  SRR4302542.6681835/94‑1 (MQ=60)
                                 GATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTAT                                                              >  SRR4302542.6017221/1‑94 (MQ=60)
                                 GATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTAT                                                              <  SRR4302542.4332744/94‑1 (MQ=60)
                                  ATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTGCGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATT                                                             >  SRR4302542.858751/1‑94 (MQ=60)
                                  ATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATT                                                             >  SRR4302542.3935780/1‑94 (MQ=60)
                                   TACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTGCGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTA                                                            <  SRR4302542.5100797/94‑1 (MQ=60)
                                   TACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTA                                                            <  SRR4302542.2544600/94‑1 (MQ=60)
                                   TACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTA                                                            <  SRR4302542.6627959/94‑1 (MQ=60)
                                    ACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAA                                                           <  SRR4302542.1155913/94‑1 (MQ=60)
                                     CATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAG                                                          <  SRR4302542.3011921/94‑1 (MQ=60)
                                     CATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAG                                                          <  SRR4302542.6302971/94‑1 (MQ=60)
                                      ATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGT                                                         <  SRR4302542.701846/94‑1 (MQ=60)
                                      ATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGT                                                         <  SRR4302542.261753/94‑1 (MQ=60)
                                      ATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGT                                                         <  SRR4302542.2562586/94‑1 (MQ=60)
                                      ATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGT                                                         <  SRR4302542.6987037/94‑1 (MQ=60)
                                      ATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGT                                                         >  SRR4302542.3203872/1‑94 (MQ=60)
                                       TTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTA                                                        >  SRR4302542.3216191/1‑94 (MQ=60)
                                        TATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAA                                                       <  SRR4302542.2548591/94‑1 (MQ=60)
                                        TATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAA                                                       <  SRR4302542.2341778/94‑1 (MQ=60)
                                        TATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAA                                                       <  SRR4302542.1104426/94‑1 (MQ=60)
                                        TATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAA                                                       <  SRR4302542.1104427/94‑1 (MQ=60)
                                        TATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAA                                                       >  SRR4302542.6551955/1‑94 (MQ=60)
                                        TATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAA                                                       <  SRR4302542.2337715/94‑1 (MQ=60)
                                        TATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAA                                                       >  SRR4302542.3932737/1‑94 (MQ=60)
                                        TATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGAATCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAA                                                       >  SRR4302542.7353752/1‑94 (MQ=60)
                                         ATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAA                                                      >  SRR4302542.7070556/1‑94 (MQ=60)
                                          TATTGCGATATTTTCCAGTTCCAGATGGGTTTGTGCGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAAT                                                     <  SRR4302542.4678096/94‑1 (MQ=60)
                                          TATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAAT                                                     >  SRR4302542.6222535/1‑94 (MQ=60)
                                          TATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAAT                                                     <  SRR4302542.7141960/94‑1 (MQ=60)
                                          TATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAAT                                                     <  SRR4302542.1318997/94‑1 (MQ=60)
                                           ATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATA                                                    >  SRR4302542.2162245/1‑94 (MQ=60)
                                           ATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAACA                                                    <  SRR4302542.3104074/94‑1 (MQ=60)
                                            TTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAA                                                   <  SRR4302542.1746465/94‑1 (MQ=60)
                                            TTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAA                                                   <  SRR4302542.3687686/94‑1 (MQ=60)
                                             TGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAA                                                  >  SRR4302542.391306/1‑94 (MQ=60)
                                             TGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAA                                                  <  SRR4302542.3242880/94‑1 (MQ=60)
                                               CGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACA                                                <  SRR4302542.6493756/94‑1 (MQ=60)
                                               CGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACA                                                >  SRR4302542.1031657/1‑94 (MQ=60)
                                               CGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACA                                                >  SRR4302542.189476/1‑94 (MQ=60)
                                               CGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACA                                                >  SRR4302542.4645592/1‑94 (MQ=60)
                                               CGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACA                                                >  SRR4302542.2503925/1‑94 (MQ=60)
                                               CGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACA                                                >  SRR4302542.334655/1‑94 (MQ=60)
                                                GATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAA                                               <  SRR4302542.5164180/94‑1 (MQ=60)
                                                GATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAA                                               >  SRR4302542.6304344/1‑94 (MQ=60)
                                                GATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAA                                               >  SRR4302542.5814660/1‑94 (MQ=60)
                                                GATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAA                                               >  SRR4302542.2966988/1‑94 (MQ=60)
                                                 ATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACANN                                              >  SRR4302542.1657603/1‑94 (MQ=60)
                                                 ATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAAT                                              >  SRR4302542.696322/1‑94 (MQ=60)
                                                 ATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAAT                                              >  SRR4302542.696324/1‑94 (MQ=60)
                                                  TATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATA                                             <  SRR4302542.1020752/94‑1 (MQ=60)
                                                  TATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATA                                             <  SRR4302542.4320345/94‑1 (MQ=60)
                                                   ATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATAC                                            <  SRR4302542.2061267/94‑1 (MQ=60)
                                                    TTTTCCAGTTCCAGTTGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACT                                           <  SRR4302542.6342798/94‑1 (MQ=60)
                                                    TTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACT                                           >  SRR4302542.6566604/1‑94 (MQ=60)
                                                    TTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACT                                           <  SRR4302542.5620275/94‑1 (MQ=60)
                                                    TTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACT                                           <  SRR4302542.2573961/94‑1 (MQ=60)
                                                    TTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACT                                           <  SRR4302542.6915506/94‑1 (MQ=60)
                                                      TTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGC                                         <  SRR4302542.3319912/94‑1 (MQ=60)
                                                       TCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCA                                        <  SRR4302542.1155228/94‑1 (MQ=60)
                                                       TCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCA                                        <  SRR4302542.3740276/94‑1 (MQ=60)
                                                       TCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCA                                        >  SRR4302542.7593412/1‑94 (MQ=60)
                                                       TCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCA                                        <  SRR4302542.6164801/94‑1 (MQ=60)
                                                        CCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCAC                                       >  SRR4302542.1934513/1‑94 (MQ=60)
                                                        CCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCAC                                       <  SRR4302542.86901/94‑1 (MQ=60)
                                                        CCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCAC                                       <  SRR4302542.5721427/94‑1 (MQ=60)
                                                        CCAGTTCCAGATGGGTTTATACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCAC                                       >  SRR4302542.3764153/1‑94 (MQ=60)
                                                         NNGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACC                                      <  SRR4302542.1342227/94‑1 (MQ=60)
                                                          AGTTCCAGATGGGTTTGTGCGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCA                                     <  SRR4302542.7412656/94‑1 (MQ=60)
                                                          AGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCA                                     >  SRR4302542.7562375/1‑94 (MQ=60)
                                                           GTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATAaatgataat                                    <  SRR4302542.3149649/94‑10 (MQ=60)
                                                           GTTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAA                                    >  SRR4302542.370055/1‑94 (MQ=60)
                                                            TTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAAT                                   >  SRR4302542.7559113/1‑94 (MQ=60)
                                                            TTCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAAT                                   <  SRR4302542.701366/94‑1 (MQ=60)
                                                             TCCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATT                                  <  SRR4302542.1354341/94‑1 (MQ=60)
                                                              CCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTA                                 <  SRR4302542.6887818/94‑1 (MQ=60)
                                                              CCAGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTA                                 >  SRR4302542.140126/1‑94 (MQ=60)
                                                                AGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAAT                               >  SRR4302542.1146635/1‑94 (MQ=60)
                                                                AGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAAT                               >  SRR4302542.3278691/1‑94 (MQ=60)
                                                                AGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAAT                               <  SRR4302542.6345442/94‑1 (MQ=60)
                                                                AGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAAT                               >  SRR4302542.4020495/1‑94 (MQ=60)
                                                                AGATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAAT                               >  SRR4302542.1754963/1‑94 (MQ=60)
                                                                 GATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATA                              >  SRR4302542.2731819/1‑94 (MQ=60)
                                                                  ATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATAT                             >  SRR4302542.7016281/1‑94 (MQ=60)
                                                                  ATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATAT                             <  SRR4302542.6148176/94‑1 (MQ=60)
                                                                  ATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATAT                             <  SRR4302542.1655103/94‑1 (MQ=60)
                                                                  ATGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATAT                             <  SRR4302542.2221518/94‑1 (MQ=60)
                                                                   TGGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATC                            <  SRR4302542.764215/94‑1 (MQ=60)
                                                                    GGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCG                           <  SRR4302542.518045/94‑1 (MQ=60)
                                                                    GGGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCG                           >  SRR4302542.3232414/1‑94 (MQ=60)
                                                                     GGTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGG                          <  SRR4302542.1309107/94‑1 (MQ=60)
                                                                      GTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGT                         <  SRR4302542.7343671/94‑1 (MQ=60)
                                                                      GTTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGT                         <  SRR4302542.6141231/94‑1 (MQ=60)
                                                                       TTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTA                        <  SRR4302542.7471117/94‑1 (MQ=60)
                                                                       TTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTA                        <  SRR4302542.1367224/94‑1 (MQ=60)
                                                                       TTTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTA                        <  SRR4302542.195096/94‑1 (MQ=60)
                                                                        TTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTAT                       <  SRR4302542.1176174/94‑1 (MQ=60)
                                                                        TTGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTAT                       <  SRR4302542.6555724/94‑1 (MQ=60)
                                                                         TGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATT                      <  SRR4302542.2889353/94‑1 (MQ=60)
                                                                         TGTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATT                      <  SRR4302542.1577942/94‑1 (MQ=60)
                                                                          GTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTA                     <  SRR4302542.7357505/94‑1 (MQ=60)
                                                                          GTACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTA                     <  SRR4302542.4214559/94‑1 (MQ=60)
                                                                           TGCGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTAT                    <  SRR4302542.6428441/94‑1 (MQ=60)
                                                                           TACGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTAT                    <  SRR4302542.613519/94‑1 (MQ=60)
                                                                             CGACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCA                  >  SRR4302542.790451/1‑94 (MQ=60)
                                                                             CGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCA                  >  SRR4302542.5340805/1‑94 (MQ=60)
                                                                              GACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAA                 >  SRR4302542.7189828/1‑94 (MQ=60)
                                                                              GACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAA                 <  SRR4302542.3622974/94‑1 (MQ=60)
                                                                               ACTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAG                <  SRR4302542.7486066/94‑1 (MQ=60)
                                                                                CTCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGA               <  SRR4302542.7438024/94‑1 (MQ=60)
                                                                                CTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGA               >  SRR4302542.7425233/1‑94 (MQ=60)
                                                                                 TCAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAG              <  SRR4302542.7219716/94‑1 (MQ=60)
                                                                                 TCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAG              >  SRR4302542.3570434/1‑94 (MQ=60)
                                                                                  CAGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGA             <  SRR4302542.4214905/94‑1 (MQ=60)
                                                                                   AGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAG            <  SRR4302542.3965253/94‑1 (MQ=60)
                                                                                   AGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAG            >  SRR4302542.6576826/1‑94 (MQ=60)
                                                                                   AGTAACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAG            >  SRR4302542.2379317/1‑94 (MQ=60)
                                                                                    GTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGC           <  SRR4302542.6714339/94‑1 (MQ=60)
                                                                                     TAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCA          >  SRR4302542.1384171/1‑94 (MQ=60)
                                                                                      AACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAA         <  SRR4302542.283737/94‑1 (MQ=60)
                                                                                       ACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAAC        <  SRR4302542.1841042/94‑1 (MQ=60)
                                                                                       ACTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAAC        >  SRR4302542.5692971/1‑94 (MQ=60)
                                                                                        CTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACC       <  SRR4302542.726166/94‑1 (MQ=60)
                                                                                        CTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACC       <  SRR4302542.7190579/94‑1 (MQ=60)
                                                                                        CTGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACC       <  SRR4302542.1068124/94‑1 (MQ=60)
                                                                                        CTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACC       <  SRR4302542.6884668/94‑1 (MQ=60)
                                                                                         TGCAGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCG      >  SRR4302542.3471534/1‑94 (MQ=60)
                                                                                          GCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGT     <  SRR4302542.2697073/94‑1 (MQ=60)
                                                                                            AGCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAA   >  SRR4302542.4370828/1‑94 (MQ=60)
                                                                                             GCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAAT  <  SRR4302542.6851772/94‑1 (MQ=60)
                                                                                             GCATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAAT  >  SRR4302542.4020292/1‑94 (MQ=60)
                                                                                             |                                                                                             
TGGGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAAT  >  NC_000913/3629688‑3629874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑