Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATTA  >  NC_000913/3648443‑3648629
                                                                                             |                                                                                             
ATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGT                                                                                               >  SRR4302542.5901031/1‑94 (MQ=60)
ATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGT                                                                                               >  SRR4302542.6574909/1‑94 (MQ=60)
ATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGT                                                                                               <  SRR4302542.1543760/94‑1 (MQ=60)
ATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGT                                                                                               <  SRR4302542.7418618/94‑1 (MQ=60)
ATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGT                                                                                               <  SRR4302542.2710463/94‑1 (MQ=60)
 TTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTG                                                                                              <  SRR4302542.1586350/94‑1 (MQ=60)
 TTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCG                                                                                              <  SRR4302542.3441401/94‑1 (MQ=60)
   TTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCA                                                                                            >  SRR4302542.1113157/1‑94 (MQ=60)
    TGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAG                                                                                           <  SRR4302542.4318839/94‑1 (MQ=60)
    TGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAG                                                                                           <  SRR4302542.3360825/94‑1 (MQ=60)
     GCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGT                                                                                          <  SRR4302542.2956368/94‑1 (MQ=60)
      CTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTA                                                                                         <  SRR4302542.1081802/94‑1 (MQ=60)
      CTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTA                                                                                         <  SRR4302542.1938737/94‑1 (MQ=60)
       TATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAG                                                                                        <  SRR4302542.2507554/94‑1 (MQ=60)
       TATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAG                                                                                        <  SRR4302542.664947/94‑1 (MQ=60)
        ATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGT                                                                                       <  SRR4302542.5626298/94‑1 (MQ=60)
          TTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTT                                                                                     <  SRR4302542.1864118/94‑1 (MQ=60)
          TTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTT                                                                                     <  SRR4302542.824899/94‑1 (MQ=60)
          TTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTT                                                                                     <  SRR4302542.2697412/94‑1 (MQ=60)
          TTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTT                                                                                     <  SRR4302542.5255929/94‑1 (MQ=60)
             CACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAA                                                                                  <  SRR4302542.572154/94‑1 (MQ=60)
              ACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAG                                                                                 >  SRR4302542.1514613/1‑94 (MQ=60)
              ACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAG                                                                                 <  SRR4302542.2311346/94‑1 (MQ=60)
              ACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAG                                                                                 <  SRR4302542.2634544/94‑1 (MQ=60)
                AGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGAC                                                                               <  SRR4302542.2807740/94‑1 (MQ=60)
                AGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGACCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGAC                                                                               <  SRR4302542.6275439/94‑1 (MQ=60)
                 GTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACG                                                                              <  SRR4302542.4171957/94‑1 (MQ=60)
                    CTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTAC                                                                           <  SRR4302542.7289347/94‑1 (MQ=60)
                      CCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTG                                                                         <  SRR4302542.4626618/94‑1 (MQ=60)
                       CCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGG                                                                        <  SRR4302542.5079239/94‑1 (MQ=60)
                       CCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGG                                                                        <  SRR4302542.2755407/94‑1 (MQ=60)
                       CCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGG                                                                        <  SRR4302542.5264827/94‑1 (MQ=60)
                         TGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGAT                                                                      <  SRR4302542.455751/94‑1 (MQ=60)
                         TGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGAT                                                                      >  SRR4302542.2277800/1‑94 (MQ=60)
                            GTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTAT                                                                   >  SRR4302542.5689577/1‑94 (MQ=60)
                            GTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTAT                                                                   <  SRR4302542.1248739/94‑1 (MQ=60)
                             TGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATG                                                                  >  SRR4302542.1140949/1‑94 (MQ=60)
                               GGATTCCAATTATCGCGTCCAGCATGGGGAATCAGTGAGCTGCTTGGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGAACTGGATTAT‑ATT                                                               >  SRR4302542.2414129/1‑94 (MQ=60)
                               AGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGAT                                                                <  SRR4302542.3204772/94‑1 (MQ=60)
                                 ATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTT                                                              <  SRR4302542.5857624/94‑1 (MQ=60)
                                 ATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTT                                                              >  SRR4302542.4352853/1‑94 (MQ=60)
                                  TTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTA                                                             <  SRR4302542.4669574/94‑1 (MQ=60)
                                   TCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTAT                                                            <  SRR4302542.6695206/94‑1 (MQ=60)
                                   TCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTAT                                                            <  SRR4302542.6591946/94‑1 (MQ=60)
                                    CCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATC                                                           <  SRR4302542.705841/94‑1 (MQ=60)
                                     CAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCA                                                          <  SRR4302542.2171142/94‑1 (MQ=60)
                                     CAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCA                                                          <  SRR4302542.4969399/94‑1 (MQ=60)
                                      AATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAG                                                         <  SRR4302542.6839428/94‑1 (MQ=60)
                                      AATTATCGCGTCCAGCATCGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAG                                                         <  SRR4302542.4866699/94‑1 (MQ=60)
                                       ATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGT                                                        >  SRR4302542.6990518/1‑94 (MQ=60)
                                        TTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTG                                                       >  SRR4302542.777065/1‑94 (MQ=60)
                                        TTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTG                                                       <  SRR4302542.2517450/94‑1 (MQ=60)
                                          ATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGAGGT                                                     <  SRR4302542.1735312/94‑1 (MQ=60)
                                           TCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTT                                                    <  SRR4302542.5653746/94‑1 (MQ=60)
                                           TCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTT                                                    <  SRR4302542.2476938/94‑1 (MQ=60)
                                           TCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTT                                                    <  SRR4302542.1428786/94‑1 (MQ=60)
                                            CGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTT                                                   <  SRR4302542.3432171/94‑1 (MQ=60)
                                            CGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTT                                                   <  SRR4302542.2428587/94‑1 (MQ=60)
                                            CGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTT                                                   <  SRR4302542.3306277/94‑1 (MQ=60)
                                             GCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTA                                                  <  SRR4302542.1400453/94‑1 (MQ=60)
                                              CGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTAC                                                 <  SRR4302542.3737618/94‑1 (MQ=60)
                                               GTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACA                                                <  SRR4302542.614859/94‑1 (MQ=60)
                                                TCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACAC                                               >  SRR4302542.5584364/1‑94 (MQ=60)
                                                 CCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACA                                              <  SRR4302542.5668698/94‑1 (MQ=60)
                                                 CCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACA                                              <  SRR4302542.2799416/94‑1 (MQ=60)
                                                  CAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAA                                             <  SRR4302542.2168347/94‑1 (MQ=60)
                                                   AGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAAC                                            <  SRR4302542.2191218/94‑1 (MQ=60)
                                                    GCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACA                                           <  SRR4302542.2655152/94‑1 (MQ=60)
                                                    GCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACA                                           <  SRR4302542.1799710/94‑1 (MQ=60)
                                                      ATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAA                                         >  SRR4302542.816520/1‑94 (MQ=60)
                                                      ATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAA                                         <  SRR4302542.7380375/94‑1 (MQ=60)
                                                       TGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAAT                                        <  SRR4302542.873419/94‑1 (MQ=60)
                                                       TGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAAT                                        <  SRR4302542.4012315/94‑1 (MQ=60)
                                                        GGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATT                                       <  SRR4302542.1110169/94‑1 (MQ=60)
                                                        GGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATT                                       >  SRR4302542.2264621/1‑94 (MQ=60)
                                                          TGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTAT                                     <  SRR4302542.4247090/94‑1 (MQ=60)
                                                          TGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTAT                                     <  SRR4302542.3812985/94‑1 (MQ=60)
                                                          TGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTAT                                     <  SRR4302542.3197880/94‑1 (MQ=60)
                                                           GTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATT                                    >  SRR4302542.1561596/1‑94 (MQ=60)
                                                           GTATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATT                                    <  SRR4302542.7025113/94‑1 (MQ=60)
                                                             ATCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAA                                  <  SRR4302542.2047563/94‑1 (MQ=60)
                                                              TCAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAA                                 <  SRR4302542.4205590/94‑1 (MQ=60)
                                                              TCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAA                                 <  SRR4302542.1221669/94‑1 (MQ=60)
                                                               CAGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAAT                                <  SRR4302542.5415024/94‑1 (MQ=60)
                                                               CAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAAT                                <  SRR4302542.5234731/94‑1 (MQ=60)
                                                                AGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATA                               <  SRR4302542.1924431/94‑1 (MQ=60)
                                                                AGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATA                               >  SRR4302542.6590558/1‑94 (MQ=60)
                                                                AGTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATA                               <  SRR4302542.3344494/94‑1 (MQ=60)
                                                                AGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATA                               >  SRR4302542.4805768/1‑94 (MQ=60)
                                                                AGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATA                               <  SRR4302542.416590/94‑1 (MQ=60)
                                                                AGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATA                               <  SRR4302542.3674006/94‑1 (MQ=60)
                                                                 GTGAGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAA                              <  SRR4302542.6880965/94‑1 (MQ=60)
                                                                    AGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTA                           <  SRR4302542.3185440/94‑1 (MQ=60)
                                                                    AGCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTA                           <  SRR4302542.1723791/94‑1 (MQ=60)
                                                                     GCTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTAT                          <  SRR4302542.2282516/94‑1 (MQ=60)
                                                                      CTGCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATA                         <  SRR4302542.2263859/94‑1 (MQ=60)
                                                                        GCTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAG                       <  SRR4302542.7485100/94‑1 (MQ=60)
                                                                         CTTAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGA                      >  SRR4302542.1693231/1‑94 (MQ=60)
                                                                          TNAGTTATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGAT                     <  SRR4302542.3628430/94‑1 (MQ=60)
                                                                               TATCAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTT                >  SRR4302542.3508467/1‑94 (MQ=60)
                                                                                  CAGCGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAAC             <  SRR4302542.5813436/94‑1 (MQ=60)
                                                                                    GCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCC           <  SRR4302542.2035463/94‑1 (MQ=60)
                                                                                     CGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCA          <  SRR4302542.6098524/94‑1 (MQ=60)
                                                                                     CGATACAGTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCA          >  SRR4302542.2613003/1‑94 (MQ=60)
                                                                                            GTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATT   >  SRR4302542.7298493/1‑94 (MQ=60)
                                                                                            GTGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATT   >  SRR4302542.4591278/1‑94 (MQ=60)
                                                                                            GCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATT   <  SRR4302542.3243335/94‑1 (MQ=60)
                                                                                             CGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATTA  >  SRR4302542.3131381/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGTTATCAGCGATACAGCGCAGTAGTTTAAAGACGTACTGGATTATGATTTATCAGTGGTTTACACAACAAATTATTAAATAATTATAAGATACCTTAACCCATTTTATTA  >  NC_000913/3648443‑3648629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑