Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,665,449 |
T→C |
Y457C (TAC→TGC) |
yhjA ← |
putative cytochrome C peroxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,665,449 | 0 | T | C | 86.6%
| 467.8
/ 61.9
| 194 | Y457C (TAC→TGC) | yhjA | putative cytochrome C peroxidase |
| Reads supporting (aligned to +/- strand): ref base T (24/2); new base C (151/17); total (175/19) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 |
Only 100 of 200 total aligned reads displayed.
AAAACAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTT > NC_000913/3665358‑3665539
|
aaaaCAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTa > 2:3284962/1‑93 (MQ=255)
aaCAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGcaca > 2:4879591/1‑93 (MQ=255)
aaCAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGcaca > 1:5407670/1‑93 (MQ=255)
aaCAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGcaca > 2:1719688/1‑93 (MQ=255)
aaCAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGcaca < 2:2152269/93‑1 (MQ=255)
aaCAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGcaca > 1:3100804/1‑93 (MQ=255)
aCAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCacac > 2:729588/1‑93 (MQ=255)
cAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACAcc > 1:5829521/1‑93 (MQ=255)
cAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACAcc < 2:3346405/93‑1 (MQ=255)
aGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACAccc > 1:1130843/1‑93 (MQ=255)
aGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACAccc > 2:4739917/1‑93 (MQ=255)
gACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACAcccc > 2:3717488/1‑93 (MQ=255)
cTTTATTATCGTAAAAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGt > 2:5187170/1‑93 (MQ=255)
tttATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGtt > 2:4931590/1‑93 (MQ=255)
tttATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGtt > 2:2446505/1‑93 (MQ=255)
tttATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGtt > 2:4582434/1‑93 (MQ=255)
attatCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAg > 1:1850091/1‑93 (MQ=255)
ttatCGTAGTAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGa > 2:4860666/1‑93 (MQ=255)
tatCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGAc > 1:7205934/1‑93 (MQ=255)
gTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACtgtg > 1:1814963/1‑93 (MQ=255)
taataaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGc > 1:2541034/1‑93 (MQ=255)
taataaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGc > 2:2035734/1‑93 (MQ=255)
taataaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGc > 2:2791983/1‑93 (MQ=255)
ataaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAg > 1:1262744/1‑93 (MQ=255)
ataaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAg > 1:3603878/1‑93 (MQ=255)
ataaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAg > 2:4157871/1‑93 (MQ=255)
ataaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAg > 2:508458/1‑93 (MQ=255)
taaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAgg > 2:2502038/1‑93 (MQ=255)
taaAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAgg > 1:2765188/1‑93 (MQ=255)
aTCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGc > 2:3787684/1‑93 (MQ=255)
aTCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGc > 2:3811545/1‑93 (MQ=255)
tCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCt > 2:6602032/1‑93 (MQ=255)
tCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCt > 2:1194478/1‑93 (MQ=255)
gCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTAc > 1:2319240/1‑93 (MQ=255)
gCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTAc > 2:5411102/1‑93 (MQ=255)
gCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTAc > 1:7264901/1‑93 (MQ=255)
cccAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACg > 2:5236340/1‑93 (MQ=255)
ccAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGa > 2:4111245/1‑93 (MQ=255)
cAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGat > 1:536853/1‑93 (MQ=255)
aaaCATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGata < 2:697457/93‑1 (MQ=255)
aaCATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGatat > 2:5325869/1‑93 (MQ=255)
aCATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATatc > 2:6618951/1‑93 (MQ=255)
cATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATatca < 1:4540891/93‑1 (MQ=255)
cATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATatca > 1:4083522/1‑93 (MQ=255)
aTTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATatcat > 2:3996805/1‑93 (MQ=255)
aTTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATatcat > 2:7442119/1‑93 (MQ=255)
aTTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATatcat > 2:5693360/1‑93 (MQ=255)
cTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCcac > 2:637586/1‑93 (MQ=255)
tGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCcaca > 1:1888533/1‑93 (MQ=255)
gTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAt > 1:6043243/1‑93 (MQ=255)
gTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAt > 2:1011109/1‑93 (MQ=255)
ttCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAtc > 1:6161195/1‑93 (MQ=255)
ttCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAtc > 2:1801559/1‑93 (MQ=255)
gggCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAtcctc > 2:2263260/1‑93 (MQ=255)
gggCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAtcctc > 2:3516266/1‑93 (MQ=255)
gggCGATAAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAtcctc > 1:776790/1‑93 (MQ=255)
gCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATcctcct > 1:4342899/1‑93 (MQ=255)
gCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATcctcct > 2:7119886/1‑93 (MQ=255)
gATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGc > 1:1909256/1‑93 (MQ=255)
gATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGc > 1:4170987/1‑93 (MQ=255)
gATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGc > 1:460064/1‑93 (MQ=255)
gATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGc > 1:6291675/1‑93 (MQ=255)
aTCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCg > 2:6016581/1‑93 (MQ=255)
tCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCgg > 2:4346606/1‑93 (MQ=255)
tCAAATTAATTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCgg > 2:1673850/1‑93 (MQ=255)
aattaattATTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAg > 1:6261278/1‑93 (MQ=255)
taattaTTGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGctc > 1:7347935/1‑93 (MQ=255)
attattGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCtt > 2:4418163/1‑93 (MQ=255)
ttattGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCttt < 1:714584/93‑1 (MQ=255)
ttattGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCttt > 1:4212164/1‑93 (MQ=255)
ttattGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCttt < 2:1302915/93‑1 (MQ=255)
attGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGc > 2:3562615/1‑93 (MQ=255)
ttGTTTATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGcc > 2:162078/1‑93 (MQ=255)
ttATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTAcc > 1:6461054/1‑93 (MQ=255)
tATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCt > 1:4596575/1‑93 (MQ=255)
tATCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCt > 1:4842760/1‑93 (MQ=255)
aTCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTg > 2:7524565/1‑93 (MQ=255)
aTCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTg > 1:3158851/1‑93 (MQ=255)
aTCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTg > 1:5142729/1‑93 (MQ=255)
tCCTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGa > 2:3600648/1‑93 (MQ=255)
ccTGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGAt > 1:212554/1‑93 (MQ=255)
cTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATa > 1:7125086/1‑93 (MQ=255)
tGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAg > 1:1481921/1‑93 (MQ=255)
tGCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAg > 1:6903275/1‑93 (MQ=255)
gCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAgc > 1:4765136/1‑93 (MQ=255)
gCATATACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAgc > 2:2648973/1‑93 (MQ=255)
atatACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAgcgc > 2:823290/1‑93 (MQ=255)
atatACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAgcgc > 1:2957766/1‑93 (MQ=255)
atatACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAgcgc > 1:3303435/1‑93 (MQ=255)
atatACGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAgcgc > 2:1564122/1‑93 (MQ=255)
tataCGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCgca > 2:5647863/1‑93 (MQ=255)
tataCGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCgca > 1:6355577/1‑93 (MQ=255)
tataCGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCgca > 2:6741923/1‑93 (MQ=255)
tataCGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCgca > 1:7401246/1‑93 (MQ=255)
tataCGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCgca > 1:1007124/1‑93 (MQ=255)
taCGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCgcagc > 1:3945409/1‑93 (MQ=255)
taCGGCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCgcagc > 2:235573/1‑93 (MQ=255)
ggCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATc < 2:2293213/93‑1 (MQ=255)
gCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCa > 1:6625133/1‑93 (MQ=255)
gCGTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCa > 2:3163971/1‑93 (MQ=255)
|
AAAACAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTT > NC_000913/3665358‑3665539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAAAAACAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCA > NC_000913/3665356‑3665542
|
TAAAAACAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGC > SRR4302542.710133/1‑94 (MQ=60)
AAACAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACA > SRR4302542.3130266/1‑94 (MQ=60)
AAACAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACA > SRR4302542.5460198/1‑94 (MQ=60)
ACAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACC > SRR4302542.5886097/1‑94 (MQ=60)
CAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCC > SRR4302542.1140522/1‑94 (MQ=60)
CAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCC > SRR4302542.6760192/1‑94 (MQ=60)
AGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCC > SRR4302542.1906293/1‑94 (MQ=60)
CTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTT > SRR4302542.6348816/1‑94 (MQ=60)
TTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTC > SRR4302542.7150088/1‑94 (MQ=60)
TATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAG > SRR4302542.1866095/1‑94 (MQ=60)
TTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGAC > SRR4302542.7276657/1‑94 (MQ=60)
TATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACT > SRR4302542.1878360/1‑94 (MQ=60)
ATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGGTCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTG > SRR4302542.6168498/1‑94 (MQ=60)
CGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTG > SRR4302542.1830683/1‑94 (MQ=60)
CGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTG > SRR4302542.4643360/1‑94 (MQ=60)
GTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGC > SRR4302542.2048061/1‑94 (MQ=60)
GTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGC > SRR4302542.2565666/1‑94 (MQ=60)
AATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAG > SRR4302542.1273597/1‑94 (MQ=60)
AATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAG > SRR4302542.3637464/1‑94 (MQ=60)
AATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAG < SRR4302542.3584197/94‑1 (MQ=60)
AATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAG > SRR4302542.2870422/1‑94 (MQ=60)
ATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGG > SRR4302542.2791834/1‑94 (MQ=60)
AAAATCGCCCAAACATTGCTGTTCGCGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAA > SRR4302542.4059960/1‑94 (MQ=60)
AATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGC < SRR4302542.7202937/94‑1 (MQ=60)
AATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGC > SRR4302542.3264422/1‑94 (MQ=60)
CGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTAC > SRR4302542.2339129/1‑94 (MQ=60)
CGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTAC > SRR4302542.7336117/1‑94 (MQ=60)
CCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGAT > SRR4302542.541496/1‑94 (MQ=60)
CCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGAT > SRR4302542.892270/1‑94 (MQ=60)
CCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGAT > SRR4302542.7417919/1‑94 (MQ=60)
AAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATAT > SRR4302542.754246/1‑94 (MQ=60)
ACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCA > SRR4302542.4123762/1‑94 (MQ=60)
CATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCAT > SRR4302542.2300634/1‑94 (MQ=60)
CATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCAT < SRR4302542.4585344/94‑1 (MQ=60)
ATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATC > SRR4302542.4183058/1‑94 (MQ=60)
ATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATC > SRR4302542.6445610/1‑94 (MQ=60)
CTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACA > SRR4302542.6388494/1‑94 (MQ=60)
CTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACA > SRR4302542.1904878/1‑94 (MQ=60)
TGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAT > SRR4302542.3093011/1‑94 (MQ=60)
TGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAT > SRR4302542.6101740/1‑94 (MQ=60)
GTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATC > SRR4302542.6220880/1‑94 (MQ=60)
TCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCT > SRR4302542.4436064/1‑94 (MQ=60)
CGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTC > SRR4302542.1633420/1‑94 (MQ=60)
CGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTC > SRR4302542.2494676/1‑94 (MQ=60)
CGGGCGATAAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTC > SRR4302542.783502/1‑94 (MQ=60)
TGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCC > SRR4302542.562065/1‑94 (MQ=60)
GGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCT > SRR4302542.4385562/1‑94 (MQ=60)
GGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCT < SRR4302542.3932081/94‑1 (MQ=60)
CGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGC > SRR4302542.2721021/1‑94 (MQ=60)
CGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGC > SRR4302542.6353666/1‑94 (MQ=60)
CGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGC > SRR4302542.464043/1‑94 (MQ=60)
CGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGC > SRR4302542.4212124/1‑94 (MQ=60)
CGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGC > SRR4302542.1925758/1‑94 (MQ=60)
GATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCG > SRR4302542.1145488/1‑94 (MQ=60)
TCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGC > SRR4302542.5019332/1‑94 (MQ=60)
TCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGC > SRR4302542.4237042/1‑94 (MQ=60)
CAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCA > SRR4302542.1083417/1‑94 (MQ=60)
AAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAG > SRR4302542.6322975/1‑94 (MQ=60)
AAATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAG > SRR4302542.6594774/1‑94 (MQ=60)
ATTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCT > SRR4302542.4602042/1‑94 (MQ=60)
TTAATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTC > SRR4302542.7419902/1‑94 (MQ=60)
ATTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTT > SRR4302542.4253674/1‑94 (MQ=60)
TTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTG < SRR4302542.720746/94‑1 (MQ=60)
TTATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTG > SRR4302542.7439154/1‑94 (MQ=60)
TATTGTTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGC > SRR4302542.4324288/1‑94 (MQ=60)
TTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACC > SRR4302542.5379429/1‑94 (MQ=60)
TTTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACC > SRR4302542.6524669/1‑94 (MQ=60)
TTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCT > SRR4302542.4641518/1‑94 (MQ=60)
TTATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCT > SRR4302542.4889924/1‑94 (MQ=60)
TATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTG > SRR4302542.7241701/1‑94 (MQ=60)
TATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTG > SRR4302542.3188838/1‑94 (MQ=60)
TATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTG > SRR4302542.5192716/1‑94 (MQ=60)
ATCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGA > SRR4302542.7329076/1‑94 (MQ=60)
TCCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGAT > SRR4302542.214379/1‑94 (MQ=60)
CCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATA > SRR4302542.7195015/1‑94 (MQ=60)
CCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATA > SRR4302542.1847994/1‑94 (MQ=60)
CCTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATA > SRR4302542.5892695/1‑94 (MQ=60)
CTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAG > SRR4302542.6971049/1‑94 (MQ=60)
CTGCATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAG > SRR4302542.1494716/1‑94 (MQ=60)
TGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGC > SRR4302542.4811586/1‑94 (MQ=60)
CATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGC > SRR4302542.2986118/1‑94 (MQ=60)
CATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGC > SRR4302542.5876072/1‑94 (MQ=60)
CATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGC > SRR4302542.3334590/1‑94 (MQ=60)
ATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCA > SRR4302542.1428582/1‑94 (MQ=60)
ATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGTTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCA > SRR4302542.6272369/1‑94 (MQ=60)
ATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCA > SRR4302542.6418178/1‑94 (MQ=60)
ATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCA > SRR4302542.1015803/1‑94 (MQ=60)
ATATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCA > SRR4302542.7473675/1‑94 (MQ=60)
TATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAG > SRR4302542.4861833/1‑94 (MQ=60)
ATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGC > SRR4302542.3139301/1‑94 (MQ=60)
ATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGC > SRR4302542.4782280/1‑94 (MQ=60)
ATACGGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGC > SRR4302542.3984371/1‑94 (MQ=60)
CGGCGTTGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCAT > SRR4302542.2393636/1‑94 (MQ=60)
GGCG‑TGCACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCA > SRR4302542.6690452/1‑94 (MQ=60)
CACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATGCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCA > SRR4302542.6282493/1‑94 (MQ=60)
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TAAAAACAGACTTTATTATCGTAATAAAAATCGCCCAAACATTGCTGTTCGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCG‑TGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCA > NC_000913/3665356‑3665542
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
