Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,667,169	T→C	intergenic (‑351/‑53)	yhjA ← / → treF	putative cytochrome C peroxidase/cytoplasmic trehalase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,667,169	0	T	C	84.6%	591.8 / 98.2	260	intergenic (‑351/‑53)	yhjA/treF	putative cytochrome C peroxidase/cytoplasmic trehalase
Reads supporting (aligned to +/- strand): ref base T (19/21); new base C (105/115); total (124/136)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.39e-01

Only 100 of 263 total aligned reads displayed.

AATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGAC  >  NC_000913/3667077‑3667257

aaTTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACt                                                                                          <  1:3099345/93‑1 (MQ=255)

 aTTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTa                                                                                         <  1:2684901/93‑1 (MQ=255)

  ttCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTAc                                                                                        >  2:5937672/1‑93 (MQ=255)

   tCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGaccacc                                                                                       >  1:4211820/1‑93 (MQ=255)

    ccATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCAccc                                                                                      >  2:6393573/1‑93 (MQ=255)

    ccATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCAccc                                                                                      <  2:2546306/93‑1 (MQ=255)

     cATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCt                                                                                     >  2:4708990/1‑93 (MQ=255)

      aTTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCtt                                                                                    >  1:446390/1‑93 (MQ=255)

       ttGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTa                                                                                   >  2:3715630/1‑93 (MQ=255)

        tGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTaa                                                                                  <  1:2138215/93‑1 (MQ=255)

        tGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTaa                                                                                  <  1:3639793/93‑1 (MQ=255)

         gATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTaaa                                                                                 <  1:6423107/93‑1 (MQ=255)

         gATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTaaa                                                                                 <  1:633692/93‑1 (MQ=255)

          atatTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAg                                                                                <  1:4134126/93‑1 (MQ=255)

          atatTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAg                                                                                <  1:1386709/93‑1 (MQ=255)

           tatTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGa                                                                               >  1:5408021/1‑93 (MQ=255)

              tAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGaaaa                                                                            <  1:277974/93‑1 (MQ=255)

              tAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGaaaa                                                                            <  2:6468662/93‑1 (MQ=255)

                 tGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGcc                                                                         >  1:6643497/1‑93 (MQ=255)

                 tGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGcc                                                                         >  2:5368539/1‑93 (MQ=255)

                  gCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCg                                                                        >  2:664491/1‑93 (MQ=255)

                   cGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGa                                                                       >  1:1608570/1‑93 (MQ=255)

                     ttATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATa                                                                     >  1:3018343/1‑93 (MQ=255)

                     ttATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATa                                                                     >  2:1087541/1‑93 (MQ=255)

                      tataTTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATaa                                                                    >  2:5801935/1‑93 (MQ=255)

                      tataTTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATaa                                                                    >  2:4820281/1‑93 (MQ=255)

                          ttttttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGGGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAg                                                                >  1:4934121/1‑93 (MQ=255)

                          ttttttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAg                                                                >  2:3950324/1‑93 (MQ=255)

                          ttttttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAg                                                                >  2:2657351/1‑93 (MQ=255)

                           tttttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGc                                                               <  2:4146406/93‑1 (MQ=255)

                             tttGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGcga                                                             <  1:3776107/93‑1 (MQ=255)

                                gACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGcgacga                                                          <  1:7209243/93‑1 (MQ=255)

                                gACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGcgacga                                                          >  2:736441/1‑93 (MQ=255)

                                 aCAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGaa                                                         <  1:32867/93‑1 (MQ=255)

                                   aGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAAtt                                                       >  2:5259524/1‑93 (MQ=255)

                                     gTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTc                                                     >  1:6945381/1‑93 (MQ=255)

                                      ttAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCg                                                    <  1:5865454/93‑1 (MQ=255)

                                        aataaACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGa                                                  >  2:708821/1‑93 (MQ=255)

                                        aataaACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGa                                                  >  2:7149515/1‑93 (MQ=255)

                                         ataaACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAg                                                 <  2:4059021/93‑1 (MQ=255)

                                         ataaACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAg                                                 <  2:4229361/93‑1 (MQ=255)

                                         ataaACGTGATCCACCGCACGCTTTGTCGCCCACCAGCCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAg                                                 <  2:1504936/93‑1 (MQ=255)

                                            aaCGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGtt                                              >  2:6094229/1‑93 (MQ=255)

                                             aCGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTg                                             >  2:6278230/1‑93 (MQ=255)

                                              cGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTgg                                            <  1:4710632/93‑1 (MQ=255)

                                              cGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTgg                                            <  1:1044913/93‑1 (MQ=255)

                                               gTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGa                                           <  2:3431394/93‑1 (MQ=255)

                                                tGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGAt                                          <  2:1332004/93‑1 (MQ=255)

                                                  aTCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATcc                                        >  1:857397/1‑93 (MQ=255)

                                                  aTCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATcc                                        <  1:6127663/93‑1 (MQ=255)

                                                   tCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCt                                       >  1:7203232/1‑93 (MQ=255)

                                                   tCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCt                                       >  1:3357849/1‑93 (MQ=255)

                                                   tCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCt                                       <  2:1823874/93‑1 (MQ=255)

                                                    ccACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCtt                                      <  1:2738583/93‑1 (MQ=255)

                                                     cACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTa                                     <  1:1003755/93‑1 (MQ=255)

                                                     cACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTa                                     <  1:3591051/93‑1 (MQ=255)

                                                     cACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTa                                     >  1:5663922/1‑93 (MQ=255)

                                                      aCCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAt                                    >  1:3962660/1‑93 (MQ=255)

                                                      aCCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAt                                    <  2:1911178/93‑1 (MQ=255)

                                                        cGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGc                                  >  2:1747321/1‑93 (MQ=255)

                                                        cGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGc                                  >  1:17720/1‑93 (MQ=255)

                                                        cGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGc                                  <  2:7475387/93‑1 (MQ=255)

                                                        cGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGc                                  >  1:3849703/1‑93 (MQ=255)

                                                        cGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGc                                  <  2:4013424/93‑1 (MQ=255)

                                                          cACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTc                                >  1:6484026/1‑93 (MQ=255)

                                                          cACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTc                                >  2:2320373/1‑93 (MQ=255)

                                                          cACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTc                                <  1:658503/93‑1 (MQ=255)

                                                           aCGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCa                               >  2:3213570/1‑93 (MQ=255)

                                                           aCGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCa                               >  1:531460/1‑93 (MQ=255)

                                                            cGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCaa                              <  2:4532942/93‑1 (MQ=255)

                                                              cTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATc                            >  1:3370749/1‑93 (MQ=255)

                                                              cTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATc                            >  2:4656347/1‑93 (MQ=255)

                                                              cTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATc                            >  1:4616520/1‑93 (MQ=255)

                                                               tttGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCa                           >  1:5498877/1‑93 (MQ=255)

                                                               tttGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCa                           <  1:6689535/93‑1 (MQ=255)

                                                                 tGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGa                         <  1:1433363/93‑1 (MQ=255)

                                                                  gTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGaa                        >  2:1562868/1‑93 (MQ=255)

                                                                    cGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGaaaa                      <  2:3047798/93‑1 (MQ=255)

                                                                    cGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGaaaa                      <  2:6606538/93‑1 (MQ=255)

                                                                     gCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAAt                     <  2:768083/93‑1 (MQ=255)

                                                                       ccaccaGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTc                   <  2:5137111/93‑1 (MQ=255)

                                                                        caccaGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCa                  <  1:5614986/93‑1 (MQ=255)

                                                                        caccaGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCa                  >  2:6676584/1‑93 (MQ=255)

                                                                         accaGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCaa                 >  2:7310300/1‑93 (MQ=255)

                                                                           caGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCaaaa               <  2:5620048/93‑1 (MQ=255)

                                                                           caGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCaaaa               <  1:2488415/93‑1 (MQ=255)

                                                                           caGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCaaaa               <  2:4883798/93‑1 (MQ=255)

                                                                           caGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCaaaa               <  2:5036885/93‑1 (MQ=255)

                                                                              gCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAAccc            <  2:5303067/93‑1 (MQ=255)

                                                                                ggAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTa          <  2:5438748/93‑1 (MQ=255)

                                                                                 gAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTaa         >  2:2944041/1‑93 (MQ=255)

                                                                                  aGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAAt        >  2:1044469/1‑93 (MQ=255)

                                                                                     gAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCa     >  1:5991089/1‑93 (MQ=255)

                                                                                     gAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCa     >  1:3491823/1‑93 (MQ=255)

                                                                                     gAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCa     <  1:4353198/93‑1 (MQ=255)

                                                                                      aaTGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAg    >  1:3253112/1‑93 (MQ=255)

                                                                                      aaTGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAg    >  1:5774285/1‑93 (MQ=255)

                                                                                        tGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGAc  <  1:2502350/93‑1 (MQ=255)

                                                                                        tGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGAc  >  1:1850168/1‑93 (MQ=255)

                                                                                        tGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGAc  >  2:4419227/1‑93 (MQ=255)

AATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGAC  >  NC_000913/3667077‑3667257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACT  >  NC_000913/3667077‑3667262

AATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTA                                                                                              <  SRR4302542.3128801/94‑1 (MQ=60)

AATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCA                                                                                              >  SRR4302542.3451573/1‑94 (MQ=60)

 ATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTAC                                                                                             <  SRR4302542.2710791/94‑1 (MQ=60)

 ATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCAC                                                                                             <  SRR4302542.7336105/94‑1 (MQ=60)

  TTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACC                                                                                            <  SRR4302542.5555604/94‑1 (MQ=60)

  TTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACC                                                                                            >  SRR4302542.4085296/1‑94 (MQ=60)

  TTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACC                                                                                            >  SRR4302542.4253327/1‑94 (MQ=60)

   TCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCC                                                                                           >  SRR4302542.2875875/1‑94 (MQ=60)

     CATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTT                                                                                         >  SRR4302542.450250/1‑94 (MQ=60)

        TGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAA                                                                                      <  SRR4302542.2156664/94‑1 (MQ=60)

        TGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAA                                                                                      <  SRR4302542.3673737/94‑1 (MQ=60)

         GATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAG                                                                                     <  SRR4302542.6486402/94‑1 (MQ=60)

         GATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAG                                                                                     <  SRR4302542.639150/94‑1 (MQ=60)

          ATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGA                                                                                    <  SRR4302542.4174862/94‑1 (MQ=60)

          ATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGA                                                                                    <  SRR4302542.1398689/94‑1 (MQ=60)

          ATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGA                                                                                    >  SRR4302542.5460552/1‑94 (MQ=60)

          ATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGA                                                                                    <  SRR4302542.3301022/94‑1 (MQ=60)

           TATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAA                                                                                   <  SRR4302542.2915253/94‑1 (MQ=60)

              TAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAG                                                                                <  SRR4302542.3308707/94‑1 (MQ=60)

              TAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAG                                                                                <  SRR4302542.280349/94‑1 (MQ=60)

              TAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAG                                                                                <  SRR4302542.5736036/94‑1 (MQ=60)

              TAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAG                                                                                <  SRR4302542.4389120/94‑1 (MQ=60)

                GTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCC                                                                              >  SRR4302542.6708978/1‑94 (MQ=60)

                GTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCC                                                                              <  SRR4302542.219422/94‑1 (MQ=60)

                 TGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCG                                                                             <  SRR4302542.6876435/94‑1 (MQ=60)

                 TGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCG                                                                             >  SRR4302542.593666/1‑94 (MQ=60)

                  GCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGA                                                                            >  SRR4302542.1622462/1‑94 (MQ=60)

                   CGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGAT                                                                           <  SRR4302542.5714969/94‑1 (MQ=60)

                   CGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGAT                                                                           >  SRR4302542.3124643/1‑94 (MQ=60)

                   CGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGAT                                                                           <  SRR4302542.2795991/94‑1 (MQ=60)

                    GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATA                                                                          >  SRR4302542.3047177/1‑94 (MQ=60)

                    GTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGANN                                                                          >  SRR4302542.2507825/1‑94 (MQ=60)

                     TTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAA                                                                         >  SRR4302542.5034739/1‑94 (MQ=60)

                      TATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAAT                                                                        >  SRR4302542.5483865/1‑94 (MQ=60)

                      TATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAAT                                                                        <  SRR4302542.5465985/94‑1 (MQ=60)

                       ATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATT                                                                       <  SRR4302542.4782003/94‑1 (MQ=60)

                         ATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGGGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAG                                                                     >  SRR4302542.4982081/1‑94 (MQ=60)

                         ATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAG                                                                     <  SRR4302542.362768/94‑1 (MQ=60)

                         ATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAG                                                                     >  SRR4302542.1300234/1‑94 (MQ=60)

                         ATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAG                                                                     <  SRR4302542.6667805/94‑1 (MQ=60)

                          TTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGC                                                                    <  SRR4302542.7578022/94‑1 (MQ=60)

                          TTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGC                                                                    >  SRR4302542.2064253/1‑94 (MQ=60)

                          TTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGC                                                                    <  SRR4302542.6399963/94‑1 (MQ=60)

                           TTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCG                                                                   <  SRR4302542.1428069/94‑1 (MQ=60)

                           TTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCG                                                                   <  SRR4302542.3395094/94‑1 (MQ=60)

                             TTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGAC                                                                 <  SRR4302542.3813466/94‑1 (MQ=60)

                             TTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGAC                                                                 <  SRR4302542.4560417/94‑1 (MQ=60)

                               TGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGA                                                               <  SRR4302542.7245239/94‑1 (MQ=60)

                               TGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGA                                                               >  SRR4302542.322369/1‑94 (MQ=60)

                                GACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAA                                                              <  SRR4302542.7279988/94‑1 (MQ=60)

                                GACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAA                                                              <  SRR4302542.7279989/94‑1 (MQ=60)

                                 ACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAAT                                                             <  SRR4302542.33159/94‑1 (MQ=60)

                                 ACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAAT                                                             <  SRR4302542.6087533/94‑1 (MQ=60)

                                  CAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATT                                                            >  SRR4302542.5631055/1‑94 (MQ=60)

                                  CAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATT                                                            >  SRR4302542.1864335/1‑94 (MQ=60)

                                   AGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTT                                                           <  SRR4302542.2674974/94‑1 (MQ=60)

                                    GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                                          >  SRR4302542.7013620/1‑94 (MQ=60)

                                    GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                                          <  SRR4302542.3955353/94‑1 (MQ=60)

                                    GGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTC                                                          >  SRR4302542.1457874/1‑94 (MQ=60)

                                      TTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATTACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGG                                                        <  SRR4302542.3414274/94‑1 (MQ=60)

                                      TTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGG                                                        <  SRR4302542.5922317/94‑1 (MQ=60)

                                       TAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGA                                                       >  SRR4302542.364161/1‑94 (MQ=60)

                                        AATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAG                                                      <  SRR4302542.3812133/94‑1 (MQ=60)

                                        AATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAG                                                      >  SRR4302542.6563896/1‑94 (MQ=60)

                                         ATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGG                                                     <  SRR4302542.3846259/94‑1 (MQ=60)

                                         ATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGG                                                     >  SRR4302542.5371188/1‑94 (MQ=60)

                                          TAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGT                                                    <  SRR4302542.5180820/94‑1 (MQ=60)

                                           AAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTT                                                   <  SRR4302542.2760940/94‑1 (MQ=60)

                                             ACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGG                                                 <  SRR4302542.2057767/94‑1 (MQ=60)

                                             ACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGG                                                 <  SRR4302542.7149872/94‑1 (MQ=60)

                                             ACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGG                                                 >  SRR4302542.6525123/1‑94 (MQ=60)

                                              CGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGA                                                >  SRR4302542.5783074/1‑94 (MQ=60)

                                              CGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGA                                                <  SRR4302542.4756572/94‑1 (MQ=60)

                                              CGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGA                                                <  SRR4302542.4717107/94‑1 (MQ=60)

                                              CGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGA                                                >  SRR4302542.6150911/1‑94 (MQ=60)

                                              CGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGA                                                <  SRR4302542.1053878/94‑1 (MQ=60)

                                                TGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATC                                              <  SRR4302542.2768352/94‑1 (MQ=60)

                                                 GATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCC                                             >  SRR4302542.864786/1‑94 (MQ=60)

                                                 GATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCC                                             <  SRR4302542.6939270/94‑1 (MQ=60)

                                                  ATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCT                                            <  SRR4302542.6186956/94‑1 (MQ=60)

                                                  ATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCT                                            >  SRR4302542.2593411/1‑94 (MQ=60)

                                                  ATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCT                                            >  SRR4302542.3389418/1‑94 (MQ=60)

                                                  ATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCT                                            >  SRR4302542.7273927/1‑94 (MQ=60)

                                                   TCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTT                                           <  SRR4302542.4482822/94‑1 (MQ=60)

                                                   TCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTT                                           >  SRR4302542.339021/1‑94 (MQ=60)

                                                   TCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTT                                           <  SRR4302542.583650/94‑1 (MQ=60)

                                                    CCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTA                                          <  SRR4302542.2764993/94‑1 (MQ=60)

                                                    CCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTA                                          >  SRR4302542.5718939/1‑94 (MQ=60)

                                                     CACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAT                                         <  SRR4302542.1012399/94‑1 (MQ=60)

                                                     CACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAT                                         <  SRR4302542.4872188/94‑1 (MQ=60)

                                                     CACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAT                                         <  SRR4302542.3624543/94‑1 (MQ=60)

                                                     CACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAT                                         >  SRR4302542.4001789/1‑94 (MQ=60)

                                                     CACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAT                                         >  SRR4302542.6016152/1‑94 (MQ=60)

                                                     CACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTAT                                         <  SRR4302542.4197494/94‑1 (MQ=60)

                                                      ACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATG                                        >  SRR4302542.1017684/1‑94 (MQ=60)

                                                       CCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGC                                       >  SRR4302542.17878/1‑94 (MQ=60)

                                                       CCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGC                                       >  SRR4302542.3887739/1‑94 (MQ=60)

                                                        CGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCT                                      <  SRR4302542.1669171/94‑1 (MQ=60)

                                                        CGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCT                                      >  SRR4302542.1290948/1‑94 (MQ=60)

                                                        CGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCT                                      <  SRR4302542.4265587/94‑1 (MQ=60)

                                                         GCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTC                                     >  SRR4302542.6547915/1‑94 (MQ=60)

                                                         GCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTC                                     >  SRR4302542.6453803/1‑94 (MQ=60)

                                                          CACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCA                                    <  SRR4302542.664183/94‑1 (MQ=60)

                                                          CACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCA                                    >  SRR4302542.536049/1‑94 (MQ=60)

                                                           ACGCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAA                                   >  SRR4302542.6665292/1‑94 (MQ=60)

                                                             GCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATC                                 >  SRR4302542.3402395/1‑94 (MQ=60)

                                                             GCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATC                                 >  SRR4302542.4661623/1‑94 (MQ=60)

                                                             GCTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATC                                 >  SRR4302542.3607914/1‑94 (MQ=60)

                                                              CTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCA                                >  SRR4302542.5552288/1‑94 (MQ=60)

                                                              CTTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCA                                >  SRR4302542.6730147/1‑94 (MQ=60)

                                                               TTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAG                               <  SRR4302542.1004/94‑1 (MQ=60)

                                                               TTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAG                               <  SRR4302542.6755434/94‑1 (MQ=60)

                                                               TTTGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAG                               <  SRR4302542.3823693/94‑1 (MQ=60)

                                                                 TGTCGCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAA                             <  SRR4302542.1445748/94‑1 (MQ=60)

                                                                     GCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATT                         <  SRR4302542.3616360/94‑1 (MQ=60)

                                                                     GCCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATT                         >  SRR4302542.2517610/1‑94 (MQ=60)

                                                                      CCCACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTC                        <  SRR4302542.3954051/94‑1 (MQ=60)

                                                                        CACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAA                      >  SRR4302542.652466/1‑94 (MQ=60)

                                                                        CACCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAA                      <  SRR4302542.5669536/94‑1 (MQ=60)

                                                                          CCAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAA                    >  SRR4302542.3248351/1‑94 (MQ=60)

                                                                           CAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAAC                   <  SRR4302542.4231739/94‑1 (MQ=60)

                                                                           CAGGCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAAC                   <  SRR4302542.2512560/94‑1 (MQ=60)

                                                                            AGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACC                  <  SRR4302542.7411117/94‑1 (MQ=60)

                                                                              GCGGAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCT                <  SRR4302542.1773337/94‑1 (MQ=60)

                                                                                 GAGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAAT             <  SRR4302542.6325104/94‑1 (MQ=60)

                                                                                  AGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATC            <  SRR4302542.4583437/94‑1 (MQ=60)

                                                                                  AGCGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATC            <  SRR4302542.3342859/94‑1 (MQ=60)

                                                                                    CGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCA          >  SRR4302542.6049119/1‑94 (MQ=60)

                                                                                    CGAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCA          >  SRR4302542.3524476/1‑94 (MQ=60)

                                                                                     GAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAG         >  SRR4302542.3283836/1‑94 (MQ=60)

                                                                                     GAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAG         <  SRR4302542.4395967/94‑1 (MQ=60)

                                                                                     GAATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAG         >  SRR4302542.5830335/1‑94 (MQ=60)

                                                                                       ATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGAC       >  SRR4302542.1503449/1‑94 (MQ=60)

                                                                                       ATGACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGAC       >  SRR4302542.1866172/1‑94 (MQ=60)

                                                                                        TGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACG      <  SRR4302542.2526645/94‑1 (MQ=60)

                                                                                         GACCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGA     >  SRR4302542.7140390/1‑94 (MQ=60)

                                                                                           CCACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAAC   <  SRR4302542.1984539/94‑1 (MQ=60)

                                                                                            CACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACT  <  SRR4302542.1645166/94‑1 (MQ=60)

                                                                                            CACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACT  >  SRR4302542.1449133/1‑94 (MQ=60)

                                                                                            CACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACT  <  SRR4302542.2104724/94‑1 (MQ=60)

                                                                                            CACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACT  >  SRR4302542.414331/1‑94 (MQ=60)

                                                                                            CACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACT  <  SRR4302542.7453733/94‑1 (MQ=60)

                                                                                            CACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACT  <  SRR4302542.6468265/94‑1 (MQ=60)

AATTCCATTGATATTAGTGCGTTATATTTTTTGACAGGTTAATAAACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACT  >  NC_000913/3667077‑3667262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`