Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,675,076 +G coding (920/2076 nt) yhjG ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,675,0721.G82.1% 777.2 / 170.0 279coding (924/2076 nt)yhjGhypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (19/31);  new base G (128/101);  total (147/132)
Fisher's exact test for biased strand distribution p-value = 2.81e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01

Only 100 of 317 total aligned reads displayed.

TCACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCC  >  NC_000913/3674980‑3675158
                                                                                             |                                                                                      
tCACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc                                                                                         <  1:3145454/93‑1 (MQ=255)
 cACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGTCGACCATCCGTTTCAAAcggc‑g                                                                                       <  2:2708528/93‑1 (MQ=255)
  gccAATTCGCCCATTAAAACCACGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑gg                                                                                      <  1:7432768/92‑1 (MQ=255)
  aCCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑gg                                                                                      >  2:3694032/1‑93 (MQ=255)
  aCCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑gg                                                                                      <  1:3382102/93‑1 (MQ=255)
  aCCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑gg                                                                                      >  1:217830/1‑93 (MQ=255)
  aCCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑gg                                                                                      <  1:7019865/93‑1 (MQ=255)
   ccAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑ggg                                                                                     >  1:3768977/1‑93 (MQ=255)
   ccAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑ggg                                                                                     <  2:7325825/93‑1 (MQ=255)
   ccAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑ggg                                                                                     <  2:6891145/93‑1 (MQ=255)
    cAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gggg                                                                                    <  1:189000/93‑1 (MQ=255)
      aTTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gggggt                                                                                  >  2:651418/1‑91 (MQ=255)
       ttCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gggggta                                                                                 >  2:2482403/1‑90 (MQ=255)
       ttCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gggggta                                                                                 <  2:6270401/93‑4 (MQ=255)
       ttCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gggggta                                                                                 <  1:2478478/93‑4 (MQ=255)
       ttCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gggggga                                                                                 >  1:1709236/1‑90 (MQ=255)
          gCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCg                                                                               >  1:6969880/1‑93 (MQ=255)
            ccATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCggg                                                                             >  2:5809726/1‑93 (MQ=255)
            ccATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCggg                                                                             >  2:1723457/1‑93 (MQ=255)
            ccATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCggg                                                                             <  2:3750560/93‑1 (MQ=255)
            ccATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCggg                                                                             >  2:2584582/1‑93 (MQ=255)
            ccATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCggc                                                                             <  2:7409120/93‑2 (MQ=255)
             cATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGgc                                                                            >  2:2013330/1‑93 (MQ=255)
              aTTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGgca                                                                           >  1:1145137/1‑93 (MQ=255)
              aTTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCATTTCAAACGGCGGGGGTATCGGgca                                                                           >  1:4746939/1‑93 (MQ=255)
               ttAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGgcag                                                                          >  1:6367494/1‑93 (MQ=255)
               ttAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGgcag                                                                          >  2:5543568/1‑93 (MQ=255)
               ttAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGgcag                                                                          >  1:1452441/1‑93 (MQ=255)
                tAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGgcagc                                                                         <  2:4837879/93‑1 (MQ=255)
                 aaaaCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGcagcag                                                                       >  1:2979077/1‑93 (MQ=255)
                  aaaCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCAGGcagcag                                                                       >  1:4188391/1‑93 (MQ=255)
                   aaCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGa                                                                      >  1:2200223/1‑93 (MQ=255)
                   aaCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGaa                                                                     <  1:4489736/93‑1 (MQ=255)
                    cccGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGaa                                                                     <  1:6235643/92‑1 (MQ=255)
                    aCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGaa                                                                     <  1:2045891/93‑1 (MQ=255)
                    aCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAAc                                                                    <  1:92773/93‑1 (MQ=255)
                       gcgATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGc                                                                  >  2:7206967/1‑93 (MQ=255)
                       gcgATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGc                                                                  >  1:6452951/1‑93 (MQ=255)
                        cgATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGcc                                                                 <  2:5446155/93‑1 (MQ=255)
                        cgATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGcc                                                                 <  1:4130455/93‑1 (MQ=255)
                         gATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGccc                                                                >  1:96173/1‑93 (MQ=255)
                         gATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGccc                                                                >  2:3378593/1‑93 (MQ=255)
                            aaTCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTc                                                             <  1:5698792/93‑1 (MQ=255)
                             aTCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCa                                                            <  2:3485731/93‑1 (MQ=255)
                                aaaGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGGATCGGGCAGCAGAACGCCCGTCAGTTc                                                        >  1:1006386/1‑93 (MQ=255)
                                 aaGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGCCCGTCAGTTc                                                        >  1:6834058/1‑93 (MQ=255)
                                   gACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCAt                                                      <  2:5213292/93‑1 (MQ=255)
                                   gACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATa                                                     <  2:846965/93‑1 (MQ=255)
                                      cgacgaTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATaga                                                   >  2:3584693/1‑93 (MQ=255)
                                       gacgaTTTTTCAGTGTCGATTTTCGCTACCAGCCAACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATagag                                                  >  2:4674011/1‑93 (MQ=255)
                                        acgaTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGGAGCAGAAAGCCCGTCAGTTCATagaggt                                                >  1:4842156/1‑91 (MQ=255)
                                         cgaTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGAt                                                <  1:4273236/93‑1 (MQ=255)
                                            tttttCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAc                                             <  2:3016677/93‑1 (MQ=255)
                                            tttttCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAc                                             >  1:2381333/1‑93 (MQ=255)
                                             ttttCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAcc                                            >  1:7118366/1‑93 (MQ=255)
                                                 cAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGt                                        <  2:2299188/93‑1 (MQ=255)
                                                  aGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGTCCGTCAGTTCATAGAGATCACCCAGTg                                       >  1:6771157/1‑93 (MQ=255)
                                                   gtgtCGATTTTCGCTACCAGCCGGCCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGa                                      <  1:4923226/93‑1 (MQ=255)
                                                   gtgtCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGa                                      >  1:6533286/1‑93 (MQ=255)
                                                    tgtCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAAt                                    >  2:3895053/1‑93 (MQ=255)
                                                     gtCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGGAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAAt                                    >  1:5351751/1‑93 (MQ=255)
                                                      tCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATc                                   <  1:1921955/93‑1 (MQ=255)
                                                      tCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATc                                   <  2:7054648/93‑1 (MQ=255)
                                                       cGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCg                                  <  2:2649316/93‑1 (MQ=255)
                                                          ttttCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCa                               >  2:6789768/1‑93 (MQ=255)
                                                           tttCGCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAg                              >  1:3579547/1‑93 (MQ=255)
                                                               gCTACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGaaaa                          >  1:3532351/1‑93 (MQ=255)
                                                                cTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAt                         >  2:5791211/1‑93 (MQ=255)
                                                                cTACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAt                         <  1:5578782/93‑1 (MQ=255)
                                                                 tACCAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAtt                        >  1:3687167/1‑93 (MQ=255)
                                                                 tACCAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAtt                        >  2:3860722/1‑93 (MQ=255)
                                                                   ccAGCCGACCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTa                      >  1:4406244/1‑93 (MQ=255)
                                                                    cAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCTCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTaa                     <  1:3737935/93‑1 (MQ=255)
                                                                    cAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTaa                     <  1:6032844/93‑1 (MQ=255)
                                                                    cAGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTaa                     <  1:820730/93‑1 (MQ=255)
                                                                     aGCCGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAg                    <  2:5391005/93‑1 (MQ=255)
                                                                      gCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGcc                  <  2:2393025/93‑1 (MQ=255)
                                                                        cGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCg                 >  2:181783/1‑93 (MQ=255)
                                                                        cGACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCg                 <  1:547661/93‑1 (MQ=255)
                                                                         gACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGt                <  2:2798993/93‑1 (MQ=255)
                                                                         gACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGt                >  2:2857772/1‑93 (MQ=255)
                                                                         gACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGt                >  2:3225987/1‑93 (MQ=255)
                                                                         gACCATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGt                >  2:2906076/1‑93 (MQ=255)
                                                                          aCCATCCGTTTCAAACGGCGGGGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAATTAAGCCGTa               >  1:5742792/1‑93 (MQ=255)
                                                                           ccATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaa              >  1:4250024/1‑93 (MQ=255)
                                                                           ccATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaaa             <  2:161808/93‑1 (MQ=255)
                                                                            cATCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaaa             >  2:4523131/1‑93 (MQ=255)
                                                                            cATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAt            <  2:5027231/93‑1 (MQ=255)
                                                                             aTCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATc           <  1:5112802/93‑1 (MQ=255)
                                                                             aTCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATc           <  2:6103561/93‑1 (MQ=255)
                                                                              tCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATc           >  1:5933937/1‑93 (MQ=255)
                                                                              tCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATc           >  1:284424/1‑93 (MQ=255)
                                                                              tCCGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATc           <  1:4560553/93‑1 (MQ=255)
                                                                                cGTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGa         <  2:4331763/93‑1 (MQ=255)
                                                                                 gTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGac        <  2:5060895/93‑1 (MQ=255)
                                                                                 gTTTCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGac        <  1:2539068/93‑1 (MQ=255)
                                                                                   ttCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGacac      <  2:661014/93‑1 (MQ=255)
                                                                                   ttCAAACGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGacac      <  2:1302111/93‑1 (MQ=255)
                                                                                     cAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGc   <  2:1140068/93‑1 (MQ=255)
                                                                                       aaCGGCGGGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGcc  >  2:1476292/1‑93 (MQ=255)
                                                                                             |                                                                                      
TCACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCC  >  NC_000913/3674980‑3675158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  >  NC_000913/3674982‑3675169
                                                                                                |                                                                                             
ACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCA‑CCGTTTCAAACGGC‑G‑GGG                                                                                               >  SRR4302542.551608/1‑94 (MQ=60)
 CCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGG                                                                                               >  SRR4302542.5963328/1‑94 (MQ=60)
  CAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGG                                                                                              <  SRR4302542.3117135/94‑1 (MQ=60)
  CAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGG                                                                                              >  SRR4302542.4299326/1‑94 (MQ=60)
  CAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGG                                                                                              <  SRR4302542.190605/94‑1 (MQ=60)
    ATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGgga                                                                                            >  SRR4302542.1724087/1‑91 (MQ=60)
     TTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTAT                                                                                            <  SRR4302542.2502519/94‑1 (MQ=60)
     TCCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTAT                                                                                            <  SRR4302542.4549313/94‑1 (MQ=60)
      TCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATC                                                                                           <  SRR4302542.2707819/94‑1 (MQ=60)
      TCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATC                                                                                           >  SRR4302542.2841466/1‑94 (MQ=60)
      TCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATC                                                                                           <  SRR4302542.2283454/94‑1 (MQ=60)
      TCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGggatc                                                                                          >  SRR4302542.3010384/1‑89 (MQ=60)
       CGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCG                                                                                          <  SRR4302542.2613592/94‑1 (MQ=60)
       CGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCG                                                                                          <  SRR4302542.2230059/94‑1 (MQ=60)
       CGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCG                                                                                          >  SRR4302542.6968275/1‑94 (MQ=60)
       CGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCG                                                                                          >  SRR4302542.7038346/1‑94 (MQ=60)
        GCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGG                                                                                         <  SRR4302542.7590465/94‑1 (MQ=60)
        GCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGG                                                                                         <  SRR4302542.7227897/94‑1 (MQ=60)
        GCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGggatcgg                                                                                        >  SRR4302542.1787306/1‑87 (MQ=60)
          CCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGGATCGGGCA                                                                                      >  SRR4302542.5736785/1‑94 (MQ=60)
           CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCA                                                                                      <  SRR4302542.6892448/94‑1 (MQ=60)
           CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCA                                                                                      >  SRR4302542.1154950/1‑94 (MQ=60)
           CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCA                                                                                      <  SRR4302542.6424048/94‑1 (MQ=60)
           CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCATTTCAAACGGCGG‑GGGTATCGGGCA                                                                                      >  SRR4302542.4793205/1‑94 (MQ=60)
            ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAG                                                                                     >  SRR4302542.6430201/1‑94 (MQ=60)
            ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAG                                                                                     <  SRR4302542.4203070/94‑1 (MQ=60)
            ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAG                                                                                     >  SRR4302542.3567432/1‑94 (MQ=60)
            ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAG                                                                                     >  SRR4302542.3158873/1‑94 (MQ=60)
            ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAG                                                                                     >  SRR4302542.939872/1‑94 (MQ=60)
            ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAG                                                                                     >  SRR4302542.1464974/1‑94 (MQ=60)
              TAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAG                                                                                  >  SRR4302542.3007606/1‑94 (MQ=60)
               AAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCAGGCAGCAG                                                                                  >  SRR4302542.4229694/1‑94 (MQ=60)
               AAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCCACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAG                                                                                  >  SRR4302542.2838369/1‑94 (MQ=60)
                AAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGA                                                                                 >  SRR4302542.2219172/1‑94 (MQ=60)
                AAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGA                                                                                 <  SRR4302542.1063236/94‑1 (MQ=60)
                 AACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAA                                                                                <  SRR4302542.5757628/94‑1 (MQ=60)
                 AACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAAC                                                                               <  SRR4302542.4533791/94‑1 (MQ=60)
                 AACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAAC                                                                               <  SRR4302542.1094217/94‑1 (MQ=60)
                  CCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAAC                                                                               <  SRR4302542.6297038/94‑1 (MQ=60)
                  ACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAAC                                                                               <  SRR4302542.2495883/94‑1 (MQ=60)
                  ACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAAC                                                                               <  SRR4302542.2063573/94‑1 (MQ=60)
                  ACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAAC                                                                               <  SRR4302542.6735735/94‑1 (MQ=60)
                  ACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACG                                                                              <  SRR4302542.93553/94‑1 (MQ=60)
                  ACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACG                                                                              <  SRR4302542.4552217/94‑1 (MQ=60)
                   CCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACG                                                                              <  SRR4302542.4580928/94‑1 (MQ=60)
                    CGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGC                                                                             >  SRR4302542.6516492/1‑94 (MQ=60)
                     GCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCC                                                                            >  SRR4302542.2522121/1‑94 (MQ=60)
                      CGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCC                                                                           <  SRR4302542.4171150/94‑1 (MQ=60)
                      CGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCC                                                                           <  SRR4302542.3993018/94‑1 (MQ=60)
                      CGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCC                                                                           >  SRR4302542.96989/1‑94 (MQ=60)
                      CGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCC                                                                           >  SRR4302542.6853008/1‑94 (MQ=60)
                      CGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCC                                                                           >  SRR4302542.943204/1‑94 (MQ=60)
                       GATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCG                                                                          >  SRR4302542.560417/1‑94 (MQ=60)
                        ATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTC                                                                        <  SRR4302542.3770781/94‑1 (MQ=60)
                         TAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTC                                                                        <  SRR4302542.6589644/94‑1 (MQ=60)
                          AATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCA                                                                       <  SRR4302542.5754105/94‑1 (MQ=60)
                          AATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAG                                                                      <  SRR4302542.2057016/94‑1 (MQ=60)
                           ATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAG                                                                      <  SRR4302542.4291232/94‑1 (MQ=60)
                             CAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTT                                                                    <  SRR4302542.1665023/94‑1 (MQ=60)
                             CAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTC                                                                   >  SRR4302542.1015053/1‑94 (MQ=60)
                              AAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTC                                                                   >  SRR4302542.6901211/1‑94 (MQ=60)
                                AGACCGCCGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCAT                                                                 <  SRR4302542.6831312/94‑1 (MQ=60)
                                AGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCAT                                                                 <  SRR4302542.4387937/94‑1 (MQ=60)
                                  ACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAG                                                               <  SRR4302542.3627319/94‑1 (MQ=60)
                                  ACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAG                                                               >  SRR4302542.4253936/1‑94 (MQ=60)
                                  ACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGA                                                              >  SRR4302542.1913749/1‑94 (MQ=60)
                                   CCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGA                                                              >  SRR4302542.1310583/1‑94 (MQ=60)
                                   CCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGA                                                              >  SRR4302542.5252057/1‑94 (MQ=60)
                                    CGACGTTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAG                                                             <  SRR4302542.2554957/94‑1 (MQ=60)
                                    CGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAG                                                             <  SRR4302542.6937369/94‑1 (MQ=60)
                                    CGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAG                                                             >  SRR4302542.2202780/1‑94 (MQ=60)
                                    CGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAG                                                             >  SRR4302542.4135750/1‑94 (MQ=60)
                                    CGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGGCCGTTCATAAAG                                                             >  SRR4302542.1472566/1‑94 (MQ=60)
                                     GACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGA                                                            >  SRR4302542.4640556/1‑94 (MQ=60)
                                     GACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGGAGCAGAAAGCCCGTCAGTTCATAGAGGT                                                           >  SRR4302542.4889316/1‑94 (MQ=60)
                                       CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATC                                                          <  SRR4302542.4315280/94‑1 (MQ=60)
                                       CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATC                                                          >  SRR4302542.5950936/1‑94 (MQ=60)
                                       CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATC                                                          >  SRR4302542.1320776/1‑94 (MQ=60)
                                       CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCA                                                         >  SRR4302542.5620629/1‑94 (MQ=60)
                                       CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCA                                                         >  SRR4302542.5240926/1‑94 (MQ=60)
                                        GATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCA                                                         <  SRR4302542.5765637/94‑1 (MQ=60)
                                        GATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCA                                                         >  SRR4302542.3790816/1‑94 (MQ=60)
                                         ATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAC                                                        >  SRR4302542.2403066/1‑94 (MQ=60)
                                         ATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAC                                                        >  SRR4302542.4947072/1‑94 (MQ=60)
                                         ATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAC                                                        >  SRR4302542.4947071/1‑94 (MQ=60)
                                         ATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACC                                                       <  SRR4302542.6006039/94‑1 (MQ=60)
                                          TTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACC                                                       >  SRR4302542.7188237/1‑94 (MQ=60)
                                           TTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCA                                                      <  SRR4302542.7400984/94‑1 (MQ=60)
                                           TTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAAAGCCCGTCAGTTCATAGAGATCACCC                                                      >  SRR4302542.4314901/1‑94 (MQ=60)
                                           TTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCTCGTCAGTTCATAGAGATCACCC                                                      >  SRR4302542.4659604/1‑94 (MQ=60)
                                            TTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCA                                                     >  SRR4302542.7093550/1‑94 (MQ=60)
                                             TTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAG                                                    <  SRR4302542.3665022/94‑1 (MQ=60)
                                             TTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAG                                                    <  SRR4302542.6526394/94‑1 (MQ=60)
                                             TTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAG                                                    >  SRR4302542.2981386/1‑94 (MQ=60)
                                               CAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGTCCGTCAGTTCATAGAGATCACCCAGTG                                                  >  SRR4302542.6837739/1‑94 (MQ=60)
                                                AGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGA                                                 >  SRR4302542.6597682/1‑94 (MQ=60)
                                                AGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGA                                                 >  SRR4302542.7451909/1‑94 (MQ=60)
                                                 GTGTCGATTTTCGCTACCAGCCGGCCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAA                                                <  SRR4302542.4971086/94‑1 (MQ=60)
                                                 GTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAA                                                >  SRR4302542.498924/1‑94 (MQ=60)
                                                  TGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAAT                                               <  SRR4302542.6509556/94‑1 (MQ=60)
                                                  TGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGGAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAAT                                               >  SRR4302542.5403763/1‑94 (MQ=60)
                                                   GTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATC                                              >  SRR4302542.4506847/1‑94 (MQ=60)
                                                    TCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCG                                             <  SRR4302542.1938556/94‑1 (MQ=60)
                                                     CGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGC                                            >  SRR4302542.6431348/1‑94 (MQ=60)
                                                      GATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCC                                           >  SRR4302542.3274977/1‑94 (MQ=60)
                                                       ATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCTCGTCAGTTCATAGAGATCACCCAGTGAATCGCCA                                          >  SRR4302542.2742968/1‑94 (MQ=60)
                                                       ATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCA                                          >  SRR4302542.6244615/1‑94 (MQ=60)
                                                       ATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAG                                         <  SRR4302542.43624/94‑1 (MQ=60)
                                                       ATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAG                                         >  SRR4302542.2212272/1‑94 (MQ=60)
                                                        TTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAG                                         >  SRR4302542.3612948/1‑94 (MQ=60)
                                                          TTCGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGGAGCAGAACGCCCGCCCGTTCAAAGAGATGACCCCGGGAATCTCCAGAA                                       >  SRR4302542.343394/1‑94 (MQ=46)
                                                            CGCTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAA                                     >  SRR4302542.3565368/1‑94 (MQ=60)
                                                            CGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAT                                    <  SRR4302542.7140704/94‑1 (MQ=60)
                                                              CTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATT                                   <  SRR4302542.2469146/94‑1 (MQ=60)
                                                              CTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATT                                   >  SRR4302542.3723570/1‑94 (MQ=60)
                                                              CTACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATT                                   <  SRR4302542.5632995/94‑1 (MQ=60)
                                                              CTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAACATTT                                  <  SRR4302542.7039287/94‑1 (MQ=60)
                                                              CTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTT                                  <  SRR4302542.189616/94‑1 (MQ=60)
                                                               TACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAAAAATCACCCAGTGAATCGCCAGCAAATTT                                  >  SRR4302542.3776907/1‑94 (MQ=60)
                                                                CCCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAA                                <  SRR4302542.3773396/94‑1 (MQ=60)
                                                                ACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTA                                 <  SRR4302542.3417329/94‑1 (MQ=60)
                                                                ACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTA                                 >  SRR4302542.2110632/1‑94 (MQ=60)
                                                                ACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTA                                 >  SRR4302542.4449516/1‑94 (MQ=60)
                                                                ACCAGCCGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTA                                 >  SRR4302542.3006649/1‑94 (MQ=60)
                                                                  CAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCTCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAG                               <  SRR4302542.3774934/94‑1 (MQ=60)
                                                                  CAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAG                               <  SRR4302542.827821/94‑1 (MQ=60)
                                                                  CAGCCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAG                               <  SRR4302542.6091248/94‑1 (MQ=60)
                                                                     CCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCG                            <  SRR4302542.6596544/94‑1 (MQ=60)
                                                                     CCGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCG                            <  SRR4302542.2118487/94‑1 (MQ=60)
                                                                     CCGACCATCCGTTTCAAACGGC‑GTGGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCG                            <  SRR4302542.6414882/94‑1 (MQ=60)
                                                                      CGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGGCGCAGAACCCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGT                           >  SRR4302542.3577247/1‑94 (MQ=60)
                                                                      CGACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGT                           <  SRR4302542.552387/94‑1 (MQ=60)
                                                                      CGACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGT                           >  SRR4302542.2041165/1‑94 (MQ=60)
                                                                       GACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTA                          >  SRR4302542.1881301/1‑94 (MQ=60)
                                                                       GACCATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAATTAAGCCGTA                          >  SRR4302542.5798548/1‑94 (MQ=60)
                                                                        ACCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAA                         >  SRR4302542.4291895/1‑94 (MQ=60)
                                                                         CCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAA                        >  SRR4302542.4923857/1‑94 (MQ=60)
                                                                         CCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAA                        <  SRR4302542.7601768/94‑1 (MQ=60)
                                                                         CCATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGACGTAAA                        >  SRR4302542.6062980/1‑94 (MQ=60)
                                                                         CCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAT                       >  SRR4302542.4295459/1‑94 (MQ=60)
                                                                          CATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCTCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAT                       >  SRR4302542.333774/1‑94 (MQ=60)
                                                                           ATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATC                      >  SRR4302542.286899/1‑94 (MQ=60)
                                                                           ATCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATC                      >  SRR4302542.5991426/1‑94 (MQ=60)
                                                                           ATCCGTTTCAAACGGCGG‑GGGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATC                      >  SRR4302542.7078875/1‑94 (MQ=60)
                                                                           ATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCG                     <  SRR4302542.5162458/94‑1 (MQ=60)
                                                                            TCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCG                     <  SRR4302542.850812/94‑1 (MQ=60)
                                                                            TCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCG                     <  SRR4302542.4605213/94‑1 (MQ=60)
                                                                            TCCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCG                     <  SRR4302542.3696716/94‑1 (MQ=60)
                                                                             CCGTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGA                    <  SRR4302542.4176679/94‑1 (MQ=60)
                                                                               GTTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACA                  <  SRR4302542.2563687/94‑1 (MQ=60)
                                                                               GTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGCCAC                 >  SRR4302542.4854527/1‑94 (MQ=60)
                                                                                TTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACAC                 <  SRR4302542.1916023/94‑1 (MQ=60)
                                                                                TTTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACAC                 <  SRR4302542.5095904/94‑1 (MQ=60)
                                                                                 TTCAAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACC                <  SRR4302542.935254/94‑1 (MQ=60)
                                                                                 TTCAAACGGCGG‑GGGGACCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACC                >  SRR4302542.4866948/1‑94 (MQ=60)
                                                                                    AAACGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCC             >  SRR4302542.2333280/1‑94 (MQ=60)
                                                                                       CGGCGG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCAT          >  SRR4302542.6781702/1‑94 (MQ=60)
                                                                                          cgG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTT       >  SRR4302542.2203737/3‑94 (MQ=60)
                                                                                          cgG‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTT       <  SRR4302542.4272218/92‑1 (MQ=60)
                                                                                          G‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTC      <  SRR4302542.6501657/94‑1 (MQ=60)
                                                                                          G‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTC      >  SRR4302542.6048950/1‑94 (MQ=60)
                                                                                            G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCA     <  SRR4302542.3915926/94‑1 (MQ=60)
                                                                                            G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCA     <  SRR4302542.170827/94‑1 (MQ=60)
                                                                                            G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCA     <  SRR4302542.549487/94‑1 (MQ=60)
                                                                                              GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCAT    <  SRR4302542.5123232/94‑1 (MQ=60)
                                                                                              GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCAT    <  SRR4302542.4739114/94‑1 (MQ=60)
                                                                                              GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCAT    >  SRR4302542.6686695/1‑94 (MQ=60)
                                                                                               GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATT   <  SRR4302542.5185023/94‑1 (MQ=60)
                                                                                               GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATT   >  SRR4302542.5221920/1‑94 (MQ=60)
                                                                                                GTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  <  SRR4302542.4922815/94‑1 (MQ=60)
                                                                                                GTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  >  SRR4302542.4325173/1‑94 (MQ=60)
                                                                                                GTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  >  SRR4302542.5607810/1‑94 (MQ=60)
                                                                                                |                                                                                             
ACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑G‑GGGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  >  NC_000913/3674982‑3675169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑