Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,751,162	T→C	S190G (AGC→GGC)	yiaV ←	putative membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,751,162	0	T	C	81.9%	636.4 / 143.1	304	S190G (AGC→GGC)	yiaV	putative membrane protein
Reads supporting (aligned to +/- strand): ref base T (30/25); new base C (126/123); total (156/148)
Fisher's exact test for biased strand distribution p-value = 6.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.98e-01

Only 100 of 307 total aligned reads displayed.

TCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTG  >  NC_000913/3751072‑3751251

tCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGccct                                                                                         >  2:559542/1‑93 (MQ=255)

 cTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTg                                                                                        <  2:1785971/93‑1 (MQ=255)

  tGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTgg                                                                                       >  2:3518456/1‑93 (MQ=255)

  tGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTgg                                                                                       <  1:6135137/93‑1 (MQ=255)

   gCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGa                                                                                      <  1:5000062/93‑1 (MQ=255)

     tCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATc                                                                                    <  1:1140422/93‑1 (MQ=255)

     tCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATc                                                                                    <  1:3985249/93‑1 (MQ=255)

      cAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCt                                                                                   >  1:881663/1‑93 (MQ=255)

      cAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCt                                                                                   >  2:7240464/1‑93 (MQ=255)

         ggTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGtt                                                                                >  2:551327/1‑93 (MQ=255)

           ttATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGtttt                                                                              >  2:1595192/1‑93 (MQ=255)

             atatTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTg                                                                            >  2:83012/1‑93 (MQ=255)

             atatTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTg                                                                            >  2:6149214/1‑93 (MQ=255)

              tatTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGt                                                                           >  1:6730224/1‑93 (MQ=255)

              tatTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGt                                                                           <  1:6542325/93‑1 (MQ=255)

               atTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGtt                                                                          >  2:6960038/1‑93 (MQ=255)

                ttttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTc                                                                         <  2:3798887/93‑1 (MQ=255)

                ttttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTc                                                                         <  1:2584424/93‑1 (MQ=255)

                ttttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTc                                                                         >  2:4574542/1‑93 (MQ=255)

                ttttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTc                                                                         <  2:1000915/93‑1 (MQ=255)

                ttttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTc                                                                         <  1:7487845/93‑1 (MQ=255)

                ttttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTc                                                                         <  1:7423798/93‑1 (MQ=255)

                ttttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTc                                                                         <  1:6023481/93‑1 (MQ=255)

                ttttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTc                                                                         >  1:4363986/1‑93 (MQ=255)

                 tttGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTcc                                                                        <  1:2380737/93‑1 (MQ=255)

                    gCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTccgcc                                                                     >  1:325359/1‑93 (MQ=255)

                      ttCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTccgccgc                                                                   >  1:1906977/1‑93 (MQ=255)

                       tCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTccgccgcc                                                                  <  1:7350429/93‑1 (MQ=255)

                       tCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTccgccgcc                                                                  >  2:6431628/1‑93 (MQ=255)

                       tCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTccgccgcc                                                                  <  1:5762697/93‑1 (MQ=255)

                         cgcgAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGa                                                                <  1:4502992/93‑1 (MQ=255)

                           cgAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATg                                                              >  2:3456428/1‑93 (MQ=255)

                           cgAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATg                                                              <  2:3888286/93‑1 (MQ=255)

                            gAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGa                                                             <  1:3580984/93‑1 (MQ=255)

                            gAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGa                                                             >  2:662589/1‑93 (MQ=255)

                             aGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGAc                                                            <  2:6122094/93‑1 (MQ=255)

                             aGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGAc                                                            >  1:6713127/1‑93 (MQ=255)

                              gCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACt                                                           >  2:6857415/1‑93 (MQ=255)

                              gCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACt                                                           >  2:1207567/1‑93 (MQ=255)

                               cTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACtt                                                          <  2:4236772/93‑1 (MQ=255)

                                tgtgCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTc                                                         >  1:3156949/1‑93 (MQ=255)

                                 gtgCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCa                                                        <  2:5191840/93‑1 (MQ=255)

                                  tgCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCAc                                                       >  1:3130104/1‑93 (MQ=255)

                                  tgCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCAc                                                       <  2:6814819/93‑1 (MQ=255)

                                  tgCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCAc                                                       <  1:2102657/93‑1 (MQ=255)

                                   gCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACg                                                      <  2:2385436/93‑1 (MQ=255)

                                    cTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACgg                                                     <  2:1937409/93‑1 (MQ=255)

                                     tttCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGa                                                    >  1:2492793/1‑93 (MQ=255)

                                     tttCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGa                                                    <  2:4089610/93‑1 (MQ=255)

                                      ttCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAg                                                   >  2:5922415/1‑93 (MQ=255)

                                         aGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCt                                                >  2:1903001/1‑93 (MQ=255)

                                            cTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTcc                                             >  2:5744774/1‑93 (MQ=255)

                                             tGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCt                                            >  1:5404799/1‑93 (MQ=255)

                                             tGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCt                                            >  2:5066807/1‑93 (MQ=255)

                                              ggCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTg                                           >  2:3318820/1‑93 (MQ=255)

                                              ggCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTg                                           <  1:3479524/93‑1 (MQ=255)

                                              ggCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTg                                           >  1:7168687/1‑93 (MQ=255)

                                              ggCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTg                                           >  1:1078889/1‑93 (MQ=255)

                                              ggCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTg                                           <  1:1323178/93‑1 (MQ=255)

                                                cGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTgcg                                         >  2:3769673/1‑93 (MQ=255)

                                                 gATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTgcgc                                        >  2:6596918/1‑93 (MQ=255)

                                                   tttGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCa                                      >  1:5606187/1‑93 (MQ=255)

                                                   tttGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCa                                      <  1:7127793/93‑1 (MQ=255)

                                                    ttGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAg                                     <  2:3085321/93‑1 (MQ=255)

                                                     tGAGAATGTTCACCCAACCCCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGa                                    <  1:1462688/93‑1 (MQ=255)

                                                       agaATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGTATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATa                                  >  1:6224703/1‑93 (MQ=255)

                                                       agaATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATa                                  >  2:6705794/1‑93 (MQ=255)

                                                        gaATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATaa                                 >  1:3340015/1‑93 (MQ=255)

                                                         aaTGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAAt                                <  1:692779/93‑1 (MQ=255)

                                                          aTGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAAtt                               <  1:1192938/93‑1 (MQ=255)

                                                           tGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAAttt                              <  2:5270640/93‑1 (MQ=255)

                                                            gTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAAtttt                             >  2:4220005/1‑93 (MQ=255)

                                                              tCACCCACCACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGc                           <  1:5467779/93‑1 (MQ=255)

                                                              tCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGc                           <  1:295696/93‑1 (MQ=255)

                                                              tCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGc                           <  2:3073843/93‑1 (MQ=255)

                                                              tCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGc                           <  1:3797311/93‑1 (MQ=255)

                                                                 cccAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCcgc                        >  2:6324990/1‑93 (MQ=255)

                                                                 cccAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCcgc                        >  1:5107077/1‑93 (MQ=255)

                                                                  ccAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCcgcg                       >  2:3994203/1‑93 (MQ=255)

                                                                   cAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCgcgc                      >  2:2587660/1‑93 (MQ=255)

                                                                    aaCACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGcc                     >  1:1832021/1‑93 (MQ=255)

                                                                    aaCACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGcc                     >  1:1594719/1‑93 (MQ=255)

                                                                       acCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCcaca                  >  2:2281900/1‑93 (MQ=255)

                                                                       acCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCcaca                  <  1:3889004/93‑1 (MQ=255)

                                                                         cAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATc                <  1:2700250/93‑1 (MQ=255)

                                                                           ggCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGa              >  1:5052171/1‑93 (MQ=255)

                                                                            gCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGat             <  1:665580/93‑1 (MQ=255)

                                                                            gCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGat             <  2:4705334/93‑1 (MQ=255)

                                                                              tATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGatat           <  2:5721820/93‑1 (MQ=255)

                                                                              tATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGatat           >  2:2152084/1‑93 (MQ=255)

                                                                               aTCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATc          >  1:5438302/1‑93 (MQ=255)

                                                                                 ccAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATcgc        <  2:4300769/93‑1 (MQ=255)

                                                                                  cAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATcgcg       >  2:1418585/1‑93 (MQ=255)

                                                                                  cAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATcgcg       >  1:4875548/1‑93 (MQ=255)

                                                                                   aGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGt      <  1:2246692/93‑1 (MQ=255)

                                                                                   aGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGt      <  1:5693757/93‑1 (MQ=255)

                                                                                   aGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGt      <  1:2844259/93‑1 (MQ=255)

                                                                                    gCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGtt     >  2:2773406/1‑93 (MQ=255)

                                                                                     cTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTc    <  1:474330/93‑1 (MQ=255)

                                                                                      tGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGACAATTTTGCCGCGCCACATCGATATCGCGTTCt   >  1:2068446/1‑93 (MQ=255)

TCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTG  >  NC_000913/3751072‑3751251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGTCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTGAAAA  >  NC_000913/3751069‑3751255

TCGTCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCC                                                                                               >  SRR4302542.3714421/1‑94 (MQ=60)

 CGTCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCC                                                                                              <  SRR4302542.1335785/94‑1 (MQ=60)

  GTCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCT                                                                                             >  SRR4302542.7461949/1‑94 (MQ=60)

  GTCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCT                                                                                             <  SRR4302542.5732364/94‑1 (MQ=60)

    CTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGG                                                                                           >  SRR4302542.7395235/1‑94 (MQ=60)

    CTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGG                                                                                           >  SRR4302542.5809785/1‑94 (MQ=60)

     TGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGA                                                                                          <  SRR4302542.6194495/94‑1 (MQ=60)

     TGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGA                                                                                          <  SRR4302542.7200314/94‑1 (MQ=60)

     TGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGA                                                                                          >  SRR4302542.3579367/1‑94 (MQ=60)

      GCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGAT                                                                                         >  SRR4302542.6230757/1‑94 (MQ=60)

      GCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGAT                                                                                         <  SRR4302542.5048635/94‑1 (MQ=60)

       CTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATC                                                                                        >  SRR4302542.4001756/1‑94 (MQ=60)

       CTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATC                                                                                        >  SRR4302542.6348401/1‑94 (MQ=60)

        TCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCT                                                                                       >  SRR4302542.889279/1‑94 (MQ=60)

        TCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCT                                                                                       <  SRR4302542.4024564/94‑1 (MQ=60)

        TCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCT                                                                                       <  SRR4302542.1150184/94‑1 (MQ=60)

         CAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTG                                                                                      <  SRR4302542.4329135/94‑1 (MQ=60)

         CAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTG                                                                                      >  SRR4302542.486248/1‑94 (MQ=60)

          AAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGT                                                                                     >  SRR4302542.1317960/1‑94 (MQ=60)

             GTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTT                                                                                  >  SRR4302542.5082034/1‑94 (MQ=60)

             GTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTT                                                                                  >  SRR4302542.1611841/1‑94 (MQ=60)

             GTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTT                                                                                  <  SRR4302542.7115538/94‑1 (MQ=60)

             GTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTT                                                                                  >  SRR4302542.5674885/1‑94 (MQ=60)

              TTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTT                                                                                 <  SRR4302542.3634543/94‑1 (MQ=60)

                ATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGT                                                                               >  SRR4302542.6796474/1‑94 (MQ=60)

                 TATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTT                                                                              <  SRR4302542.6606834/94‑1 (MQ=60)

                 TATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTT                                                                              >  SRR4302542.5715565/1‑94 (MQ=60)

                  ATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTC                                                                             >  SRR4302542.4406832/1‑94 (MQ=60)

                   TTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCC                                                                            <  SRR4302542.1390996/94‑1 (MQ=60)

                   TTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCC                                                                            <  SRR4302542.2609459/94‑1 (MQ=60)

                   TTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCC                                                                            <  SRR4302542.694095/94‑1 (MQ=60)

                   TTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCC                                                                            <  SRR4302542.6081809/94‑1 (MQ=60)

                   TTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCC                                                                            <  SRR4302542.7496441/94‑1 (MQ=60)

                   TTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCC                                                                            <  SRR4302542.7561289/94‑1 (MQ=60)

                    TTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCG                                                                           <  SRR4302542.1522057/94‑1 (MQ=60)

                    TTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCG                                                                           <  SRR4302542.2402419/94‑1 (MQ=60)

                      TGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCC                                                                         <  SRR4302542.6252633/94‑1 (MQ=60)

                      TGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCC                                                                         >  SRR4302542.2731748/1‑94 (MQ=60)

                      TGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCC                                                                         >  SRR4302542.328181/1‑94 (MQ=60)

                       GCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCG                                                                        >  SRR4302542.4557945/1‑94 (MQ=60)

                        CTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGC                                                                       >  SRR4302542.310754/1‑94 (MQ=60)

                        CTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGC                                                                       <  SRR4302542.1129752/94‑1 (MQ=60)

                        CTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGC                                                                       >  SRR4302542.2517255/1‑94 (MQ=60)

                        CTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGC                                                                       <  SRR4302542.7151576/94‑1 (MQ=60)

                        CTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGC                                                                       >  SRR4302542.5641207/1‑94 (MQ=60)

                        CTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGC                                                                       >  SRR4302542.1923453/1‑94 (MQ=60)

                          TCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCG                                                                     <  SRR4302542.7422411/94‑1 (MQ=60)

                          TCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCG                                                                     <  SRR4302542.5818629/94‑1 (MQ=60)

                            CGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGAT                                                                   <  SRR4302542.3922568/94‑1 (MQ=60)

                            CGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGAT                                                                   <  SRR4302542.4547143/94‑1 (MQ=60)

                            CGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGAT                                                                   <  SRR4302542.2154936/94‑1 (MQ=60)

                             GCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTGACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATG                                                                  >  SRR4302542.2314975/1‑94 (MQ=60)

                             GCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATG                                                                  >  SRR4302542.2314974/1‑94 (MQ=60)

                              CGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCCCCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGA                                                                 <  SRR4302542.2525413/94‑1 (MQ=60)

                               GAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGAC                                                                <  SRR4302542.5091294/94‑1 (MQ=60)

                               GAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGAC                                                                >  SRR4302542.6779253/1‑94 (MQ=60)

                               GAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGAC                                                                <  SRR4302542.3614396/94‑1 (MQ=60)

                               GAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGAC                                                                >  SRR4302542.7541931/1‑94 (MQ=60)

                                AGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACT                                                               <  SRR4302542.905539/94‑1 (MQ=60)

                                AGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACT                                                               >  SRR4302542.6737292/1‑94 (MQ=60)

                                AGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACT                                                               >  SRR4302542.6780037/1‑94 (MQ=60)

                                AGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACT                                                               <  SRR4302542.2763225/94‑1 (MQ=60)

                                 GCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTT                                                              >  SRR4302542.3531409/1‑94 (MQ=60)

                                 GCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTT                                                              <  SRR4302542.1857625/94‑1 (MQ=60)

                                  CTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTC                                                             >  SRR4302542.3351850/1‑94 (MQ=60)

                                  CTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTC                                                             >  SRR4302542.3186923/1‑94 (MQ=60)

                                  CTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTC                                                             >  SRR4302542.666412/1‑94 (MQ=60)

                                   TGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCA                                                            >  SRR4302542.6511836/1‑94 (MQ=60)

                                   TGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCA                                                            >  SRR4302542.6879711/1‑94 (MQ=60)

                                    GTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCAC                                                           >  SRR4302542.5153151/1‑94 (MQ=60)

                                    GTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCAC                                                           >  SRR4302542.3159868/1‑94 (MQ=60)

                                     TGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACG                                                          <  SRR4302542.2120805/94‑1 (MQ=60)

                                      GCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGG                                                         <  SRR4302542.6187072/94‑1 (MQ=60)

                                       CTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGA                                                        >  SRR4302542.2516975/1‑94 (MQ=60)

                                        TTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAG                                                       >  SRR4302542.5477651/1‑94 (MQ=60)

                                        TTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAG                                                       <  SRR4302542.116513/94‑1 (MQ=60)

                                         TTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGG                                                      <  SRR4302542.339905/94‑1 (MQ=60)

                                           CAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCT                                                    <  SRR4302542.6104810/94‑1 (MQ=60)

                                           CAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCT                                                    <  SRR4302542.4893782/94‑1 (MQ=60)

                                           CAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCT                                                    >  SRR4302542.3174913/1‑94 (MQ=60)

                                            AGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTT                                                   >  SRR4302542.4002513/1‑94 (MQ=60)

                                            AGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTT                                                   <  SRR4302542.5914757/94‑1 (MQ=60)

                                              GCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCC                                                 <  SRR4302542.761760/94‑1 (MQ=60)

                                               CTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCT                                                <  SRR4302542.1950834/94‑1 (MQ=60)

                                               CTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCT                                                >  SRR4302542.5457303/1‑94 (MQ=60)

                                               CTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCT                                                >  SRR4302542.7504808/1‑94 (MQ=60)

                                               CTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCT                                                <  SRR4302542.4489878/94‑1 (MQ=60)

                                                TGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTG                                               >  SRR4302542.1088154/1‑94 (MQ=60)

                                                TGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTG                                               >  SRR4302542.7239002/1‑94 (MQ=60)

                                                TGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTG                                               >  SRR4302542.2441489/1‑94 (MQ=60)

                                                TGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTG                                               <  SRR4302542.6795361/94‑1 (MQ=60)

                                                 GGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGC                                              >  SRR4302542.5471515/1‑94 (MQ=60)

                                                 GGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGC                                              <  SRR4302542.1334569/94‑1 (MQ=60)

                                                 GGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGC                                              <  SRR4302542.3512087/94‑1 (MQ=60)

                                                  GCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCG                                             <  SRR4302542.2938210/94‑1 (MQ=60)

                                                   CGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGC                                            >  SRR4302542.4966614/1‑94 (MQ=60)

                                                    GATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCC                                           >  SRR4302542.5024271/1‑94 (MQ=60)

                                                    GATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCC                                           >  SRR4302542.7477806/1‑94 (MQ=60)

                                                     ATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCA                                          >  SRR4302542.5660652/1‑94 (MQ=60)

                                                     ATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCA                                          <  SRR4302542.1495547/94‑1 (MQ=60)

                                                      TTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAG                                         <  SRR4302542.7197749/94‑1 (MQ=60)

                                                      TTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAG                                         <  SRR4302542.2112450/94‑1 (MQ=60)

                                                        TGAGAATGTTCACCCAACCCCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGAT                                       <  SRR4302542.1475314/94‑1 (MQ=60)

                                                        TGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGAT                                       <  SRR4302542.1854208/94‑1 (MQ=60)

                                                        TGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGAT                                       <  SRR4302542.1324656/94‑1 (MQ=60)

                                                        TGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGAT                                       <  SRR4302542.3840676/94‑1 (MQ=60)

                                                         GAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGTATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATA                                      >  SRR4302542.6286004/1‑94 (MQ=60)

                                                          AGAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAA                                     >  SRR4302542.3371452/1‑94 (MQ=60)

                                                           GAATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAAT                                    >  SRR4302542.4810693/1‑94 (MQ=60)

                                                            AATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATT                                   >  SRR4302542.6657814/1‑94 (MQ=60)

                                                            AATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATT                                   <  SRR4302542.698768/94‑1 (MQ=60)

                                                            AATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATT                                   <  SRR4302542.3194509/94‑1 (MQ=60)

                                                             ATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTT                                  <  SRR4302542.1203209/94‑1 (MQ=60)

                                                             ATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTT                                  <  SRR4302542.3641786/94‑1 (MQ=60)

                                                             ATGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTT                                  >  SRR4302542.7224546/1‑94 (MQ=60)

                                                              TGTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTT                                 <  SRR4302542.5263842/94‑1 (MQ=60)

                                                               GTTCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTG                                >  SRR4302542.314519/1‑94 (MQ=60)

                                                                 TCACCCACCACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCC                              <  SRR4302542.5520891/94‑1 (MQ=60)

                                                                 TCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCC                              <  SRR4302542.298282/94‑1 (MQ=60)

                                                                 TCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCC                              <  SRR4302542.5507219/94‑1 (MQ=60)

                                                                 TCACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCC                              <  SRR4302542.3834903/94‑1 (MQ=60)

                                                                  CACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCG                             <  SRR4302542.2889437/94‑1 (MQ=60)

                                                                   ACCCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGC                            >  SRR4302542.5156686/1‑94 (MQ=60)

                                                                     CCAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGC                          >  SRR4302542.1463462/1‑94 (MQ=60)

                                                                      CAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCC                         >  SRR4302542.1847889/1‑94 (MQ=60)

                                                                      CAACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCC                         >  SRR4302542.1608492/1‑94 (MQ=60)

                                                                       AACACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCA                        <  SRR4302542.5758878/94‑1 (MQ=60)

                                                                         CACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACA                      >  SRR4302542.5138739/1‑94 (MQ=60)

                                                                          ACCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACAT                     <  SRR4302542.3927398/94‑1 (MQ=60)

                                                                           CCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATC                    >  SRR4302542.4462719/1‑94 (MQ=60)

                                                                           CCAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATC                    <  SRR4302542.3412299/94‑1 (MQ=60)

                                                                            CAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCG                   >  SRR4302542.6017918/1‑94 (MQ=60)

                                                                            CAGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCG                   <  SRR4302542.2726299/94‑1 (MQ=60)

                                                                             AGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGA                  >  SRR4302542.1174352/1‑94 (MQ=60)

                                                                             AGGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGA                  >  SRR4302542.5101230/1‑94 (MQ=60)

                                                                              GGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGAT                 <  SRR4302542.802822/94‑1 (MQ=60)

                                                                              GGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGAT                 <  SRR4302542.281753/94‑1 (MQ=60)

                                                                              GGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGAT                 >  SRR4302542.4059104/1‑94 (MQ=60)

                                                                              GGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGAT                 <  SRR4302542.6739333/94‑1 (MQ=60)

                                                                              GGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGAT                 <  SRR4302542.6684232/94‑1 (MQ=60)

                                                                              GGCTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGAT                 <  SRR4302542.2670895/94‑1 (MQ=60)

                                                                               GCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATA                <  SRR4302542.671322/94‑1 (MQ=60)

                                                                                CTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATAT               <  SRR4302542.7390082/94‑1 (MQ=60)

                                                                                CTATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATAT               >  SRR4302542.2089272/1‑94 (MQ=60)

                                                                                 TATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATC              >  SRR4302542.5491142/1‑94 (MQ=60)

                                                                                 TATCCAGCTGGCCTTGGTTCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTCCCGCGCCACATCGATATC              <  SRR4302542.329987/94‑1 (MQ=60)

                                                                                 TATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATC              <  SRR4302542.2717093/94‑1 (MQ=60)

                                                                                  ATCCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCG             >  SRR4302542.4768299/1‑94 (MQ=60)

                                                                                    CCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCG           >  SRR4302542.4923001/1‑94 (MQ=60)

                                                                                    CCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCG           >  SRR4302542.3209548/1‑94 (MQ=60)

                                                                                    CCAGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCC‑ATGACTTCACGGAGGCTTCCTGCCCCAGGTAATTTTGCCGgcccccctcgatatcgcgg          >  SRR4302542.1826429/1‑75 (MQ=60)

                                                                                      AGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTT         <  SRR4302542.2266014/94‑1 (MQ=60)

                                                                                      AGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTT         <  SRR4302542.2403076/94‑1 (MQ=60)

                                                                                      AGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTT         <  SRR4302542.2871587/94‑1 (MQ=60)

                                                                                      AGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTT         >  SRR4302542.3164413/1‑94 (MQ=60)

                                                                                      AGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTT         <  SRR4302542.1119168/94‑1 (MQ=60)

                                                                                      AGCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTT         <  SRR4302542.5749040/94‑1 (MQ=60)

                                                                                       GCTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTC        >  SRR4302542.2151426/1‑94 (MQ=60)

                                                                                        CTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCT       <  SRR4302542.478435/94‑1 (MQ=60)

                                                                                        CTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCT       <  SRR4302542.2039148/94‑1 (MQ=60)

                                                                                        CTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCT       <  SRR4302542.936348/94‑1 (MQ=60)

                                                                                        CTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCT       <  SRR4302542.5196982/94‑1 (MQ=60)

                                                                                        CTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCT       <  SRR4302542.5507078/94‑1 (MQ=60)

                                                                                        CTGGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGACAATTTTGCCGCGCCACATCGATATCGCGTTCT       >  SRR4302542.2086329/1‑94 (MQ=60)

                                                                                         TGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTG      >  SRR4302542.5613243/1‑94 (MQ=60)

                                                                                          GGCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTGA     >  SRR4302542.5273342/1‑94 (MQ=60)

                                                                                           GCCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTGAA    <  SRR4302542.6210387/94‑1 (MQ=60)

                                                                                            CCCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTGAAA   >  SRR4302542.2403528/1‑94 (MQ=60)

                                                                                             CCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTGAAAA  >  SRR4302542.7048223/1‑94 (MQ=60)

                                                                                             CCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTGAAAA  >  SRR4302542.4377553/1‑94 (MQ=60)

                                                                                             CCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTGAAAA  <  SRR4302542.1023007/94‑1 (MQ=60)

TCGTCTGCTCAAGGTTATATTTTGCTTCCGCGAGCTGTGCTTTCAGGCTGGCGATTTGAGAATGTTCACCCAACACCAGGCTATCCAGCTGGCTCTGGATCTGTTTTTGTTCCGCCGCCGATGACTTCACGGAGGCTTCCTGCGCCAGATAATTTTGCCGCGCCACATCGATATCGCGTTCTGAAAA  >  NC_000913/3751069‑3751255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`