Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,759,720 |
T→C |
intergenic (‑138/‑90) |
yibF ← / → rhsA |
putative S‑transferase/RhsA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,759,720 | 0 | T | C | 85.6%
| 681.7
/ 106.3
| 285 | intergenic (‑138/‑90) | yibF/rhsA | putative S‑transferase/RhsA |
| Reads supporting (aligned to +/- strand): ref base T (27/14); new base C (126/118); total (153/132) |
| Fisher's exact test for biased strand distribution p-value = 1.27e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.96e-01 |
Only 100 of 288 total aligned reads displayed.
GGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAAT > NC_000913/3759629‑3759811
|
gAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCActct < 2:2045272/93‑1 (MQ=255)
aaaaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGa > 2:2115999/1‑93 (MQ=255)
aaaaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGa < 2:7313220/93‑1 (MQ=255)
aaaaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGa > 1:291474/1‑93 (MQ=255)
aaaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGAt < 1:4116501/93‑1 (MQ=255)
aaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATg > 1:1181101/1‑93 (MQ=255)
aaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATg > 2:5456412/1‑93 (MQ=255)
aaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATg < 2:1934597/93‑1 (MQ=255)
aGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATgg > 1:2668061/1‑93 (MQ=255)
gggCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGa > 2:5683115/1‑93 (MQ=255)
ggCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGat > 1:2899154/1‑93 (MQ=255)
gCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGata < 2:2961060/93‑1 (MQ=255)
gCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGata < 2:2588967/93‑1 (MQ=255)
aGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATAtc < 2:6307812/93‑1 (MQ=255)
aGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATAtc > 1:4932406/1‑93 (MQ=255)
gAAAATGTTGATGGTTTGTTACTTCCAAATAAATTACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATAtct > 1:4628732/1‑93 (MQ=255)
gAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATAtct > 2:5354758/1‑93 (MQ=255)
gAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATAtct > 2:5099714/1‑93 (MQ=255)
aaTGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCAc > 1:2184704/1‑93 (MQ=255)
aTGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACt < 1:3500064/93‑1 (MQ=255)
aTGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACt < 1:4385806/93‑1 (MQ=255)
gTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTc < 1:2497749/93‑1 (MQ=255)
tGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAg < 1:6901474/93‑1 (MQ=255)
gATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAgg > 2:323001/1‑93 (MQ=255)
tGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCt < 1:7157265/93‑1 (MQ=255)
ggTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCtt < 1:1009538/93‑1 (MQ=255)
gTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCttt > 2:4819142/1‑93 (MQ=255)
gTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTta < 2:864520/93‑1 (MQ=255)
ttACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTtat < 1:637153/93‑1 (MQ=255)
tACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTtata > 2:1004912/1‑93 (MQ=255)
tACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTCCAGGCTTTCTtata < 2:7491001/93‑1 (MQ=255)
aCTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATaa > 1:1122324/1‑93 (MQ=255)
cTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATaaa > 2:6629968/1‑93 (MQ=255)
ttCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAAt < 1:5310447/93‑1 (MQ=255)
tCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATc < 1:4757356/93‑1 (MQ=255)
ccAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCt < 1:4192586/93‑1 (MQ=255)
taaatCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAgg < 2:3617579/93‑1 (MQ=255)
taaatCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATATGTAgg > 1:861783/1‑93 (MQ=255)
aaatCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAggg > 1:3456811/1‑93 (MQ=255)
tCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGttt < 2:7212982/93‑1 (MQ=255)
tCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGttt < 1:1387979/93‑1 (MQ=255)
cacaTATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTc > 2:389252/1‑93 (MQ=255)
acaTATTTATCATGGTGATATAAATATTTTCCTAATNNTTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTNNCg > 1:5535483/1‑93 (MQ=255)
atatTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGcc > 2:4554616/1‑93 (MQ=255)
atatTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGcc < 2:5399063/93‑1 (MQ=255)
atatTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGCAGGGTTTCGcc > 1:2762016/1‑93 (MQ=255)
tatTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCt < 1:134010/93‑1 (MQ=255)
atTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTg < 1:3752870/93‑1 (MQ=255)
tttATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGt > 1:145611/1‑93 (MQ=255)
tttATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGt > 1:6948631/1‑93 (MQ=255)
tttATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGt < 2:174188/93‑1 (MQ=255)
tttATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGt > 2:1156617/1‑93 (MQ=255)
ttATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTc < 1:3872568/93‑1 (MQ=255)
ttATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTc < 1:1721822/93‑1 (MQ=255)
tCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTcagc > 1:2086231/1‑93 (MQ=255)
cATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTcagca < 2:6040407/93‑1 (MQ=255)
ggTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGAc > 1:5196523/1‑93 (MQ=255)
ggTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGAc < 1:2623687/93‑1 (MQ=255)
gTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACa > 2:708667/1‑93 (MQ=255)
atatAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAAt < 1:6745063/93‑1 (MQ=255)
tataAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATa < 1:7319338/93‑1 (MQ=255)
tataAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATa > 2:6979624/1‑93 (MQ=255)
tataAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATa < 1:6697912/93‑1 (MQ=255)
taAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATann > 2:3089930/1‑91 (MQ=255)
taAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAc < 1:7352650/93‑1 (MQ=255)
taAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAc > 1:1288840/1‑93 (MQ=255)
taAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAc > 1:5763260/1‑93 (MQ=255)
aaTATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAccc > 2:147108/1‑93 (MQ=255)
aaTATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAccc < 2:5762527/93‑1 (MQ=255)
tatTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGa > 1:95798/1‑93 (MQ=255)
atTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGAt < 2:886103/93‑1 (MQ=255)
atTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGAt < 2:1039990/93‑1 (MQ=255)
ccTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAAc > 1:6235690/1‑93 (MQ=255)
cTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATaaa > 2:774801/1‑90 (MQ=255)
cTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATaaa < 1:774801/90‑1 (MQ=255)
tAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACaa < 1:1783335/93‑1 (MQ=255)
tAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACaa > 1:3287465/1‑93 (MQ=255)
tAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACaa > 2:6114756/1‑93 (MQ=255)
aaTTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAg > 2:2252192/1‑93 (MQ=255)
aaTTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAg < 1:4075404/93‑1 (MQ=255)
aaTTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAg > 1:651500/1‑93 (MQ=255)
attattTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAgg < 2:5959471/93‑1 (MQ=255)
attattTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAgg > 1:4476056/1‑93 (MQ=255)
ttattTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGa > 2:3454665/1‑93 (MQ=255)
ttattTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGa < 2:4295226/93‑1 (MQ=255)
ttattTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGa > 2:1959096/1‑93 (MQ=255)
ttattTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGa < 2:1267936/93‑1 (MQ=255)
ttattTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGa > 2:3724949/1‑93 (MQ=255)
ttattTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGa > 2:2752738/1‑93 (MQ=255)
ttattTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGa < 1:5094936/93‑1 (MQ=255)
tattTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGAt > 2:3847036/1‑93 (MQ=255)
tattTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGAt < 1:4056924/93‑1 (MQ=255)
attTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATg > 1:5898210/1‑93 (MQ=255)
attTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATg > 2:1363308/1‑93 (MQ=255)
attTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATg > 2:5808996/1‑93 (MQ=255)
tttCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATga > 2:4058013/1‑93 (MQ=255)
tCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATgaga < 2:6424371/93‑1 (MQ=255)
tCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATgaga > 1:2257759/1‑93 (MQ=255)
cACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGaa > 2:7352831/1‑93 (MQ=255)
ctctGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAAt > 2:5155621/1‑93 (MQ=255)
|
GGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAAT > NC_000913/3759629‑3759811
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATG > NC_000913/3759627‑3759812
|
TGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACC < SRR4302542.1043048/94‑1 (MQ=60)
TGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACC > SRR4302542.6533713/1‑94 (MQ=60)
GGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCC < SRR4302542.6243090/94‑1 (MQ=60)
GGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCC < SRR4302542.4281358/94‑1 (MQ=60)
GGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCT < SRR4302542.1900514/94‑1 (MQ=60)
AAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGA > SRR4302542.4181757/1‑94 (MQ=60)
AAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGA > SRR4302542.294018/1‑94 (MQ=60)
AAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATG < SRR4302542.1741606/94‑1 (MQ=60)
AAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATG < SRR4302542.4157060/94‑1 (MQ=60)
AAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATG > SRR4302542.1191297/1‑94 (MQ=60)
AAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGG > SRR4302542.2693809/1‑94 (MQ=60)
AGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGA > SRR4302542.1319964/1‑94 (MQ=60)
AGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGA < SRR4302542.7412713/94‑1 (MQ=60)
GGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGAT > SRR4302542.2926978/1‑94 (MQ=60)
GGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGAT > SRR4302542.5752349/1‑94 (MQ=60)
GGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGAT < SRR4302542.850368/94‑1 (MQ=60)
CAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATC > SRR4302542.4980357/1‑94 (MQ=60)
AGAAAATGTTGATGGTTTGTTACTTCCAAATAAATTACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCT > SRR4302542.4673964/1‑94 (MQ=60)
AGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCT > SRR4302542.4082024/1‑94 (MQ=60)
AAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCA < SRR4302542.5066422/94‑1 (MQ=60)
AAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCAC > SRR4302542.6999153/1‑94 (MQ=60)
AAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCAC > SRR4302542.2203526/1‑94 (MQ=60)
AAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCAC > SRR4302542.7257405/1‑94 (MQ=60)
ATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTT < SRR4302542.3532800/94‑1 (MQ=60)
ATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTT < SRR4302542.4428840/94‑1 (MQ=60)
TGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTC > SRR4302542.1691417/1‑94 (MQ=60)
GTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCA < SRR4302542.2521972/94‑1 (MQ=60)
GTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCA > SRR4302542.7565337/1‑94 (MQ=60)
TTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAG < SRR4302542.4446725/94‑1 (MQ=60)
TTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAG > SRR4302542.1278833/1‑94 (MQ=60)
TGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGG < SRR4302542.3810680/94‑1 (MQ=60)
TGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGG > SRR4302542.3637095/1‑94 (MQ=60)
TGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGG < SRR4302542.6969237/94‑1 (MQ=60)
TGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGG > SRR4302542.7440125/1‑94 (MQ=60)
GATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGC < SRR4302542.4022621/94‑1 (MQ=60)
ATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCT > SRR4302542.4671839/1‑94 (MQ=60)
TGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTT < SRR4302542.7227479/94‑1 (MQ=60)
GGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTT < SRR4302542.1018229/94‑1 (MQ=60)
GGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTT < SRR4302542.5234788/94‑1 (MQ=60)
GGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTT < SRR4302542.5501778/94‑1 (MQ=60)
GTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTC > SRR4302542.3737042/1‑94 (MQ=60)
GTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTC > SRR4302542.901606/1‑94 (MQ=60)
TGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTA < SRR4302542.2205256/94‑1 (MQ=60)
GTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTAT < SRR4302542.1393495/94‑1 (MQ=60)
TTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATA > SRR4302542.7400126/1‑94 (MQ=60)
TTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATA < SRR4302542.642632/94‑1 (MQ=60)
TTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATA > SRR4302542.3808084/1‑94 (MQ=60)
TACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAA > SRR4302542.1131913/1‑94 (MQ=60)
TACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAA < SRR4302542.7227366/94‑1 (MQ=60)
ACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAA > SRR4302542.5567639/1‑94 (MQ=60)
CTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATGTCTCACTTCAGGCTTTCTTATAAAT > SRR4302542.3041147/1‑94 (MQ=60)
CTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAAT > SRR4302542.6725821/1‑94 (MQ=60)
CTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAAT > SRR4302542.649762/1‑94 (MQ=60)
TTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATC < SRR4302542.5362040/94‑1 (MQ=60)
TCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCT < SRR4302542.4803755/94‑1 (MQ=60)
TCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCT < SRR4302542.2317115/94‑1 (MQ=60)
CCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTG > SRR4302542.2902301/1‑94 (MQ=60)
CCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTG < SRR4302542.4233922/94‑1 (MQ=60)
CCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTG > SRR4302542.2722763/1‑94 (MQ=60)
AAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTA > SRR4302542.6444322/1‑94 (MQ=60)
AATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAG > SRR4302542.6990137/1‑94 (MQ=60)
AATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAG < SRR4302542.4345781/94‑1 (MQ=60)
ATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGG < SRR4302542.4254004/94‑1 (MQ=60)
ATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATATGTAGG > SRR4302542.869201/1‑94 (MQ=60)
TAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGG > SRR4302542.3489149/1‑94 (MQ=60)
TAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGG < SRR4302542.4097736/94‑1 (MQ=60)
AAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGT < SRR4302542.1222199/94‑1 (MQ=60)
AAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGT < SRR4302542.6932634/94‑1 (MQ=60)
AAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGT < SRR4302542.3176600/94‑1 (MQ=60)
AAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGT < SRR4302542.3425319/94‑1 (MQ=60)
AATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTT > SRR4302542.5300441/1‑94 (MQ=60)
ATCACATATTTATCATGGTGATATAACTATTCTCGTAATTATTCCAGCGTGAGGGATATCTCCCTTCAGTCTTTCTTATAAATCTGTAGGGTTT > SRR4302542.2845334/1‑94 (MQ=32)
ATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTT > SRR4302542.6423753/1‑94 (MQ=60)
ATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTT > SRR4302542.99600/1‑94 (MQ=60)
ATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGAAGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTT < SRR4302542.4965807/94‑1 (MQ=60)
TCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTC < SRR4302542.1399968/94‑1 (MQ=60)
TCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTC < SRR4302542.4713073/94‑1 (MQ=60)
CACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCG > SRR4302542.143187/1‑94 (MQ=60)
CACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCG > SRR4302542.4785377/1‑94 (MQ=60)
CACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCG < SRR4302542.1671522/94‑1 (MQ=60)
CACATATTTATCATGGTGATATAAATATTTTCCTAATNNTTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTNNCG > SRR4302542.5589295/1‑94 (MQ=60)
ACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGC < SRR4302542.2140968/94‑1 (MQ=60)
CATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCC > SRR4302542.6383193/1‑94 (MQ=60)
CATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGCAGGGTTTCGCC > SRR4302542.2788631/1‑94 (MQ=60)
TATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTG > SRR4302542.2162660/1‑94 (MQ=60)
TATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTG < SRR4302542.135094/94‑1 (MQ=60)
ATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGT > SRR4302542.146833/1‑94 (MQ=60)
ATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGT > SRR4302542.5831913/1‑94 (MQ=60)
ATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGT > SRR4302542.7016909/1‑94 (MQ=60)
ATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGT < SRR4302542.3789998/94‑1 (MQ=60)
ATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGT < SRR4302542.3507901/94‑1 (MQ=60)
ACTTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGT < SRR4302542.3507903/94‑1 (MQ=60)
TTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCA < SRR4302542.3910828/94‑1 (MQ=60)
TTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCA < SRR4302542.6135902/94‑1 (MQ=60)
TTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCA < SRR4302542.1736772/94‑1 (MQ=60)
TTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCA < SRR4302542.2252421/94‑1 (MQ=60)
TTATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCA < SRR4302542.114268/94‑1 (MQ=60)
TATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAG < SRR4302542.2673910/94‑1 (MQ=60)
TATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAG < SRR4302542.6898608/94‑1 (MQ=60)
ATCATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGC > SRR4302542.2104240/1‑94 (MQ=60)
ATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGA > SRR4302542.2536590/1‑94 (MQ=60)
ATGGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGA > SRR4302542.7200153/1‑94 (MQ=60)
TGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGAC > SRR4302542.5247014/1‑94 (MQ=60)
GGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACA > SRR4302542.1324819/1‑94 (MQ=60)
GGTGATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACA < SRR4302542.2649037/94‑1 (MQ=60)
GATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAAT > SRR4302542.4105418/1‑94 (MQ=60)
ATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATA < SRR4302542.6811437/94‑1 (MQ=60)
ATATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATA < SRR4302542.248444/94‑1 (MQ=60)
TATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAA < SRR4302542.7391026/94‑1 (MQ=60)
TATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAA < SRR4302542.6763919/94‑1 (MQ=60)
ATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAC > SRR4302542.3348135/1‑94 (MQ=60)
ATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAC < SRR4302542.485364/94‑1 (MQ=60)
ATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAC > SRR4302542.1299938/1‑94 (MQ=60)
ATAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAAC > SRR4302542.5819200/1‑94 (MQ=60)
TAAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACC < SRR4302542.7424649/94‑1 (MQ=60)
AAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCC > SRR4302542.93131/1‑94 (MQ=60)
AAATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCC < SRR4302542.1099124/94‑1 (MQ=60)
AATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCG > SRR4302542.413254/1‑94 (MQ=60)
ATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGA > SRR4302542.2611699/1‑94 (MQ=60)
ATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGA > SRR4302542.6583862/1‑94 (MQ=60)
ATATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGA > SRR4302542.96611/1‑94 (MQ=60)
TATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGAT > SRR4302542.727235/1‑94 (MQ=60)
TATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGAT < SRR4302542.4628542/94‑1 (MQ=60)
ATTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATA > SRR4302542.5650400/1‑94 (MQ=60)
TTTTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAA > SRR4302542.2933573/1‑94 (MQ=60)
TTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAA < SRR4302542.781493/94‑1 (MQ=60)
TTCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAA > SRR4302542.5856757/1‑94 (MQ=58)
TCCTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAAC > SRR4302542.6297085/1‑94 (MQ=55)
CTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAA > SRR4302542.3318508/1‑94 (MQ=50)
CTAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAA > SRR4302542.4129300/1‑94 (MQ=50)
TAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAG < SRR4302542.1798779/94‑1 (MQ=48)
TAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAG > SRR4302542.5989333/1‑94 (MQ=48)
TAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAG > SRR4302542.657091/1‑94 (MQ=48)
TAATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAG < SRR4302542.2692250/94‑1 (MQ=48)
AATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGG < SRR4302542.4115579/94‑1 (MQ=45)
AATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGG > SRR4302542.4519954/1‑94 (MQ=45)
AATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGG > SRR4302542.146808/1‑94 (MQ=45)
AATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGG < SRR4302542.1171089/94‑1 (MQ=45)
ATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCGGCAGACAAATAACCCGATAAAACAAGGA < SRR4302542.798484/94‑1 (MQ=41)
ATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGA > SRR4302542.6800022/1‑94 (MQ=43)
ATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGA < SRR4302542.2763349/94‑1 (MQ=43)
ATTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGA > SRR4302542.174536/1‑94 (MQ=43)
TTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGAT > SRR4302542.5169331/1‑94 (MQ=40)
TTATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGAT < SRR4302542.5144445/94‑1 (MQ=40)
TATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATG < SRR4302542.4096933/94‑1 (MQ=38)
TATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATG < SRR4302542.1379597/94‑1 (MQ=38)
TATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATG > SRR4302542.5955395/1‑94 (MQ=38)
ATTTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGA > SRR4302542.1912602/1‑94 (MQ=35)
TTCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGA > SRR4302542.2277167/1‑94 (MQ=33)
TCACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAA < SRR4302542.4987645/94‑1 (MQ=33)
CACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAA > SRR4302542.443705/1‑94 (MQ=47)
CACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAA > SRR4302542.6485930/1‑94 (MQ=36)
ACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAAT < SRR4302542.7352980/94‑1 (MQ=38)
ACCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAAT > SRR4302542.1111185/1‑94 (MQ=38)
CCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATG < SRR4302542.3835360/94‑1 (MQ=41)
CCCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATG > SRR4302542.6362552/1‑94 (MQ=41)
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TGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATG > NC_000913/3759627‑3759812
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
