Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,765,234	G→A	G129G (GGG→GGA)	yibJ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,765,234	0	G	A	100.0%	598.1 / NA	175	G129G (GGG→GGA)	yibJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (70/105); total (70/105)

Only 100 of 175 total aligned reads displayed.

CGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC  >  NC_000913/3765184‑3765323

cGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATTCGTTGAATCCg                                                 <  1:6190331/93‑1 (MQ=11)

cGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCg                                                 >  2:5542218/1‑93 (MQ=11)

cGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCg                                                 <  2:3600433/93‑1 (MQ=255)

 gCTATTATGACCCGCTGCTGAGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCgg                                                >  2:3848920/1‑93 (MQ=11)

  cTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGt                                               >  1:6053360/1‑93 (MQ=255)

  cTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGt                                               >  1:7408718/1‑93 (MQ=11)

  cTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGt                                               <  1:1793720/93‑1 (MQ=255)

  cTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGt                                               <  2:3646459/93‑1 (MQ=11)

   tattatGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTc                                              >  1:1841865/1‑93 (MQ=11)

    attatGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCa                                             >  2:4005409/1‑93 (MQ=11)

     ttatGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCAt                                            >  2:6552153/1‑93 (MQ=11)

     ttatGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCAt                                            >  2:5128974/1‑93 (MQ=11)

      tatGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATa                                           >  2:6471833/1‑93 (MQ=14)

      tatGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATa                                           >  1:7123895/1‑93 (MQ=255)

       atGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaa                                          >  1:6107289/1‑93 (MQ=14)

        tGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         <  2:269937/93‑1 (MQ=255)

        tGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         <  2:214392/93‑1 (MQ=255)

        tGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         >  2:3999048/1‑93 (MQ=14)

        tGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         <  2:7332181/93‑1 (MQ=255)

        tGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         >  1:1388918/1‑93 (MQ=14)

        tGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         <  2:63793/93‑1 (MQ=255)

        tGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa                                         <  2:6250145/93‑1 (MQ=255)

         nncccGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt                                        <  2:1692195/91‑1 (MQ=14)

         gACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt                                        <  2:5679361/93‑1 (MQ=255)

          aCCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATg                                       >  1:3678406/1‑93 (MQ=255)

           cccGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGt                                      <  2:4420312/93‑1 (MQ=255)

            ccGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTa                                     >  1:935215/1‑93 (MQ=255)

            ccGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTa                                     <  1:7343578/93‑1 (MQ=255)

            ccGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTa                                     <  1:5225013/93‑1 (MQ=255)

             cGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAg                                    >  1:3105227/1‑93 (MQ=255)

             cGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAg                                    <  2:4850651/93‑1 (MQ=255)

             cGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAg                                    <  1:2975663/93‑1 (MQ=255)

             cGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAg                                    >  2:4101477/1‑93 (MQ=17)

              gctgctGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa                                   >  2:6823404/1‑93 (MQ=255)

              gctgctGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa                                   >  2:2626870/1‑93 (MQ=17)

              gctgctGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa                                   <  1:2259108/93‑1 (MQ=255)

              gctgctGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa                                   >  1:2735532/1‑93 (MQ=17)

              gctgctGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa                                   <  1:6981792/93‑1 (MQ=255)

               ctgctgGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAt                                  >  1:3505997/1‑93 (MQ=255)

               ctgctgGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAt                                  <  1:6125868/93‑1 (MQ=255)

               ctgctgGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAt                                  <  2:447573/93‑1 (MQ=255)

               ctgctgGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAt                                  <  1:117759/93‑1 (MQ=255)

                tGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 <  2:3031367/93‑1 (MQ=255)

                tGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 <  2:611210/93‑1 (MQ=255)

                tGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 >  2:2438878/1‑93 (MQ=17)

                tGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 <  1:5170924/93‑1 (MQ=255)

                tGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 <  2:7413496/93‑1 (MQ=255)

                  ctggggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCg                               <  2:2858003/91‑1 (MQ=255)

                   tggggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGc                              >  1:1897124/2‑93 (MQ=255)

                    ggggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCa                             <  1:2839939/93‑1 (MQ=255)

                    ggggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCa                             >  2:3760681/1‑93 (MQ=255)

                     gggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCaa                            >  2:4485671/1‑93 (MQ=255)

                     gggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCaa                            <  2:3426673/93‑1 (MQ=255)

                     gggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCaa                            >  2:4979699/1‑93 (MQ=255)

                     gggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCaa                            <  1:4626673/93‑1 (MQ=255)

                     gggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCaa                            <  1:1550106/93‑1 (MQ=255)

                      ggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg                           <  1:1813073/93‑1 (MQ=255)

                      ggCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg                           <  1:1367255/93‑1 (MQ=255)

                       gCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAgg                          >  1:3171953/1‑93 (MQ=255)

                       gCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAgg                          <  2:2296140/93‑1 (MQ=255)

                       gCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAgg                          <  2:6295542/93‑1 (MQ=255)

                         ggTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        <  1:4323997/93‑1 (MQ=255)

                         ggTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        <  2:6912823/93‑1 (MQ=255)

                         ggTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        >  1:3726873/1‑93 (MQ=255)

                          gTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGttt                       <  1:2072656/93‑1 (MQ=255)

                          gTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGttt                       >  1:608481/1‑93 (MQ=255)

                            atatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTgg                     <  2:2516070/93‑1 (MQ=255)

                            atatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTgg                     <  2:4680053/93‑1 (MQ=255)

                            atatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTgg                     >  2:5219799/1‑93 (MQ=255)

                             tatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    <  2:6807508/93‑1 (MQ=255)

                             tatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    <  1:679143/93‑1 (MQ=255)

                             tatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    <  1:3038797/93‑1 (MQ=255)

                             tatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    >  1:2554249/1‑93 (MQ=255)

                             tatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    <  2:5937212/93‑1 (MQ=255)

                             tatCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt                    >  1:2476395/1‑93 (MQ=255)

                               tCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTg                  >  2:2179458/1‑93 (MQ=255)

                               tCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTg                  >  1:3110989/1‑93 (MQ=255)

                               tCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTg                  >  2:6104936/1‑93 (MQ=255)

                                cACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGa                 <  1:6711083/93‑1 (MQ=255)

                                 aCTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGat                >  2:5401869/1‑93 (MQ=255)

                                 aCTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGat                >  1:582173/1‑93 (MQ=255)

                                  cTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               <  1:3945288/93‑1 (MQ=255)

                                  cTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               <  1:5645113/93‑1 (MQ=255)

                                  cTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               <  2:3023667/93‑1 (MQ=255)

                                   tCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGatat              >  1:100016/1‑93 (MQ=255)

                                   tCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGatat              <  2:3622777/93‑1 (MQ=255)

                                    cAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGAtata             <  1:161083/93‑1 (MQ=255)

                                       gaaccGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAt          <  2:1461338/90‑1 (MQ=255)

                                       gaaccGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAt          <  1:5034736/90‑1 (MQ=255)

                                       gATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAt          <  1:1265022/93‑1 (MQ=255)

                                         tCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAttt        >  1:5698086/1‑93 (MQ=255)

                                         accGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAttt        >  1:130936/2‑93 (MQ=255)

                                          ccGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTta       <  2:5474919/93‑1 (MQ=255)

                                          ccGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTta       <  1:5041286/93‑1 (MQ=255)

                                           cGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTtat      <  1:7090061/93‑1 (MQ=255)

                                           cGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTtat      <  2:2555712/93‑1 (MQ=255)

                                            gATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTtata     <  1:6550098/93‑1 (MQ=255)

                                            gATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTtata     <  2:1094760/93‑1 (MQ=255)

                                              ttGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAcc   <  1:3292883/93‑1 (MQ=255)

                                               tGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAccc  <  1:5277452/93‑1 (MQ=255)

CGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC  >  NC_000913/3765184‑3765323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCCG  >  NC_000913/3765141‑3765325

GCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGG                                                                                             <  SRR4302542.3711908/94‑1 (MQ=0)

  AGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACT                                                                                           >  SRR4302542.5583061/1‑94 (MQ=0)

  AGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACT                                                                                           >  SRR4302542.643259/1‑94 (MQ=0)

  AGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCT                                                                                           <  SRR4302542.6314479/94‑1 (MQ=0)

  AGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCT                                                                                           <  SRR4302542.2132169/94‑1 (MQ=0)

  AGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCT                                                                                           <  SRR4302542.6885589/94‑1 (MQ=0)

     AGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAA                                                                                        <  SRR4302542.5531426/94‑1 (MQ=0)

      GTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAG                                                                                       <  SRR4302542.5574001/94‑1 (MQ=0)

      GTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAG                                                                                       >  SRR4302542.1688182/1‑94 (MQ=0)

      GTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAG                                                                                       >  SRR4302542.6957371/1‑94 (MQ=0)

       TATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGG                                                                                      >  SRR4302542.6122635/1‑94 (MQ=0)

        ATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGG                                                                                     <  SRR4302542.6987348/94‑1 (MQ=0)

        ATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGG                                                                                     >  SRR4302542.1829126/1‑94 (MQ=0)

         TGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGG                                                                                    <  SRR4302542.6328595/94‑1 (MQ=0)

         TGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGG                                                                                    >  SRR4302542.2370981/1‑94 (MQ=0)

         TGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGG                                                                                    <  SRR4302542.4758425/94‑1 (MQ=0)

          GATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGG                                                                                   <  SRR4302542.7423191/94‑1 (MQ=0)

           ATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGG                                                                                  <  SRR4302542.5211500/94‑1 (MQ=0)

           ATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGG                                                                                  <  SRR4302542.2895728/94‑1 (MQ=0)

            TGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGA                                                                                 <  SRR4302542.4506408/94‑1 (MQ=0)

             GAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGAT                                                                                <  SRR4302542.3548956/94‑1 (MQ=0)

             GAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGAT                                                                                <  SRR4302542.956414/94‑1 (MQ=0)

              AGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATG                                                                               <  SRR4302542.4581230/94‑1 (MQ=0)

               GGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGG                                                                              <  SRR4302542.1764001/94‑1 (MQ=0)

                GAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGA                                                                             >  SRR4302542.1291882/1‑94 (MQ=0)

                 AGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAA                                                                            >  SRR4302542.7223392/1‑94 (MQ=0)

                  GTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAAT                                                                           <  SRR4302542.6604698/94‑1 (MQ=0)

                  GTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAAT                                                                           >  SRR4302542.5220455/1‑94 (MQ=0)

                  GTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAAT                                                                           >  SRR4302542.1972250/1‑94 (MQ=0)

                  GTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAAT                                                                           >  SRR4302542.4707900/1‑94 (MQ=0)

                   TCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATT                                                                          >  SRR4302542.4527606/1‑94 (MQ=0)

                    CCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTT                                                                         >  SRR4302542.5611254/1‑94 (MQ=0)

                     CGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTT                                                                        >  SRR4302542.4439738/1‑94 (MQ=0)

                       GCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTA                                                                      >  SRR4302542.1866616/1‑94 (MQ=0)

                        CCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTAT                                                                     <  SRR4302542.6835316/94‑1 (MQ=0)

                        CCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTAT                                                                     >  SRR4302542.140781/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302542.505750/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302542.2732024/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302542.6565094/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302542.3271527/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302542.2540090/1‑94 (MQ=0)

                         CTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATC                                                                    >  SRR4302542.716591/1‑94 (MQ=0)

                          TGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCA                                                                   <  SRR4302542.717213/94‑1 (MQ=0)

                          TGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCA                                                                   <  SRR4302542.2607940/94‑1 (MQ=0)

                          TGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCA                                                                   >  SRR4302542.2077868/1‑94 (MQ=0)

                           GTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAG                                                                  <  SRR4302542.4262878/94‑1 (MQ=0)

                           GTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAG                                                                  <  SRR4302542.974783/94‑1 (MQ=0)

                           GTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAG                                                                  <  SRR4302542.3510428/94‑1 (MQ=0)

                            TATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGT                                                                 >  SRR4302542.7020691/1‑94 (MQ=0)

                            TATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGT                                                                 >  SRR4302542.719949/1‑94 (MQ=0)

                             ATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTA                                                                >  SRR4302542.1199694/1‑94 (MQ=0)

                             ATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTA                                                                <  SRR4302542.5983784/94‑1 (MQ=0)

                              TTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTAT                                                               <  SRR4302542.5522689/94‑1 (MQ=0)

                              TTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTAT                                                               <  SRR4302542.5849857/94‑1 (MQ=0)

                               TACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATC                                                              <  SRR4302542.98758/94‑1 (MQ=0)

                                ACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCC                                                             <  SRR4302542.6480833/94‑1 (MQ=0)

                                ACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCC                                                             >  SRR4302542.4994258/1‑94 (MQ=0)

                                 CAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCG                                                            >  SRR4302542.5977861/1‑94 (MQ=0)

                                 CAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCG                                                            <  SRR4302542.776614/94‑1 (MQ=0)

                                  AACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGT                                                           >  SRR4302542.7411600/1‑94 (MQ=0)

                                   CCCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTT                                                          <  SRR4302542.184433/94‑1 (MQ=0)

                                   ACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTT                                                          <  SRR4302542.2504676/94‑1 (MQ=0)

                                    CCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTG                                                         <  SRR4302542.479490/94‑1 (MQ=0)

                                    CCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTG                                                         >  SRR4302542.954615/1‑94 (MQ=0)

                                     CGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGA                                                        <  SRR4302542.1321275/94‑1 (MQ=0)

                                       CCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAAT                                                      <  SRR4302542.6685877/94‑1 (MQ=0)

                                        CACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATC                                                     >  SRR4302542.7546429/1‑94 (MQ=0)

                                        CACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATC                                                     <  SRR4302542.5509795/94‑1 (MQ=0)

                                         ACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCC                                                    <  SRR4302542.5189989/94‑1 (MQ=0)

                                         ACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCC                                                    >  SRR4302542.3374489/1‑94 (MQ=0)

                                          CCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCG                                                   <  SRR4302542.4660187/94‑1 (MQ=0)

                                          CCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCG                                                   <  SRR4302542.1471926/94‑1 (MQ=0)

                                          CCGCTAATATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCG                                                   <  SRR4302542.5484564/94‑1 (MQ=0)

                                           CGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATTCGTTGAATCCGG                                                  <  SRR4302542.6250530/94‑1 (MQ=1)

                                           CGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGG                                                  <  SRR4302542.6250529/94‑1 (MQ=2)

                                           CGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGG                                                  >  SRR4302542.2298682/1‑94 (MQ=2)

                                            GCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGT                                                 <  SRR4302542.6089720/94‑1 (MQ=4)

                                            GCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGT                                                 >  SRR4302542.7481231/1‑94 (MQ=4)

                                            GCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGT                                                 >  SRR4302542.6111947/1‑94 (MQ=4)

                                             CTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTC                                                >  SRR4302542.3145939/1‑94 (MQ=6)

                                             CTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTC                                                <  SRR4302542.1910158/94‑1 (MQ=6)

                                             CTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTC                                                >  SRR4302542.1857809/1‑94 (MQ=6)

                                             CTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTC                                                <  SRR4302542.1809284/94‑1 (MQ=6)

                                              TATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCA                                               <  SRR4302542.5425827/94‑1 (MQ=9)

                                              TATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCA                                               <  SRR4302542.520299/94‑1 (MQ=9)

                                                TTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATA                                             >  SRR4302542.7193817/1‑94 (MQ=13)

                                                 TATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAA                                            >  SRR4302542.2590348/1‑94 (MQ=18)

                                                 TATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAA                                            >  SRR4302542.6166401/1‑94 (MQ=18)

                                                  ATGACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAA                                           >  SRR4302542.1400910/1‑94 (MQ=21)

                                                    GACCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATG                                         >  SRR4302542.3714242/1‑94 (MQ=25)

                                                      CCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTA                                       >  SRR4302542.943266/1‑94 (MQ=31)

                                                      CCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTA                                       <  SRR4302542.6123325/94‑1 (MQ=30)

                                                      CCCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTA                                       <  SRR4302542.508033/94‑1 (MQ=30)

                                                       CCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAG                                      >  SRR4302542.3134739/1‑94 (MQ=34)

                                                       CCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAG                                      <  SRR4302542.5275830/94‑1 (MQ=32)

                                                       CCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAG                                      >  SRR4302542.1294344/1‑94 (MQ=32)

                                                       CCGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAG                                      <  SRR4302542.7415504/94‑1 (MQ=32)

                                                        CGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGA                                     <  SRR4302542.3004160/94‑1 (MQ=35)

                                                        CGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGA                                     >  SRR4302542.2761913/1‑94 (MQ=35)

                                                        CGCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGA                                     >  SRR4302542.7417424/1‑94 (MQ=35)

                                                         GCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAT                                    >  SRR4302542.3538789/1‑94 (MQ=39)

                                                         GCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAT                                    <  SRR4302542.2278530/94‑1 (MQ=37)

                                                         GCTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAT                                    <  SRR4302542.7050363/94‑1 (MQ=37)

                                                          CTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATC                                   <  SRR4302542.6185143/94‑1 (MQ=41)

                                                          CTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATC                                   <  SRR4302542.118729/94‑1 (MQ=39)

                                                          CTGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATC                                   <  SRR4302542.1701690/94‑1 (MQ=39)

                                                           TGCTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCC                                  <  SRR4302542.5221179/94‑1 (MQ=42)

                                                             CTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGC                                >  SRR4302542.1913538/1‑94 (MQ=47)

                                                             CTGGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGC                                >  SRR4302542.716691/1‑94 (MQ=47)

                                                              TGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCA                               >  SRR4302542.4186074/1‑94 (MQ=52)

                                                               GGGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAA                              <  SRR4302542.2867228/94‑1 (MQ=53)

                                                                GGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAG                             <  SRR4302542.6161724/94‑1 (MQ=55)

                                                                GGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAG                             <  SRR4302542.1563479/94‑1 (MQ=55)

                                                                GGGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAG                             <  SRR4302542.4671877/94‑1 (MQ=55)

                                                                 GGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGG                            <  SRR4302542.1828776/94‑1 (MQ=58)

                                                                 GGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGG                            >  SRR4302542.3202035/1‑94 (MQ=58)

                                                                 GGCGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGG                            <  SRR4302542.1379075/94‑1 (MQ=58)

                                                                   CGGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTT                          >  SRR4302542.3763778/1‑94 (MQ=60)

                                                                    GGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTT                         <  SRR4302542.4366511/94‑1 (MQ=60)

                                                                    GGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTT                         >  SRR4302542.613716/1‑94 (MQ=60)

                                                                    GGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTT                         >  SRR4302542.1841180/1‑94 (MQ=60)

                                                                    GGTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTT                         >  SRR4302542.811328/1‑94 (MQ=60)

                                                                     GTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTG                        <  SRR4302542.135905/94‑1 (MQ=60)

                                                                     GTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTG                        <  SRR4302542.6658970/94‑1 (MQ=60)

                                                                     GTATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTG                        <  SRR4302542.2090568/94‑1 (MQ=60)

                                                                      TATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGG                       >  SRR4302542.3353710/1‑94 (MQ=60)

                                                                      TATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGG                       >  SRR4302542.7093470/1‑94 (MQ=60)

                                                                       ATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGT                      >  SRR4302542.1473989/1‑94 (MQ=60)

                                                                       ATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGT                      >  SRR4302542.2579008/1‑94 (MQ=60)

                                                                       ATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGT                      >  SRR4302542.2500417/1‑94 (MQ=60)

                                                                       ATATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGT                      >  SRR4302542.4694972/1‑94 (MQ=60)

                                                                        TATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTT                     <  SRR4302542.3067819/94‑1 (MQ=60)

                                                                        TATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTT                     <  SRR4302542.685008/94‑1 (MQ=60)

                                                                        TATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTT                     <  SRR4302542.2904063/94‑1 (MQ=60)

                                                                         ATCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTG                    >  SRR4302542.3140551/1‑94 (MQ=60)

                                                                          TCACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGA                   <  SRR4302542.3067437/94‑1 (MQ=60)

                                                                           CACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGAT                  <  SRR4302542.3755689/94‑1 (MQ=60)

                                                                           CACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGAT                  >  SRR4302542.587202/1‑94 (MQ=60)

                                                                           CACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGAT                  <  SRR4302542.6777190/94‑1 (MQ=60)

                                                                            ACTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATA                 >  SRR4302542.6413888/1‑94 (MQ=60)

                                                                             CTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATAT                <  SRR4302542.3205076/94‑1 (MQ=60)

                                                                             CTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATAT                >  SRR4302542.100859/1‑94 (MQ=60)

                                                                             CTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATAT                <  SRR4302542.5699937/94‑1 (MQ=60)

                                                                             CTCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATAT                <  SRR4302542.3984250/94‑1 (MQ=60)

                                                                              TCAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATA               <  SRR4302542.5328121/94‑1 (MQ=60)

                                                                               CAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAA              >  SRR4302542.25699/1‑94 (MQ=60)

                                                                               CAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAA              >  SRR4302542.570408/1‑94 (MQ=60)

                                                                               CAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAA              <  SRR4302542.702113/94‑1 (MQ=60)

                                                                               CAGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAA              <  SRR4302542.162447/94‑1 (MQ=60)

                                                                                AGGAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAA             <  SRR4302542.1605804/94‑1 (MQ=60)

                                                                                  GATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATT           <  SRR4302542.1275894/94‑1 (MQ=60)

                                                                                  GAACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATT           <  SRR4302542.5083617/94‑1 (MQ=60)

                                                                                   ATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTT          >  SRR4302542.5753394/1‑94 (MQ=60)

                                                                                   AACCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTT          >  SRR4302542.132011/1‑94 (MQ=60)

                                                                                     CCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTAT        <  SRR4302542.5090222/94‑1 (MQ=60)

                                                                                      CGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATA       >  SRR4302542.1968126/1‑94 (MQ=60)

                                                                                      CGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATA       <  SRR4302542.7159623/94‑1 (MQ=60)

                                                                                      CGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATA       >  SRR4302542.3099191/1‑94 (MQ=60)

                                                                                       GATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATAC      <  SRR4302542.6614676/94‑1 (MQ=60)

                                                                                        ATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACC     <  SRR4302542.1207983/94‑1 (MQ=60)

                                                                                         TTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC    <  SRR4302542.3814591/94‑1 (MQ=60)

                                                                                         TTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC    <  SRR4302542.3323961/94‑1 (MQ=60)

                                                                                          TGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCC   >  SRR4302542.5278595/1‑94 (MQ=60)

                                                                                          TGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCC   <  SRR4302542.5328734/94‑1 (MQ=60)

                                                                                           GGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCCG  <  SRR4302542.3868206/94‑1 (MQ=60)

GCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCCG  >  NC_000913/3765141‑3765325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`