Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,783,479 |
A→G |
D198G (GAT→GGT) |
yibO → |
putative 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,783,479 | 0 | A | G | 86.1%
| 668.5
/ 99.8
| 288 | D198G (GAT→GGT) | yibO | putative 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| Reads supporting (aligned to +/- strand): ref base A (18/22); new base G (113/134); total (132/156) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.31e-01 |
Only 100 of 292 total aligned reads displayed.
AAAATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATG > NC_000913/3783387‑3783568
|
aaTTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTc < 1:6099243/93‑1 (MQ=255)
aaTTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTc < 2:5750936/93‑1 (MQ=255)
aaTTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTc > 2:2508579/1‑93 (MQ=255)
ttCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGTGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATcgc < 1:1877468/93‑1 (MQ=255)
tCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTcgcg > 1:358596/1‑93 (MQ=255)
gaagaaAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTa < 2:1567952/93‑1 (MQ=255)
gaagaaAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTa > 2:1663425/1‑93 (MQ=255)
agaaAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGa > 2:4422748/1‑93 (MQ=255)
aaaaaTTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGaaa > 1:5588323/1‑93 (MQ=255)
aaaTTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGaaaaa < 2:6100094/93‑1 (MQ=255)
aTTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGc < 1:3380306/93‑1 (MQ=255)
tttGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCt < 2:5581990/93‑1 (MQ=255)
tGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTa < 1:4115735/93‑1 (MQ=255)
tGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTa < 2:4663174/93‑1 (MQ=255)
tGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTa < 1:3441194/93‑1 (MQ=255)
gCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTAt < 1:3993346/93‑1 (MQ=255)
gCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTAt < 2:5138668/93‑1 (MQ=255)
gcgcTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGAc > 2:703057/1‑93 (MQ=255)
gcgcTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGAc < 1:4320922/93‑1 (MQ=255)
gcgcTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTACAAAAAGCTTATGAc < 2:6445265/93‑1 (MQ=255)
cgcTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGTGGGCGCGTAGAAAAAGCTTATGAcc > 2:4258619/1‑93 (MQ=255)
gcTGGGCAAATGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACct > 1:4852748/1‑93 (MQ=255)
gcTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACct < 1:2022330/93‑1 (MQ=255)
gcTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACct < 2:1850543/93‑1 (MQ=255)
gcTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACct < 1:5756742/93‑1 (MQ=255)
cTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACctg > 2:1438089/1‑93 (MQ=255)
cTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACctg > 2:2240293/1‑93 (MQ=255)
tGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACctgc < 2:6764638/93‑1 (MQ=255)
tGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACctgc < 2:359750/93‑1 (MQ=255)
gggCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACctgct > 2:3939629/1‑93 (MQ=255)
ggCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACctgctg > 2:4554718/1‑93 (MQ=255)
gCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGa < 2:4203740/93‑1 (MQ=255)
cAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGAc < 2:901580/93‑1 (MQ=255)
aaGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGActc > 1:6200191/1‑93 (MQ=255)
aaGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGActc < 1:5407131/93‑1 (MQ=255)
aaGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGActc > 2:2974453/1‑93 (MQ=255)
aaGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGActc < 1:4952375/93‑1 (MQ=255)
aGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGActct > 1:3951758/1‑93 (MQ=255)
aGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGActct < 2:7112692/93‑1 (MQ=255)
ggCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTg < 1:5964236/93‑1 (MQ=255)
gCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTgg < 2:6950147/93‑1 (MQ=255)
gCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTgg < 2:3751891/93‑1 (MQ=255)
cgcgTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGgcg < 1:691702/93‑1 (MQ=255)
cgTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCa < 2:730522/93‑1 (MQ=255)
gTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAg < 1:1748397/93‑1 (MQ=255)
gTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAg < 1:3076137/93‑1 (MQ=255)
aGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAggg < 1:6005185/93‑1 (MQ=255)
aGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAggg < 1:3695516/93‑1 (MQ=255)
gCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGc < 1:5883131/93‑1 (MQ=255)
gCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGc > 2:3210344/1‑93 (MQ=255)
gCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGc > 1:2183058/1‑93 (MQ=255)
gTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGa < 2:2009247/93‑1 (MQ=255)
tCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAg < 2:2842541/93‑1 (MQ=255)
atcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTc < 2:6214966/93‑1 (MQ=255)
atcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTc > 1:2738123/1‑93 (MQ=255)
tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTcc > 1:2618918/1‑93 (MQ=255)
tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTcc < 1:4423878/93‑1 (MQ=255)
tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTcc > 1:5131250/1‑93 (MQ=255)
atTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAg > 2:5888523/1‑93 (MQ=255)
ttGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAgg < 2:6473932/93‑1 (MQ=255)
ttGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAgg > 1:7236029/1‑93 (MQ=255)
tGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGc < 1:7352560/93‑1 (MQ=255)
gTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCg > 1:141170/1‑93 (MQ=255)
tCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGa < 1:5691751/93‑1 (MQ=255)
ttACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAc < 2:3057435/93‑1 (MQ=255)
ctacGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAccgc < 2:2350495/93‑1 (MQ=255)
tacGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAccgcc > 2:2076538/1‑93 (MQ=255)
tacGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAccgcc < 1:6989782/93‑1 (MQ=255)
tacGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAccgcc > 2:4030470/1‑93 (MQ=255)
tacGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAccgcc > 1:1291182/1‑93 (MQ=255)
cgcgATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGt < 2:1089708/93‑1 (MQ=255)
cgcgATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGt < 1:1648815/93‑1 (MQ=255)
gcgATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGtt > 2:6559926/1‑93 (MQ=255)
gcgATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGtt > 1:5827841/1‑93 (MQ=255)
gcgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGtt < 2:1191529/93‑1 (MQ=255)
gATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGc > 1:802179/1‑93 (MQ=255)
gATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGc < 1:6717652/93‑1 (MQ=255)
aTGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCt > 2:764304/1‑93 (MQ=255)
aTGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCt < 1:4556197/93‑1 (MQ=255)
aTGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCt < 1:3476865/93‑1 (MQ=255)
tGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTg < 2:506383/93‑1 (MQ=255)
tGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTg < 2:4348881/93‑1 (MQ=255)
ggACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTgg > 1:1074334/1‑93 (MQ=255)
ccGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGttt < 2:537184/93‑1 (MQ=255)
cgcgATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTg < 1:2086072/93‑1 (MQ=255)
cgATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGGCCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCa < 1:5508539/93‑1 (MQ=255)
cgATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCa < 1:2923215/93‑1 (MQ=255)
gATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAg < 1:6629381/93‑1 (MQ=255)
gATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAg > 2:2691039/1‑93 (MQ=255)
tAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgc > 2:1485750/1‑93 (MQ=255)
aaCCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgct < 1:363722/93‑1 (MQ=255)
ccGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgctgc > 2:6900852/1‑93 (MQ=255)
cGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGgctgct < 1:6489223/93‑1 (MQ=255)
ttGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTa < 2:1759804/93‑1 (MQ=255)
ttGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTa < 1:2404392/93‑1 (MQ=255)
ttGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTa < 1:6369451/93‑1 (MQ=255)
ttGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTa > 1:7458581/1‑93 (MQ=255)
tGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTAt < 1:3193355/93‑1 (MQ=255)
tGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTAt < 1:7200723/93‑1 (MQ=255)
ggggTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAACGCCGTTGCTGGTTTGCAGGCTGCTTATg > 1:1155980/1‑93 (MQ=255)
|
AAAATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATG > NC_000913/3783387‑3783568
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAAATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCG > NC_000913/3783386‑3783572
|
AAAAATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGA > SRR4302542.6066427/1‑94 (MQ=60)
AAATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTC > SRR4302542.1180961/1‑94 (MQ=60)
AAATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTC > SRR4302542.6034256/1‑94 (MQ=60)
AATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCG < SRR4302542.6158271/94‑1 (MQ=60)
ATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGC > SRR4302542.6320576/1‑94 (MQ=60)
TTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGTGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCG < SRR4302542.1893715/94‑1 (MQ=60)
TTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCG > SRR4302542.698734/1‑94 (MQ=60)
TTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCG > SRR4302542.361722/1‑94 (MQ=60)
CGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTA < SRR4302542.4161946/94‑1 (MQ=60)
CGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTA > SRR4302542.5466401/1‑94 (MQ=60)
GAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAG < SRR4302542.2066073/94‑1 (MQ=60)
GAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAG > SRR4302542.3490701/1‑94 (MQ=60)
AGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGCTGGACCGCGATAACCGTTGGGGTCGCGTAGAA < SRR4302542.4536239/94‑1 (MQ=60)
AGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAA > SRR4302542.6648862/1‑94 (MQ=60)
GAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAA > SRR4302542.5642623/1‑94 (MQ=60)
GAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAA < SRR4302542.6483238/94‑1 (MQ=60)
GAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAA > SRR4302542.2190214/1‑94 (MQ=60)
AAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAG < SRR4302542.2583865/94‑1 (MQ=60)
AATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGC < SRR4302542.1382257/94‑1 (MQ=60)
AATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGACGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGC < SRR4302542.7371300/94‑1 (MQ=60)
ATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCT < SRR4302542.3412064/94‑1 (MQ=60)
TGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTAT < SRR4302542.5000862/94‑1 (MQ=60)
TGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTAT < SRR4302542.4156289/94‑1 (MQ=60)
TGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTAT < SRR4302542.2185861/94‑1 (MQ=60)
TGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTAT < SRR4302542.3473410/94‑1 (MQ=60)
GCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATG < SRR4302542.4032743/94‑1 (MQ=60)
GCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATG < SRR4302542.1808409/94‑1 (MQ=60)
GCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATG < SRR4302542.3566308/94‑1 (MQ=60)
CCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGA > SRR4302542.587980/1‑94 (MQ=60)
CGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGAC > SRR4302542.7239920/1‑94 (MQ=60)
CGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGAC > SRR4302542.3424354/1‑94 (MQ=60)
CGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGAC < SRR4302542.3106177/94‑1 (MQ=60)
CGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGAC > SRR4302542.3613447/1‑94 (MQ=60)
GCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACC < SRR4302542.1933783/94‑1 (MQ=60)
GCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACC < SRR4302542.4363401/94‑1 (MQ=60)
CGCTGGGCAAATGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCT > SRR4302542.4900004/1‑94 (MQ=60)
CGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCT > SRR4302542.165579/1‑94 (MQ=60)
GCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTG < SRR4302542.5812623/94‑1 (MQ=60)
GCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTG < SRR4302542.2039822/94‑1 (MQ=60)
CTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGC > SRR4302542.2655362/1‑94 (MQ=60)
GGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTG < SRR4302542.3392396/94‑1 (MQ=60)
CAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGTGGTCGCGTAGAAAAAGCTTATGACCTGCTGACT > SRR4302542.7042549/1‑94 (MQ=60)
CAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCaatgatgg < SRR4302542.5998526/94‑9 (MQ=60)
CAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACT < SRR4302542.3255453/94‑1 (MQ=60)
CAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACT > SRR4302542.3687079/1‑94 (MQ=60)
AAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTC > SRR4302542.6260818/1‑94 (MQ=60)
AAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTC < SRR4302542.1791362/94‑1 (MQ=60)
AAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCT > SRR4302542.6730748/1‑94 (MQ=60)
AAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCT > SRR4302542.3990773/1‑94 (MQ=60)
AAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCT < SRR4302542.5000497/94‑1 (MQ=60)
AAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCT < SRR4302542.5459656/94‑1 (MQ=60)
AAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGAGTCT < SRR4302542.2571088/94‑1 (MQ=60)
AGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTG > SRR4302542.6364119/1‑94 (MQ=60)
GGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGG < SRR4302542.6021979/94‑1 (MQ=60)
GCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGC > SRR4302542.4760219/1‑94 (MQ=60)
CCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCG < SRR4302542.3761292/94‑1 (MQ=60)
CCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCG < SRR4302542.3907350/94‑1 (MQ=60)
CGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGC < SRR4302542.697680/94‑1 (MQ=60)
CGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAG > SRR4302542.6140367/1‑94 (MQ=60)
CGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAG < SRR4302542.4668371/94‑1 (MQ=60)
GTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGG < SRR4302542.1763569/94‑1 (MQ=60)
GTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGG < SRR4302542.3105445/94‑1 (MQ=60)
GTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGG < SRR4302542.6003583/94‑1 (MQ=60)
GTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGG < SRR4302542.1683988/94‑1 (MQ=60)
GTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGG > SRR4302542.5635241/1‑94 (MQ=60)
TAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGG < SRR4302542.3627997/94‑1 (MQ=60)
AGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGC < SRR4302542.3055691/94‑1 (MQ=60)
AGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGC < SRR4302542.3732082/94‑1 (MQ=60)
AGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGC < SRR4302542.6063340/94‑1 (MQ=60)
AGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGC > SRR4302542.2201863/1‑94 (MQ=60)
GCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCG < SRR4302542.4975633/94‑1 (MQ=60)
GCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCG < SRR4302542.5940159/94‑1 (MQ=60)
GTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAG < SRR4302542.2032826/94‑1 (MQ=60)
GTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAG > SRR4302542.7299959/1‑94 (MQ=60)
TCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGT < SRR4302542.4076908/94‑1 (MQ=60)
TCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGT < SRR4302542.939632/94‑1 (MQ=60)
CCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTT > SRR4302542.1690851/1‑94 (MQ=60)
CCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTT < SRR4302542.4003313/94‑1 (MQ=60)
CATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTC > SRR4302542.2764530/1‑94 (MQ=60)
ATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCC > SRR4302542.5181087/1‑94 (MQ=60)
ATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCC > SRR4302542.2644227/1‑94 (MQ=60)
ATCATTGGTCGTTACTACGCGATGGAACGCGATTACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCACGGCGAGTTCC > SRR4302542.6876692/1‑94 (MQ=60)
TCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTGCA < SRR4302542.2716768/94‑1 (MQ=60)
TCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCA < SRR4302542.4467323/94‑1 (MQ=60)
CATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAG < SRR4302542.6833986/94‑1 (MQ=60)
CATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAG < SRR4302542.2050161/94‑1 (MQ=60)
CATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAG > SRR4302542.6596648/1‑94 (MQ=60)
CATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAG > SRR4302542.2288650/1‑94 (MQ=60)
ATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGG > SRR4302542.1193767/1‑94 (MQ=60)
ATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGG > SRR4302542.7307012/1‑94 (MQ=60)
ATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGG < SRR4302542.402469/94‑1 (MQ=60)
TGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCC < SRR4302542.7424558/94‑1 (MQ=60)
TGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCC > SRR4302542.4038981/1‑94 (MQ=60)
GGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCG > SRR4302542.142351/1‑94 (MQ=60)
GGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCG > SRR4302542.7076640/1‑94 (MQ=60)
GGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCG < SRR4302542.3446578/94‑1 (MQ=60)
GTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGA > SRR4302542.5617617/1‑94 (MQ=60)
GTCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGA > SRR4302542.5647079/1‑94 (MQ=60)
TCGTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGAT < SRR4302542.5747023/94‑1 (MQ=60)
CGTTACTACGCAATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATA < SRR4302542.7323280/94‑1 (MQ=60)
GTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAC > SRR4302542.80374/1‑94 (MQ=60)
GTTACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAC < SRR4302542.3642607/94‑1 (MQ=60)
TACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCG < SRR4302542.3499048/94‑1 (MQ=60)
ACTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGC > SRR4302542.4401453/1‑94 (MQ=60)
CTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCC > SRR4302542.1302306/1‑94 (MQ=60)
CTACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCC > SRR4302542.3180521/1‑94 (MQ=60)
TACGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCG < SRR4302542.7058441/94‑1 (MQ=60)
CGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTT > SRR4302542.5884407/1‑94 (MQ=60)
CGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTT < SRR4302542.1663065/94‑1 (MQ=60)
CGCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTT < SRR4302542.509936/94‑1 (MQ=60)
GCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTG < SRR4302542.746255/94‑1 (MQ=60)
GCGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTG < SRR4302542.1303043/94‑1 (MQ=60)
CGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGC > SRR4302542.6220041/1‑94 (MQ=60)
CGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGC > SRR4302542.2966212/1‑94 (MQ=60)
CGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGC > SRR4302542.809082/1‑94 (MQ=60)
CGATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGC > SRR4302542.5845028/1‑94 (MQ=60)
GATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCT < SRR4302542.4512702/94‑1 (MQ=60)
GATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCT < SRR4302542.6783811/94‑1 (MQ=60)
GATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCT < SRR4302542.5720182/94‑1 (MQ=60)
GATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCT < SRR4302542.5882706/94‑1 (MQ=60)
ATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTG < SRR4302542.4600771/94‑1 (MQ=60)
ATGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTG > SRR4302542.7299080/1‑94 (MQ=60)
ATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTG < SRR4302542.3509409/94‑1 (MQ=60)
TGGACCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGG > SRR4302542.1083570/1‑94 (MQ=60)
ACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTT < SRR4302542.5543454/94‑1 (MQ=60)
CCGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTG < SRR4302542.5270832/94‑1 (MQ=60)
CCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTG > SRR4302542.576893/1‑94 (MQ=60)
CGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGC > SRR4302542.2867775/1‑94 (MQ=60)
CGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGC < SRR4302542.2104080/94‑1 (MQ=60)
CGCGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGC > SRR4302542.6699059/1‑94 (MQ=60)
CGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGGCCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAG < SRR4302542.5562071/94‑1 (MQ=60)
CGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAG > SRR4302542.2377717/1‑94 (MQ=60)
CGATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAG < SRR4302542.2951223/94‑1 (MQ=60)
GATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGCCCTGCTGACTCTGGCGCGGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGG < SRR4302542.4267866/94‑1 (MQ=60)
GATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGG < SRR4302542.110128/94‑1 (MQ=60)
GATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGG < SRR4302542.5441348/94‑1 (MQ=60)
GATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGG < SRR4302542.6694738/94‑1 (MQ=60)
ATAACCGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGC > SRR4302542.5886552/1‑94 (MQ=60)
AACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTG < SRR4302542.366884/94‑1 (MQ=60)
CCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCT > SRR4302542.5755252/1‑94 (MQ=60)
CGTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTT < SRR4302542.6553161/94‑1 (MQ=60)
GTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTA > SRR4302542.4900301/1‑94 (MQ=60)
GTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTA > SRR4302542.7531630/1‑94 (MQ=60)
GTTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTA > SRR4302542.7531629/1‑94 (MQ=60)
TTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTAT < SRR4302542.6432175/94‑1 (MQ=60)
TTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTAT < SRR4302542.2427794/94‑1 (MQ=60)
TTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTAT < SRR4302542.6198317/94‑1 (MQ=60)
TTGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTAT < SRR4302542.3724409/94‑1 (MQ=60)
TTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTAT < SRR4302542.6462118/94‑1 (MQ=60)
TGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACGGCCGTTGCTGGTTTGCAGGCTGCTTATG > SRR4302542.1468402/1‑94 (MQ=60)
TGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATG < SRR4302542.3223595/94‑1 (MQ=60)
TGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATG < SRR4302542.7271385/94‑1 (MQ=60)
TGGGGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATAACGCCGTTGCTGGTTTGCAGGCTGCTTATG > SRR4302542.1165886/1‑94 (MQ=60)
GGTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTC > SRR4302542.3613025/1‑94 (MQ=60)
ATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCG > SRR4302542.1686954/1‑94 (MQ=60)
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AAAAATTCGAAGAAAAATTTGCCGCGCTGGGCAAAGGCCGCGTAGCGTCCATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCG > NC_000913/3783386‑3783572
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |