Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,878,432 |
A→G |
C140R (TGC→CGC) |
recF ← |
RecF |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,878,432 | 0 | A | G | 85.6%
| 710.3
/ 107.6
| 307 | C140R (TGC→CGC) | recF | RecF |
| Reads supporting (aligned to +/- strand): ref base A (20/24); new base G (111/151); total (131/176) |
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 |
Only 100 of 307 total aligned reads displayed.
CGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG > NC_000913/3878341‑3878522
|
gtgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTc < 1:1774983/93‑1 (MQ=255)
gtgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTc > 1:2616559/1‑93 (MQ=255)
tgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTcc < 2:566219/93‑1 (MQ=255)
tgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTcc > 2:4633964/1‑93 (MQ=255)
aCCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAg < 2:1523045/93‑1 (MQ=255)
aCCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAg > 2:5712095/1‑93 (MQ=255)
ccTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGt > 2:736435/1‑93 (MQ=255)
ccTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGt < 2:4067583/93‑1 (MQ=255)
ccTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGt > 2:5091979/1‑93 (MQ=255)
cTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTc > 1:243534/1‑93 (MQ=255)
ggCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGa < 1:5822274/93‑1 (MQ=255)
gcgcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAg < 2:1857164/93‑1 (MQ=255)
gcgcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAg < 1:6630043/93‑1 (MQ=255)
cgcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAgg < 2:7063816/93‑1 (MQ=255)
cgcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCACTCGAgg < 2:4719325/93‑1 (MQ=255)
gcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGa < 1:5182385/93‑1 (MQ=255)
cAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCTCCAGTCGAGGaa < 1:3735004/93‑1 (MQ=255)
cAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGaa < 2:2362085/93‑1 (MQ=255)
cAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGaa > 1:4834496/1‑93 (MQ=255)
cgccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGc > 1:4631662/1‑93 (MQ=255)
gccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGct > 2:1685110/1‑93 (MQ=255)
ccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGGAAGCGTCCCCAGTCGAGGAATGctc > 2:75532/1‑93 (MQ=255)
ccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGctc < 1:7276857/93‑1 (MQ=255)
gcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtctt > 2:1292791/1‑93 (MQ=255)
cATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtcttc < 1:6274315/93‑1 (MQ=255)
cATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCtcttc < 1:3476277/93‑1 (MQ=255)
cATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCtcttc > 1:1945814/1‑93 (MQ=255)
aTTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtcttct > 2:3552912/1‑93 (MQ=255)
aTTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCtcttct > 1:2146519/1‑93 (MQ=255)
ttGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTg > 1:3246436/1‑93 (MQ=255)
gcgcTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTa < 2:309057/93‑1 (MQ=255)
gctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAtt < 2:6358181/93‑1 (MQ=255)
gctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAtt < 2:2433678/93‑1 (MQ=255)
ctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAttt < 2:6965313/93‑1 (MQ=255)
ctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTAttt < 1:1352667/93‑1 (MQ=255)
tgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTg > 2:5348292/1‑93 (MQ=255)
tgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTg < 1:2696612/93‑1 (MQ=255)
tgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTg < 2:212944/93‑1 (MQ=255)
gctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTgg > 2:7172967/1‑93 (MQ=255)
gctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTgg < 1:5287483/93‑1 (MQ=255)
tGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGgc < 2:2194337/93‑1 (MQ=255)
cAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGgccgcc > 2:4850083/1‑93 (MQ=255)
gCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGa < 2:6031366/93‑1 (MQ=255)
gCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGa < 1:5460786/93‑1 (MQ=255)
cTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGag > 1:3713204/1‑93 (MQ=255)
ttGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagt < 2:3879999/93‑1 (MQ=255)
gagaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaa < 1:4991534/93‑1 (MQ=255)
gagaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaa > 2:6312373/1‑93 (MQ=255)
agaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaa < 1:953778/93‑1 (MQ=255)
ttGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaagta < 2:3414408/93‑1 (MQ=255)
gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaagtann > 1:355973/1‑91 (MQ=255)
gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAgtaaagtaaa > 2:1009108/1‑93 (MQ=255)
gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAgtaaagtaaa > 2:3268157/1‑93 (MQ=255)
gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAgtaaagtaaa < 1:3931159/93‑1 (MQ=255)
gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAgtaaagtaaa > 2:5805641/1‑93 (MQ=255)
cTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAc < 2:6448232/93‑1 (MQ=255)
cTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAc < 1:3881089/93‑1 (MQ=255)
tCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAcc > 2:6593842/1‑93 (MQ=255)
cAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt > 2:6794326/1‑93 (MQ=255)
cAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt < 1:460239/93‑1 (MQ=255)
cAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt > 2:4944126/1‑93 (MQ=255)
ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc < 2:3148879/93‑1 (MQ=255)
ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc > 1:4369057/1‑93 (MQ=255)
ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc < 2:545996/93‑1 (MQ=255)
cGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTg < 2:7304884/93‑1 (MQ=255)
cGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTg > 1:844695/1‑93 (MQ=255)
ggTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTgg > 1:2758436/1‑93 (MQ=255)
ggTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTgg < 1:5100781/93‑1 (MQ=255)
ggTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTgg < 2:1201562/93‑1 (MQ=255)
gTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGc < 2:3488522/93‑1 (MQ=255)
aaaaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGtt < 2:4425332/93‑1 (MQ=255)
aaaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTa < 1:1142954/93‑1 (MQ=255)
aaaaTCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTa > 2:3783738/1‑93 (MQ=255)
aaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAt > 1:1053049/1‑93 (MQ=255)
aaTCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATc < 2:3721024/93‑1 (MQ=255)
tCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCaa > 2:3578681/1‑93 (MQ=255)
ccGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCCTCTGGCGTTATCAAc > 2:2514809/1‑93 (MQ=255)
cGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACt < 2:1756079/93‑1 (MQ=255)
cGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACt < 2:6640526/93‑1 (MQ=255)
gggTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTg < 1:1531497/93‑1 (MQ=255)
gTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa < 2:3370403/93‑1 (MQ=255)
gTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa > 2:5886036/1‑93 (MQ=255)
ttCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAt < 1:5591044/93‑1 (MQ=255)
ttCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAt < 2:7487767/93‑1 (MQ=255)
tCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt < 2:5404537/93‑1 (MQ=255)
tCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt < 1:3068517/93‑1 (MQ=255)
tCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt < 1:7440583/93‑1 (MQ=255)
tCGTTATGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt < 1:648389/93‑1 (MQ=255)
cGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTg < 1:3679406/93‑1 (MQ=255)
ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc > 2:2704418/1‑93 (MQ=255)
ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc > 1:6094125/1‑93 (MQ=255)
ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc < 2:6197704/93‑1 (MQ=255)
ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc > 1:7318953/1‑93 (MQ=255)
gtgAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAt > 1:4228724/1‑93 (MQ=255)
gtgAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAt < 1:6889178/93‑1 (MQ=255)
aaaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAg < 1:600418/93‑1 (MQ=255)
aaaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAg > 2:5253247/1‑93 (MQ=255)
aaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAgg < 1:4810959/93‑1 (MQ=255)
aaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAgg > 1:6680140/1‑93 (MQ=255)
aGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGt > 1:1042957/1‑93 (MQ=255)
|
CGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG > NC_000913/3878341‑3878522
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGC > NC_000913/3878339‑3878525
|
AACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCG < SRR4302542.5132848/94‑1 (MQ=60)
AACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCG < SRR4302542.3403804/94‑1 (MQ=60)
CGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTC > SRR4302542.2641838/1‑94 (MQ=60)
CGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTC > SRR4302542.3198249/1‑94 (MQ=60)
GTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCC > SRR4302542.3937400/1‑94 (MQ=60)
GTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCC > SRR4302542.3642155/1‑94 (MQ=60)
GTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCC < SRR4302542.1790368/94‑1 (MQ=60)
TCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGA‑TGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAG < SRR4302542.3013180/94‑1 (MQ=60)
CACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAG > SRR4302542.7390024/1‑94 (MQ=60)
CACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAG < SRR4302542.4871810/94‑1 (MQ=60)
CACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAG > SRR4302542.5246343/1‑94 (MQ=60)
CACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAG < SRR4302542.6739859/94‑1 (MQ=60)
ACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGT > SRR4302542.1105008/1‑94 (MQ=60)
CCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTC > SRR4302542.245624/1‑94 (MQ=60)
CTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCG < SRR4302542.5526224/94‑1 (MQ=60)
TGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGA > SRR4302542.2374565/1‑94 (MQ=60)
GGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAG < SRR4302542.5878798/94‑1 (MQ=60)
GCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGG < SRR4302542.5984240/94‑1 (MQ=60)
GCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGG < SRR4302542.186296/94‑1 (MQ=60)
GCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGG < SRR4302542.6695406/94‑1 (MQ=60)
GCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGG < SRR4302542.4740791/94‑1 (MQ=60)
GCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAA < SRR4302542.5232732/94‑1 (MQ=60)
GCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAA > SRR4302542.4881590/1‑94 (MQ=60)
GCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGGGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGGA > SRR4302542.6235201/1‑94 (MQ=60)
CAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCTCCAGTCGAGGAAT < SRR4302542.3771983/94‑1 (MQ=60)
GCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGC > SRR4302542.4676920/1‑94 (MQ=60)
CGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCT > SRR4302542.5035876/1‑94 (MQ=60)
CCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCT < SRR4302542.7348223/94‑1 (MQ=60)
CGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTT < SRR4302542.4783318/94‑1 (MQ=60)
CGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTT > SRR4302542.3749876/1‑94 (MQ=60)
CGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTT > SRR4302542.428012/1‑94 (MQ=60)
CGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTT < SRR4302542.7367518/94‑1 (MQ=60)
CGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTT > SRR4302542.3695281/1‑94 (MQ=60)
GCNNNNCNCTNCNTNAGCAATCGNNNNAGANTGCTNCANGCNGTGNNAAATCNGNNNNCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTC < SRR4302542.5691478/94‑1 (MQ=55)
GCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTC > SRR4302542.5081514/1‑94 (MQ=60)
GCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTC > SRR4302542.1962643/1‑94 (MQ=60)
CATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCT < SRR4302542.1999322/94‑1 (MQ=60)
CATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCT < SRR4302542.6336157/94‑1 (MQ=60)
CATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCT > SRR4302542.2165027/1‑94 (MQ=60)
CATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCT < SRR4302542.3508816/94‑1 (MQ=60)
ATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTG > SRR4302542.3277116/1‑94 (MQ=60)
ATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTG < SRR4302542.339060/94‑1 (MQ=60)
ATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTG > SRR4302542.1679316/1‑94 (MQ=60)
TTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGT < SRR4302542.3308691/94‑1 (MQ=60)
CGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATT > SRR4302542.5294993/1‑94 (MQ=60)
GCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTT < SRR4302542.6741887/94‑1 (MQ=60)
CTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTG < SRR4302542.1364347/94‑1 (MQ=60)
CTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTG > SRR4302542.126109/1‑94 (MQ=60)
TGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGG < SRR4302542.2722619/94‑1 (MQ=60)
TGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGG > SRR4302542.9989/1‑94 (MQ=60)
GCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGG < SRR4302542.6550222/94‑1 (MQ=60)
GCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGG < SRR4302542.854025/94‑1 (MQ=60)
GCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGG < SRR4302542.7486906/94‑1 (MQ=60)
GCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGG < SRR4302542.5338883/94‑1 (MQ=60)
GCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGG < SRR4302542.660947/94‑1 (MQ=60)
CTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGNAANANNCGGGTTNGTTGTGAAAGNGTCCNCANTCNAGGAATGNTNNTCTntntnnnnnn > SRR4302542.6556221/1‑84 (MQ=60)
CTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGG < SRR4302542.2628340/94‑1 (MQ=60)
TTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGC < SRR4302542.4932382/94‑1 (MQ=60)
TGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCC < SRR4302542.7405415/94‑1 (MQ=60)
TGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCC > SRR4302542.2338603/1‑94 (MQ=60)
AGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGC > SRR4302542.3556920/1‑94 (MQ=60)
AATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGT > SRR4302542.141076/1‑94 (MQ=60)
AATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGT > SRR4302542.2783799/1‑94 (MQ=60)
ATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTT > SRR4302542.5645414/1‑94 (MQ=60)
TCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTG < SRR4302542.3756514/94‑1 (MQ=60)
TCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTG < SRR4302542.5157865/94‑1 (MQ=60)
TCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTG > SRR4302542.3139650/1‑94 (MQ=60)
TCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTG > SRR4302542.3720816/1‑94 (MQ=60)
TCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTG < SRR4302542.1054879/94‑1 (MQ=60)
GCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAG > SRR4302542.3749939/1‑94 (MQ=60)
GCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAG < SRR4302542.5513840/94‑1 (MQ=60)
CTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGT > SRR4302542.3873715/1‑94 (MQ=60)
CTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGT > SRR4302542.4592287/1‑94 (MQ=60)
CTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGT < SRR4302542.914233/94‑1 (MQ=60)
CTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGT > SRR4302542.1059411/1‑94 (MQ=60)
TGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAA > SRR4302542.4862836/1‑94 (MQ=60)
TGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAA > SRR4302542.5807077/1‑94 (MQ=60)
GAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAA < SRR4302542.5040017/94‑1 (MQ=60)
AGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAG < SRR4302542.961966/94‑1 (MQ=60)
ATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTA < SRR4302542.5232637/94‑1 (MQ=60)
TTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAA < SRR4302542.1140478/94‑1 (MQ=60)
TGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGTATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAA < SRR4302542.6270624/94‑1 (MQ=60)
TGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTANN > SRR4302542.359084/1‑94 (MQ=60)
GCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAC < SRR4302542.5449834/94‑1 (MQ=60)
GCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAC < SRR4302542.3969950/94‑1 (MQ=60)
CTGCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTACCCTGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACC < SRR4302542.4648186/94‑1 (MQ=60)
CTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACC < SRR4302542.3919422/94‑1 (MQ=60)
CTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACC > SRR4302542.2710048/1‑94 (MQ=60)
CTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACC < SRR4302542.4122337/94‑1 (MQ=60)
CCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCT < SRR4302542.3756289/94‑1 (MQ=60)
CCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCT < SRR4302542.4041066/94‑1 (MQ=60)
CCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCT < SRR4302542.1001045/94‑1 (MQ=60)
CAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTT > SRR4302542.4466778/1‑94 (MQ=60)
CAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTT < SRR4302542.464221/94‑1 (MQ=60)
CAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGCAAACCCTT > SRR4302542.814186/1‑94 (MQ=60)
AGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTC > SRR4302542.4411946/1‑94 (MQ=60)
GGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCT < SRR4302542.2051345/94‑1 (MQ=60)
GCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTG > SRR4302542.851980/1‑94 (MQ=60)
CGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGG > SRR4302542.7067915/1‑94 (MQ=60)
CGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGG > SRR4302542.2785015/1‑94 (MQ=60)
CGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCACTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGG > SRR4302542.2783578/1‑94 (MQ=60)
GGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGC < SRR4302542.5150339/94‑1 (MQ=60)
GTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCG < SRR4302542.3553560/94‑1 (MQ=60)
TGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGT < SRR4302542.5977892/94‑1 (MQ=60)
AAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTA > SRR4302542.3929746/1‑94 (MQ=60)
AAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAT > SRR4302542.1062104/1‑94 (MQ=60)
AAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAT < SRR4302542.1152740/94‑1 (MQ=60)
AAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGAGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAT < SRR4302542.7274831/94‑1 (MQ=60)
AAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATC < SRR4302542.1699478/94‑1 (MQ=60)
AATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCA > SRR4302542.5200539/1‑94 (MQ=60)
ATCCGGGTTCGTTGTGAAAGCGTCCCCGGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAA < SRR4302542.758190/94‑1 (MQ=60)
TCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAAC < SRR4302542.256364/94‑1 (MQ=60)
TCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAAC > SRR4302542.5457822/1‑94 (MQ=60)
TCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAAC < SRR4302542.3857554/94‑1 (MQ=60)
CCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACT < SRR4302542.2938390/94‑1 (MQ=60)
GGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGC > SRR4302542.6131960/1‑94 (MQ=60)
GGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGC < SRR4302542.1544723/94‑1 (MQ=60)
GGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGC > SRR4302542.6517593/1‑94 (MQ=60)
GGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCA < SRR4302542.464824/94‑1 (MQ=60)
TTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT > SRR4302542.6134267/1‑94 (MQ=60)
TTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT < SRR4302542.5645370/94‑1 (MQ=60)
TCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG < SRR4302542.3097768/94‑1 (MQ=60)
TCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG < SRR4302542.7513442/94‑1 (MQ=60)
TCGTTATGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG < SRR4302542.653951/94‑1 (MQ=60)
CGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGG < SRR4302542.5589601/94‑1 (MQ=60)
CGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGG < SRR4302542.3715301/94‑1 (MQ=60)
GTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGC > SRR4302542.3535030/1‑94 (MQ=60)
GTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGC > SRR4302542.7390635/1‑94 (MQ=60)
GTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGC < SRR4302542.4279109/94‑1 (MQ=60)
GTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGC > SRR4302542.6153111/1‑94 (MQ=60)
TTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCA < SRR4302542.688017/94‑1 (MQ=60)
TGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAT > SRR4302542.1925567/1‑94 (MQ=60)
TGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAT > SRR4302542.6808571/1‑94 (MQ=60)
TGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAT > SRR4302542.4270379/1‑94 (MQ=60)
GTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATC < SRR4302542.6956841/94‑1 (MQ=60)
AAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGG < SRR4302542.513078/94‑1 (MQ=60)
AAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGG > SRR4302542.2703648/1‑94 (MQ=60)
AAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGG > SRR4302542.6745951/1‑94 (MQ=60)
AAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGG < SRR4302542.605590/94‑1 (MQ=60)
AAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGG < SRR4302542.7505474/94‑1 (MQ=60)
AAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGG < SRR4302542.142556/94‑1 (MQ=60)
AAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGT < SRR4302542.6508828/94‑1 (MQ=60)
AAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGT > SRR4302542.1051910/1‑94 (MQ=60)
AAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGT < SRR4302542.4857819/94‑1 (MQ=60)
AGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG > SRR4302542.6894342/1‑94 (MQ=60)
AGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG > SRR4302542.6136383/1‑94 (MQ=60)
GCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGC < SRR4302542.1363722/94‑1 (MQ=60)
GTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGC > SRR4302542.5122733/1‑94 (MQ=60)
GTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGC > SRR4302542.5385428/1‑94 (MQ=60)
|
AACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGC > NC_000913/3878339‑3878525
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |