Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,881,913 |
G→A |
intergenic (‑556/‑52) |
dnaA ← / → rpmH |
DnaA/50S ribosomal subunit protein L34 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,881,913 | 0 | G | A | 88.4%
| 892.2
/ 66.1
| 301 | intergenic (‑556/‑52) | dnaA/rpmH | DnaA/50S ribosomal subunit protein L34 |
| Reads supporting (aligned to +/- strand): ref base G (16/19); new base A (132/134); total (148/153) |
| Fisher's exact test for biased strand distribution p-value = 7.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.71e-03 |
Only 100 of 311 total aligned reads displayed.
AAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCG > NC_000913/3881822‑3882005
|
aGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCCCCCATGACTTCGGTGTCCATCGTTTCATTTTTcgacg < 1:4502154/93‑1 (MQ=255)
ggAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTcggcgg > 1:519129/1‑93 (MQ=255)
gAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGa < 1:4697322/93‑1 (MQ=255)
aaaGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGat > 2:837288/1‑93 (MQ=255)
aaaGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGat < 2:1136568/93‑1 (MQ=255)
aaGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGata < 1:817266/93‑1 (MQ=255)
aaGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGata > 2:336360/1‑93 (MQ=255)
agagAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGatat > 2:6480921/1‑93 (MQ=255)
gagaATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATc > 1:2989874/1‑93 (MQ=255)
gaATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCa > 2:6438297/1‑93 (MQ=255)
aaTTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCaa > 1:5998396/1‑93 (MQ=255)
aaTTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCaa > 1:5492274/1‑93 (MQ=255)
aTTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAAt > 2:5369485/1‑93 (MQ=255)
ttGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATa < 1:3575498/93‑1 (MQ=255)
gACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATaaa < 2:3641390/93‑1 (MQ=255)
gACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATaaa < 1:5296443/93‑1 (MQ=255)
gACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAACCCCCCAGGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATaaa < 1:1161845/93‑1 (MQ=255)
cTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGc > 2:4440993/1‑93 (MQ=255)
ccGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCCCCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCa < 1:3195966/93‑1 (MQ=255)
ccGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCa < 1:109772/93‑1 (MQ=255)
ccGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCa < 1:1005473/93‑1 (MQ=255)
ggAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCAtt > 2:449717/1‑93 (MQ=255)
ggAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCAtt < 1:7089010/93‑1 (MQ=255)
gAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTg > 1:6904864/1‑93 (MQ=255)
aGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGa < 1:6478826/93‑1 (MQ=255)
gtgtACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGaa < 2:4212818/93‑1 (MQ=255)
gtgtACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGaa > 2:3797541/1‑93 (MQ=255)
tgtACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAAt > 1:3304035/1‑93 (MQ=255)
gtACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAAtt < 2:4144486/93‑1 (MQ=255)
gtACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAAtt < 2:7211513/93‑1 (MQ=255)
gtACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAAtt > 1:197611/1‑93 (MQ=255)
tACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAAttt > 1:6729068/1‑93 (MQ=255)
aCAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTa < 2:5488024/93‑1 (MQ=255)
aaTTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTAtt < 2:5889372/93‑1 (MQ=255)
aaTTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTAtt > 2:3948492/1‑93 (MQ=255)
ttattaCAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCa < 2:2433479/93‑1 (MQ=255)
ttattaCAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCa > 1:5383889/1‑93 (MQ=255)
attaCAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAg > 2:2620636/1‑93 (MQ=255)
ttaCAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGt < 1:5635677/93‑1 (MQ=255)
taCAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGtt < 2:4054060/93‑1 (MQ=255)
cAATCCGGCCTCTTTAATCACCCATGCCTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTa < 1:6183135/93‑1 (MQ=255)
cAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTa < 2:4896198/93‑1 (MQ=255)
cAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTa < 1:4901335/93‑1 (MQ=255)
aTCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAgg > 1:5872019/1‑93 (MQ=255)
aTCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAgg < 2:7313444/93‑1 (MQ=255)
tCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGt > 1:1615067/1‑93 (MQ=255)
tCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGt > 1:4026545/1‑93 (MQ=255)
ccGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTa < 2:3198555/93‑1 (MQ=255)
ccGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTa < 1:3901940/93‑1 (MQ=255)
gCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGaa > 1:568941/1‑93 (MQ=255)
gCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGaa < 1:2479405/93‑1 (MQ=255)
gCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGaa > 2:2172397/1‑93 (MQ=255)
ctctTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAAt > 1:5975080/1‑93 (MQ=255)
tctTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATc < 1:2860610/93‑1 (MQ=255)
ctTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCg > 1:145066/1‑93 (MQ=255)
tttAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGc < 1:3057642/93‑1 (MQ=255)
aaTCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCAt < 2:2304888/93‑1 (MQ=255)
aaTCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCAt < 1:3095900/93‑1 (MQ=255)
aTCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATg > 1:1370262/1‑93 (MQ=255)
aTCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATg > 1:6570689/1‑93 (MQ=255)
tCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGa < 1:3433674/93‑1 (MQ=255)
aCCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGaaa > 2:5220344/1‑93 (MQ=255)
aCCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGaaa < 2:6861632/93‑1 (MQ=255)
cccATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAAc < 1:4165264/93‑1 (MQ=255)
cccATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAAc > 1:2416252/1‑93 (MQ=255)
ccATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACg > 2:7437378/1‑93 (MQ=255)
aTGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCa < 2:3095352/93‑1 (MQ=255)
tgacTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCAc > 1:1723852/4‑93 (MQ=255)
gacTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACt < 1:7417884/91‑1 (MQ=255)
gacTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACt > 2:4727361/3‑93 (MQ=255)
acTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACtt > 1:3826483/2‑93 (MQ=255)
cTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACttt > 2:5650795/1‑93 (MQ=255)
ttCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACtttt < 2:205295/93‑1 (MQ=255)
tCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTc < 1:4329278/93‑1 (MQ=255)
ggTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCaa > 1:4415384/1‑93 (MQ=255)
ggTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCaa < 2:2890434/93‑1 (MQ=255)
ggTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCaa < 2:5701109/93‑1 (MQ=255)
gtgtCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAAc < 2:171280/93‑1 (MQ=255)
tgtCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAAcc < 1:4817586/93‑1 (MQ=255)
tgtCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAAcc < 2:6689931/93‑1 (MQ=255)
ccATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTc > 1:6342751/1‑93 (MQ=255)
ccATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTc < 1:963246/93‑1 (MQ=255)
ccATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTc < 2:5970296/93‑1 (MQ=255)
ccATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTc < 2:4638971/93‑1 (MQ=255)
cATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCt > 1:6064894/1‑93 (MQ=255)
cATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCt > 2:3271120/1‑93 (MQ=255)
aTCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTg < 1:2168435/93‑1 (MQ=255)
cGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTa < 2:626220/93‑1 (MQ=255)
gTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTAc < 2:3583553/93‑1 (MQ=255)
tttCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACt > 1:7341899/1‑93 (MQ=255)
tttCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACt > 1:7296601/1‑93 (MQ=255)
ttCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTg > 2:1353506/1‑93 (MQ=255)
ttCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTg > 2:618699/1‑93 (MQ=255)
ttCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTg > 1:2059891/1‑93 (MQ=255)
tCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGa < 2:2533617/93‑1 (MQ=255)
cATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGaa < 2:4569207/93‑1 (MQ=255)
tttCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAgcgc < 2:1588618/93‑1 (MQ=255)
tttCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAgcgc < 2:2714490/93‑1 (MQ=255)
ttCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCa > 2:4283763/1‑93 (MQ=255)
gcggATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCg > 1:2656627/1‑93 (MQ=255)
|
AAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCG > NC_000913/3881822‑3882005
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCG > NC_000913/3881820‑3882005
|
ATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGA > SRR4302542.3041113/1‑94 (MQ=60)
ATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGA > SRR4302542.522800/1‑94 (MQ=60)
ATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGA > SRR4302542.5803234/1‑94 (MQ=60)
TAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGAC < SRR4302542.4363979/94‑1 (MQ=60)
TAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGAC < SRR4302542.7497692/94‑1 (MQ=60)
AAGGAAAGAGAATTGTCTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCTCCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCG < SRR4302542.6499852/94‑1 (MQ=60)
AAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATACGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACG > SRR4302542.2038894/1‑94 (MQ=60)
AGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCCCCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGG < SRR4302542.4546303/94‑1 (MQ=60)
AGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGG > SRR4302542.523623/1‑94 (MQ=60)
AGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGG > SRR4302542.1176926/1‑94 (MQ=60)
GAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGAT < SRR4302542.4743180/94‑1 (MQ=60)
GAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGAT < SRR4302542.5659823/94‑1 (MQ=60)
AAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATA < SRR4302542.4665419/94‑1 (MQ=60)
AAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATAT > SRR4302542.4421580/1‑94 (MQ=60)
AAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATAT < SRR4302542.2656898/94‑1 (MQ=60)
AAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATAT < SRR4302542.824329/94‑1 (MQ=60)
AAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATAT < SRR4302542.170965/94‑1 (MQ=60)
AAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATAT < SRR4302542.4094031/94‑1 (MQ=60)
AAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATAT > SRR4302542.4182377/1‑94 (MQ=60)
AGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATC > SRR4302542.6996297/1‑94 (MQ=60)
AGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATC > SRR4302542.3749841/1‑94 (MQ=60)
AGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATC > SRR4302542.3018489/1‑94 (MQ=60)
AGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCA < SRR4302542.2740838/94‑1 (MQ=60)
GAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAA > SRR4302542.6056489/1‑94 (MQ=60)
GAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAA > SRR4302542.5545624/1‑94 (MQ=60)
AATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAAT < SRR4302542.1436233/94‑1 (MQ=60)
ATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATA < SRR4302542.1474731/94‑1 (MQ=60)
TTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAA < SRR4302542.3608870/94‑1 (MQ=60)
GACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAG > SRR4302542.6637378/1‑94 (MQ=60)
GACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAG < SRR4302542.5317026/94‑1 (MQ=60)
GACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAG < SRR4302542.5347913/94‑1 (MQ=60)
GACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAACCCCCCAGGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAG < SRR4302542.1171824/94‑1 (MQ=60)
CTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCC < SRR4302542.3241395/94‑1 (MQ=60)
CTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCC > SRR4302542.6931370/1‑94 (MQ=60)
CCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCCCCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCAT < SRR4302542.3226228/94‑1 (MQ=60)
CCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCAT > SRR4302542.3035189/1‑94 (MQ=60)
CCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCAT < SRR4302542.1014132/94‑1 (MQ=60)
CCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCAT < SRR4302542.110671/94‑1 (MQ=60)
CGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATT > SRR4302542.5501912/1‑94 (MQ=60)
CGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATT > SRR4302542.3342921/1‑94 (MQ=60)
GGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTG < SRR4302542.4774088/94‑1 (MQ=60)
GGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTG > SRR4302542.6972652/1‑94 (MQ=60)
GGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTG > SRR4302542.1101832/1‑94 (MQ=60)
GGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTG < SRR4302542.7158566/94‑1 (MQ=60)
AGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAA < SRR4302542.6542652/94‑1 (MQ=60)
AGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAA < SRR4302542.7462906/94‑1 (MQ=60)
GTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAAT < SRR4302542.5100636/94‑1 (MQ=60)
GTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAAT > SRR4302542.3335198/1‑94 (MQ=60)
GTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAAT > SRR4302542.6054960/1‑94 (MQ=60)
GTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAAT > SRR4302542.402547/1‑94 (MQ=60)
GTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAAT < SRR4302542.291020/94‑1 (MQ=60)
TGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATT < SRR4302542.3113168/94‑1 (MQ=60)
TGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATT > SRR4302542.199290/1‑94 (MQ=60)
TGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATT > SRR4302542.6576890/1‑94 (MQ=60)
TGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATT > SRR4302542.6380549/1‑94 (MQ=60)
GTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTT > SRR4302542.6795312/1‑94 (MQ=60)
GTACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTT > SRR4302542.7390490/1‑94 (MQ=60)
ACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTAT < SRR4302542.4822560/94‑1 (MQ=60)
ACAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTAT > SRR4302542.2641141/1‑94 (MQ=60)
CAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATT > SRR4302542.4289515/1‑94 (MQ=60)
CAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATT < SRR4302542.528750/94‑1 (MQ=60)
CAATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATT < SRR4302542.4529154/94‑1 (MQ=60)
AATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTC < SRR4302542.6550474/94‑1 (MQ=60)
ATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCA < SRR4302542.6360557/94‑1 (MQ=60)
ATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCA > SRR4302542.3328840/1‑94 (MQ=60)
ATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCA < SRR4302542.2101311/94‑1 (MQ=60)
ATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCA > SRR4302542.5436190/1‑94 (MQ=60)
ATTATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCA > SRR4302542.6234365/1‑94 (MQ=60)
TATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAG < SRR4302542.5380089/94‑1 (MQ=60)
TATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAG < SRR4302542.3107371/94‑1 (MQ=60)
ATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGT > SRR4302542.2477622/1‑94 (MQ=60)
ATTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGT > SRR4302542.3048455/1‑94 (MQ=60)
TTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTT < SRR4302542.6715118/94‑1 (MQ=60)
TTACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTT < SRR4302542.5690393/94‑1 (MQ=60)
TACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTT < SRR4302542.6064245/94‑1 (MQ=60)
TACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTT < SRR4302542.2370399/94‑1 (MQ=60)
ACAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTA > SRR4302542.1162545/1‑94 (MQ=60)
CAATCCGGCCTCTTTAATCACCCATGCCTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAG < SRR4302542.6243128/94‑1 (MQ=60)
CAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAG < SRR4302542.1915056/94‑1 (MQ=60)
CAATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAG < SRR4302542.4948975/94‑1 (MQ=60)
AATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGG > SRR4302542.5928947/1‑94 (MQ=60)
ATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGT < SRR4302542.4562877/94‑1 (MQ=60)
ATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGT > SRR4302542.5213947/1‑94 (MQ=60)
ATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGT > SRR4302542.1629018/1‑94 (MQ=60)
ATCCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGT > SRR4302542.4066267/1‑94 (MQ=60)
CCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAG > SRR4302542.7317141/1‑94 (MQ=60)
CCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAG > SRR4302542.5981546/1‑94 (MQ=60)
CCGGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAG < SRR4302542.3940458/94‑1 (MQ=60)
GGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAA > SRR4302542.573832/1‑94 (MQ=60)
GGCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAA > SRR4302542.4374062/1‑94 (MQ=60)
GCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAA < SRR4302542.3550081/94‑1 (MQ=60)
GCCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAA < SRR4302542.2503451/94‑1 (MQ=60)
CCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAAT > SRR4302542.6032912/1‑94 (MQ=60)
CCTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAAT > SRR4302542.4896060/1‑94 (MQ=60)
CTCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATC > SRR4302542.5792187/1‑94 (MQ=60)
TCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCG < SRR4302542.620367/94‑1 (MQ=60)
TCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCG < SRR4302542.2888092/94‑1 (MQ=60)
TCTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCG > SRR4302542.146276/1‑94 (MQ=60)
CTTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGC > SRR4302542.606657/1‑94 (MQ=60)
TTTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCC < SRR4302542.3086807/94‑1 (MQ=60)
TTAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCA > SRR4302542.7173252/1‑94 (MQ=60)
TAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCAT > SRR4302542.3144710/1‑94 (MQ=60)
TAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCAT > SRR4302542.7031075/1‑94 (MQ=60)
TAATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCAT < SRR4302542.7388848/94‑1 (MQ=60)
AATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATG > SRR4302542.4020135/1‑94 (MQ=60)
AATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATG < SRR4302542.3125337/94‑1 (MQ=60)
AATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATG > SRR4302542.1382109/1‑94 (MQ=60)
AATCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATG > SRR4302542.6635439/1‑94 (MQ=60)
ATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGA < SRR4302542.1499447/94‑1 (MQ=60)
TCACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAA < SRR4302542.3465819/94‑1 (MQ=60)
CACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAA < SRR4302542.3343487/94‑1 (MQ=60)
CACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAA > SRR4302542.916741/1‑94 (MQ=60)
ACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAAC < SRR4302542.3451361/94‑1 (MQ=60)
ACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAAC > SRR4302542.5538388/1‑94 (MQ=60)
ACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAAC < SRR4302542.2246195/94‑1 (MQ=60)
ACCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAAC > SRR4302542.2439746/1‑94 (MQ=60)
CCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACG < SRR4302542.1032677/94‑1 (MQ=60)
CCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACG < SRR4302542.4206340/94‑1 (MQ=60)
CCCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACG > SRR4302542.1876060/1‑94 (MQ=60)
CCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGC > SRR4302542.5372667/1‑94 (MQ=60)
CCATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGC < SRR4302542.5632765/94‑1 (MQ=60)
CATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCA > SRR4302542.6959590/1‑94 (MQ=60)
CATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCA > SRR4302542.284310/1‑94 (MQ=60)
ATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCAC > SRR4302542.1738816/1‑94 (MQ=60)
ATGACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCAC > SRR4302542.3188332/1‑94 (MQ=60)
GACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTT < SRR4302542.7490467/94‑1 (MQ=60)
GACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTT > SRR4302542.3864340/1‑94 (MQ=60)
ACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTT > SRR4302542.806077/1‑94 (MQ=60)
ACTTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTT < SRR4302542.3879289/94‑1 (MQ=60)
TTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTC > SRR4302542.4884268/1‑94 (MQ=60)
TTCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTC < SRR4302542.4529264/94‑1 (MQ=60)
TCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCA < SRR4302542.6845995/94‑1 (MQ=60)
TCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCA < SRR4302542.4371837/94‑1 (MQ=60)
TCGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCA > SRR4302542.3885087/1‑94 (MQ=60)
CGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAA < SRR4302542.5736473/94‑1 (MQ=60)
CGGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAA > SRR4302542.4458746/1‑94 (MQ=60)
GGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCCTTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAAC < SRR4302542.7446584/94‑1 (MQ=60)
GGTGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAAC < SRR4302542.3011985/94‑1 (MQ=60)
TGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCG < SRR4302542.4864536/94‑1 (MQ=60)
TGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCG > SRR4302542.4677301/1‑94 (MQ=60)
TGTCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCG > SRR4302542.6004638/1‑94 (MQ=60)
TCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTC > SRR4302542.4327266/1‑94 (MQ=60)
TCCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTC > SRR4302542.6405239/1‑94 (MQ=60)
CCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCT < SRR4302542.958242/94‑1 (MQ=60)
CCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCT < SRR4302542.971517/94‑1 (MQ=60)
CCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCT > SRR4302542.3647620/1‑94 (MQ=60)
CCATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCT > SRR4302542.6123639/1‑94 (MQ=60)
CATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTG > SRR4302542.6475948/1‑94 (MQ=60)
ATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGT > SRR4302542.1121684/1‑94 (MQ=60)
ATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGT < SRR4302542.2187109/94‑1 (MQ=60)
ATCGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGT < SRR4302542.2103613/94‑1 (MQ=60)
CGTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCTCCATGAAACGCACTTTTCAACCGTCTGTAC < SRR4302542.2456615/94‑1 (MQ=60)
GTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACT < SRR4302542.2331495/94‑1 (MQ=60)
GTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACT > SRR4302542.7368104/1‑94 (MQ=60)
GTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACT > SRR4302542.1382069/1‑94 (MQ=60)
GTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACT > SRR4302542.7413812/1‑94 (MQ=60)
GTTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACT > SRR4302542.603870/1‑94 (MQ=60)
TTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTG < SRR4302542.1439585/94‑1 (MQ=60)
TTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTG > SRR4302542.5817941/1‑94 (MQ=60)
TTTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTG > SRR4302542.2077691/1‑94 (MQ=60)
TTCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGA > SRR4302542.199855/1‑94 (MQ=60)
TCATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAA > SRR4302542.5895907/1‑94 (MQ=60)
CATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAG < SRR4302542.5715195/94‑1 (MQ=60)
CATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAG > SRR4302542.761379/1‑94 (MQ=60)
ATTTTTCGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGC < SRR4302542.1669174/94‑1 (MQ=60)
TTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAA < SRR4302542.3507538/94‑1 (MQ=60)
CGACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACC > SRR4302542.4392861/1‑94 (MQ=60)
GGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCG > SRR4302542.2682272/1‑94 (MQ=60)
GACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCG > SRR4302542.7603501/1‑94 (MQ=60)
GACGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCG > SRR4302542.3846730/1‑94 (MQ=60)
|
ATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCG > NC_000913/3881820‑3882005
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
