Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,887,809 A→G intergenic (+35/‑56) b3708 → / → tnaB tryptophanase/low affinity tryptophan permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,887,8090AG85.0% 721.2 / 111.8 307intergenic (+35/‑56)b3708/tnaBtryptophanase/low affinity tryptophan permease
Reads supporting (aligned to +/- strand):  ref base A (19/27);  new base G (128/132);  total (148/159)
Fisher's exact test for biased strand distribution p-value = 3.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 307 total aligned reads displayed.

TTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCATT  >  NC_000913/3887718‑3887899
                                                                                           |                                                                                          
 ttACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGct                                                                                          >  2:5888863/1‑93 (MQ=255)
    cgtacgAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGctctc                                                                                       <  2:7072841/93‑1 (MQ=255)
     gtacgAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGctctct                                                                                      <  2:521691/93‑1 (MQ=255)
     gtacgAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGctctct                                                                                      <  1:6824668/93‑1 (MQ=255)
     gtacgAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGctctct                                                                                      <  1:7033394/93‑1 (MQ=255)
     gtacgAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCActctct                                                                                      <  1:2541058/93‑1 (MQ=255)
       acgAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTa                                                                                    <  2:1360241/93‑1 (MQ=255)
       acgAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTa                                                                                    <  1:2725155/93‑1 (MQ=255)
         gAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTAcc                                                                                  <  1:115371/93‑1 (MQ=255)
           aCCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCt                                                                                >  2:678360/1‑93 (MQ=255)
            ccGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTa                                                                               <  1:4299976/93‑1 (MQ=255)
              gAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACa                                                                             >  1:4174271/1‑93 (MQ=255)
              gAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACa                                                                             >  1:5551294/1‑93 (MQ=255)
              gAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACa                                                                             >  2:4200244/1‑93 (MQ=255)
               aaaGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACAt                                                                            >  1:1944915/1‑93 (MQ=255)
                 aGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATcc                                                                          <  1:5767573/93‑1 (MQ=255)
                 aGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATcc                                                                          <  1:879831/93‑1 (MQ=255)
                  gTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCt                                                                         <  2:5051254/93‑1 (MQ=255)
                   tATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTc                                                                        >  1:1724534/1‑93 (MQ=255)
                    aTTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCa                                                                       >  1:5969963/1‑93 (MQ=255)
                     ttGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCaa                                                                      >  1:2090300/1‑93 (MQ=255)
                     ttGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCaa                                                                      >  1:727047/1‑93 (MQ=255)
                      tGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAAt                                                                     <  1:6525493/93‑1 (MQ=255)
                      tGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAAt                                                                     <  1:805126/93‑1 (MQ=255)
                       gCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATa                                                                    >  2:1647320/1‑93 (MQ=255)
                       gCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATa                                                                    <  2:5403884/93‑1 (MQ=255)
                         gTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAAc                                                                  <  2:4428732/93‑1 (MQ=255)
                          tCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACa                                                                 <  1:4591694/93‑1 (MQ=255)
                          tCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACa                                                                 >  2:3914187/1‑93 (MQ=255)
                            aCTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACaaa                                                               <  2:1876376/93‑1 (MQ=255)
                             cTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACaaaa                                                              >  2:7382566/1‑93 (MQ=255)
                              ttCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACaaaaa                                                             >  2:317/1‑93 (MQ=255)
                              ttCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACaaaaa                                                             >  1:1670169/1‑93 (MQ=255)
                              ttCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACaaaaa                                                             <  2:1800222/93‑1 (MQ=255)
                              ttCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACaaaaa                                                             <  2:6041489/93‑1 (MQ=255)
                                cACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATa                                                           <  1:2312780/93‑1 (MQ=255)
                                 aCCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAg                                                          >  1:3543579/1‑93 (MQ=255)
                                  ccGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGc                                                         <  1:2937063/93‑1 (MQ=255)
                                  ccGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGc                                                         >  1:3213422/1‑93 (MQ=255)
                                  ccGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGc                                                         <  2:3695631/93‑1 (MQ=255)
                                   cGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGcc                                                        <  1:4832189/93‑1 (MQ=255)
                                   cGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGcc                                                        >  1:1517767/1‑93 (MQ=255)
                                    gCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCt                                                       >  2:4795450/1‑93 (MQ=255)
                                    gCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCt                                                       <  1:7415616/93‑1 (MQ=255)
                                    gCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCt                                                       <  2:5511890/93‑1 (MQ=255)
                                     cAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCtt                                                      <  1:63081/93‑1 (MQ=255)
                                       aaaCTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTcc                                                    >  1:3677883/1‑93 (MQ=255)
                                       aaaCTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTcc                                                    <  1:4429580/93‑1 (MQ=255)
                                         aCTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCctc                                                  >  1:5807403/1‑93 (MQ=255)
                                         aCTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCctc                                                  <  1:4700394/93‑1 (MQ=255)
                                          cTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCctct                                                 <  2:704437/93‑1 (MQ=255)
                                            tAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTaa                                               >  2:4348105/1‑93 (MQ=255)
                                            tAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTaa                                               >  2:2681794/1‑93 (MQ=255)
                                            tAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTaa                                               <  2:6255548/93‑1 (MQ=255)
                                             aaaGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTaaa                                              <  1:5889853/93‑1 (MQ=255)
                                             aaaGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTaaa                                              <  2:5288723/93‑1 (MQ=255)
                                              aagaagTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAg                                             >  2:4758788/1‑93 (MQ=255)
                                              aagaagTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAg                                             >  1:7193157/1‑93 (MQ=255)
                                                gaagTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGt                                           <  1:2158926/93‑1 (MQ=255)
                                                gaagTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGt                                           <  1:6965890/93‑1 (MQ=255)
                                                gaagTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGt                                           <  2:5611904/93‑1 (MQ=255)
                                                gaagTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGt                                           >  2:2389570/1‑93 (MQ=255)
                                                  agTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTgg                                         <  2:6121026/93‑1 (MQ=255)
                                                    tttAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGca                                       >  1:3499653/1‑93 (MQ=255)
                                                      taattaatACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGcatc                                     >  2:6714561/1‑93 (MQ=255)
                                                      taattaatACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGcatc                                     <  1:3959115/93‑1 (MQ=255)
                                                       aattaatACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGcatca                                    <  1:1175141/93‑1 (MQ=255)
                                                       aattaatACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGcatca                                    >  2:3475693/1‑93 (MQ=255)
                                                       aattaatACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGcatca                                    <  1:663804/93‑1 (MQ=255)
                                                       aattaatACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGcatca                                    <  1:4904321/93‑1 (MQ=255)
                                                          taatACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGa                                 <  2:838289/93‑1 (MQ=255)
                                                             tactacAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTg                              >  2:2779395/1‑93 (MQ=255)
                                                             tactacAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTg                              >  2:2103365/1‑93 (MQ=255)
                                                             tactacAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTg                              >  1:22822/1‑93 (MQ=255)
                                                               ctacAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGAt                            <  1:5392889/93‑1 (MQ=255)
                                                                tacAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATc                           >  2:3518535/1‑93 (MQ=255)
                                                                tacAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATc                           >  1:5021683/1‑93 (MQ=255)
                                                                  cAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCaa                         >  2:6587258/1‑93 (MQ=255)
                                                                  cAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCaa                         <  1:6570274/93‑1 (MQ=255)
                                                                  cAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCaa                         <  2:2252986/93‑1 (MQ=255)
                                                                   agagTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAg                        <  1:182512/93‑1 (MQ=255)
                                                                   agagTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAg                        >  1:4134675/1‑93 (MQ=255)
                                                                    gagTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGc                       <  1:962731/93‑1 (MQ=255)
                                                                     agTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCt                      <  2:5122222/93‑1 (MQ=255)
                                                                       tGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGa                    <  1:138784/93‑1 (MQ=255)
                                                                       tGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGa                    <  1:5664202/93‑1 (MQ=255)
                                                                           tataAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGaaaaa                <  1:5192078/93‑1 (MQ=255)
                                                                           tataAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGaaaaa                >  2:3117502/1‑93 (MQ=255)
                                                                                ggATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCa           >  2:4622052/1‑93 (MQ=255)
                                                                                ggATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCa           <  2:1097057/93‑1 (MQ=255)
                                                                                ggATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCa           <  1:3625010/93‑1 (MQ=255)
                                                                                  aTGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAATAAGCAct         >  2:1943074/1‑93 (MQ=255)
                                                                                   tGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCActc        <  1:5283243/93‑1 (MQ=255)
                                                                                   tGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCActc        >  2:1423029/1‑93 (MQ=255)
                                                                                    gTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCActct       >  1:4069841/1‑93 (MQ=255)
                                                                                    gTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCActct       <  1:2984024/93‑1 (MQ=255)
                                                                                      tAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGc     <  1:3034635/93‑1 (MQ=255)
                                                                                      tAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGc     <  2:2959925/93‑1 (MQ=255)
                                                                                       aGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCa    <  2:2080679/93‑1 (MQ=255)
                                                                                        gCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCAt   >  1:7340457/1‑93 (MQ=255)
                                                                                           |                                                                                          
TTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCATT  >  NC_000913/3887718‑3887899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCATTTTG  >  NC_000913/3887716‑3887902
                                                                                             |                                                                                             
CCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCG                                                                                               >  SRR4302542.679515/1‑94 (MQ=60)
 CTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGC                                                                                              >  SRR4302542.4000759/1‑94 (MQ=60)
 CTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGC                                                                                              >  SRR4302542.1417799/1‑94 (MQ=60)
  TTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCT                                                                                             >  SRR4302542.3097352/1‑94 (MQ=60)
  TTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACT                                                                                             <  SRR4302542.580917/94‑1 (MQ=60)
   TTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTC                                                                                            >  SRR4302542.3626936/1‑94 (MQ=60)
   TTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTC                                                                                            >  SRR4302542.4166705/1‑94 (MQ=60)
    TACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCT                                                                                           <  SRR4302542.5808361/94‑1 (MQ=60)
     ACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTC                                                                                          <  SRR4302542.3008869/94‑1 (MQ=60)
       GTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTT                                                                                        <  SRR4302542.7102496/94‑1 (MQ=60)
       GTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTT                                                                                        <  SRR4302542.6891742/94‑1 (MQ=60)
       GTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTT                                                                                        <  SRR4302542.6616109/94‑1 (MQ=60)
       GTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTT                                                                                        <  SRR4302542.2565691/94‑1 (MQ=60)
         ACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTAC                                                                                      >  SRR4302542.7121240/1‑94 (MQ=60)
         ACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTAC                                                                                      <  SRR4302542.2751447/94‑1 (MQ=60)
          CGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACC                                                                                     >  SRR4302542.5987419/1‑94 (MQ=60)
           GAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCC                                                                                    <  SRR4302542.4648487/94‑1 (MQ=60)
           GAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCC                                                                                    <  SRR4302542.116323/94‑1 (MQ=60)
           GAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCC                                                                                    <  SRR4302542.7089449/94‑1 (MQ=60)
            AACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCT                                                                                   >  SRR4302542.5874322/1‑94 (MQ=60)
            AACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCT                                                                                   <  SRR4302542.231303/94‑1 (MQ=60)
             ACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTA                                                                                  >  SRR4302542.2847945/1‑94 (MQ=60)
             ACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTA                                                                                  >  SRR4302542.6579897/1‑94 (MQ=60)
              CCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTAC                                                                                 >  SRR4302542.1884649/1‑94 (MQ=60)
              CCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTAC                                                                                 <  SRR4302542.4342261/94‑1 (MQ=60)
               CGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACA                                                                                <  SRR4302542.585523/94‑1 (MQ=60)
               CGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACA                                                                                >  SRR4302542.4215440/1‑94 (MQ=60)
               CGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACA                                                                                >  SRR4302542.5605231/1‑94 (MQ=60)
                GAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACAT                                                                               <  SRR4302542.1526506/94‑1 (MQ=60)
                GAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACAT                                                                               <  SRR4302542.6638377/94‑1 (MQ=60)
                GAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACAT                                                                               >  SRR4302542.6099700/1‑94 (MQ=60)
                GAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACAT                                                                               >  SRR4302542.1961739/1‑94 (MQ=60)
                  AAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCC                                                                             >  SRR4302542.2534770/1‑94 (MQ=60)
                  AAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCC                                                                             >  SRR4302542.7470655/1‑94 (MQ=60)
                   AGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCT                                                                            <  SRR4302542.5823564/94‑1 (MQ=60)
                   AGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCT                                                                            >  SRR4302542.3039036/1‑94 (MQ=60)
                   AGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCT                                                                            <  SRR4302542.887432/94‑1 (MQ=60)
                   AGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCT                                                                            <  SRR4302542.3863204/94‑1 (MQ=60)
                    GTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTC                                                                           >  SRR4302542.1739504/1‑94 (MQ=60)
                     TATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCA                                                                          >  SRR4302542.2149596/1‑94 (MQ=60)
                     TATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCA                                                                          >  SRR4302542.6027747/1‑94 (MQ=60)
                      ATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAA                                                                         <  SRR4302542.848119/94‑1 (MQ=60)
                      ATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAA                                                                         >  SRR4302542.2108342/1‑94 (MQ=60)
                      ATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAA                                                                         <  SRR4302542.4234561/94‑1 (MQ=60)
                      ATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAA                                                                         >  SRR4302542.733318/1‑94 (MQ=60)
                      ATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAA                                                                         <  SRR4302542.6529691/94‑1 (MQ=60)
                       TTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAAT                                                                        <  SRR4302542.5385454/94‑1 (MQ=60)
                        TGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATA                                                                       <  SRR4302542.812049/94‑1 (MQ=60)
                        TGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATA                                                                       <  SRR4302542.6589796/94‑1 (MQ=60)
                         GCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAA                                                                      <  SRR4302542.870763/94‑1 (MQ=60)
                          GGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGGGGCTAT‑AGGATGTTAGCCCCTTTTTTTCCCTAAATCCTCAATAACA                                                                    >  SRR4302542.3693211/1‑94 (MQ=60)
                          CGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAAC                                                                     >  SRR4302542.3711822/1‑94 (MQ=60)
                           GTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACA                                                                    <  SRR4302542.217825/94‑1 (MQ=60)
                           GTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACA                                                                    <  SRR4302542.7350667/94‑1 (MQ=60)
                           GTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACA                                                                    >  SRR4302542.2632133/1‑94 (MQ=60)
                           GTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACA                                                                    <  SRR4302542.2104965/94‑1 (MQ=60)
                            TCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAA                                                                   <  SRR4302542.4636602/94‑1 (MQ=60)
                            TCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAA                                                                   >  SRR4302542.961422/1‑94 (MQ=60)
                             CACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAA                                                                  <  SRR4302542.4581345/94‑1 (MQ=60)
                               CTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAA                                                                >  SRR4302542.2426801/1‑94 (MQ=60)
                               CTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAA                                                                >  SRR4302542.1684605/1‑94 (MQ=60)
                                TTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAAT                                                               <  SRR4302542.2078663/94‑1 (MQ=60)
                                TTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAAT                                                               <  SRR4302542.7518778/94‑1 (MQ=60)
                                TTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAAT                                                               >  SRR4302542.4192816/1‑94 (MQ=60)
                                 TCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATA                                                              <  SRR4302542.3362474/94‑1 (MQ=60)
                                 TCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATA                                                              <  SRR4302542.3829599/94‑1 (MQ=60)
                                  CACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAG                                                             >  SRR4302542.3576681/1‑94 (MQ=60)
                                  CACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAG                                                             <  SRR4302542.2332634/94‑1 (MQ=60)
                                  CACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAG                                                             >  SRR4302542.408637/1‑94 (MQ=60)
                                  CACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAG                                                             <  SRR4302542.5319990/94‑1 (MQ=60)
                                   ACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGC                                                            >  SRR4302542.3243834/1‑94 (MQ=60)
                                   ACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGC                                                            <  SRR4302542.5129147/94‑1 (MQ=60)
                                    CCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCC                                                           >  SRR4302542.1530882/1‑94 (MQ=60)
                                    CCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCC                                                           >  SRR4302542.3556797/1‑94 (MQ=60)
                                    CCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCC                                                           <  SRR4302542.2965192/94‑1 (MQ=60)
                                    CCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCC                                                           >  SRR4302542.6611246/1‑94 (MQ=60)
                                     CGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCT                                                          >  SRR4302542.5716021/1‑94 (MQ=60)
                                     CGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCT                                                          <  SRR4302542.4879265/94‑1 (MQ=60)
                                     CGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCT                                                          >  SRR4302542.3273911/1‑94 (MQ=60)
                                      GCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTT                                                         <  SRR4302542.5920/94‑1 (MQ=60)
                                      GCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTT                                                         <  SRR4302542.7488179/94‑1 (MQ=60)
                                       CAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTC                                                        <  SRR4302542.63592/94‑1 (MQ=60)
                                        AAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCC                                                       <  SRR4302542.2947790/94‑1 (MQ=60)
                                        AAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCC                                                       >  SRR4302542.5336400/1‑94 (MQ=60)
                                        AAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCC                                                       >  SRR4302542.3713682/1‑94 (MQ=60)
                                         AAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCT                                                      >  SRR4302542.4395157/1‑94 (MQ=60)
                                         AAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCT                                                      >  SRR4302542.6978889/1‑94 (MQ=60)
                                         AAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCT                                                      >  SRR4302542.1204444/1‑94 (MQ=60)
                                         AAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCT                                                      <  SRR4302542.2751004/94‑1 (MQ=60)
                                         AAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCT                                                      <  SRR4302542.4473080/94‑1 (MQ=60)
                                          AACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTC                                                     <  SRR4302542.1838011/94‑1 (MQ=60)
                                          AACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTC                                                     >  SRR4302542.5863760/1‑94 (MQ=60)
                                          AACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTC                                                     <  SRR4302542.7368782/94‑1 (MQ=60)
                                           ACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCT                                                    <  SRR4302542.1930284/94‑1 (MQ=60)
                                           ACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCT                                                    <  SRR4302542.4746274/94‑1 (MQ=60)
                                             TTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAA                                                  >  SRR4302542.3237474/1‑94 (MQ=60)
                                               AAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAG                                                <  SRR4302542.5946932/94‑1 (MQ=60)
                                               AAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAG                                                >  SRR4302542.3000641/1‑94 (MQ=60)
                                               AAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAG                                                <  SRR4302542.1366685/94‑1 (MQ=60)
                                               AAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAG                                                >  SRR4302542.7263744/1‑94 (MQ=60)
                                                AAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGG                                               <  SRR4302542.4717779/94‑1 (MQ=60)
                                                AAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGG                                               >  SRR4302542.5280617/1‑94 (MQ=60)
                                                AAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGG                                               <  SRR4302542.1559680/94‑1 (MQ=60)
                                                 AGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGT                                              >  SRR4302542.3999925/1‑94 (MQ=60)
                                                 AGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGT                                              >  SRR4302542.5593555/1‑94 (MQ=60)
                                                 AGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGT                                              >  SRR4302542.685019/1‑94 (MQ=60)
                                                 AGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGT                                              >  SRR4302542.167058/1‑94 (MQ=60)
                                                 AGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGT                                              >  SRR4302542.1686787/1‑94 (MQ=60)
                                                  GAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTG                                             <  SRR4302542.7034329/94‑1 (MQ=60)
                                                  GAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTG                                             <  SRR4302542.2177518/94‑1 (MQ=60)
                                                   AAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGG                                            <  SRR4302542.3534250/94‑1 (MQ=60)
                                                   AAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGG                                            >  SRR4302542.1770168/1‑94 (MQ=60)
                                                     GTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCA                                          >  SRR4302542.6254893/1‑94 (MQ=60)
                                                     GTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCA                                          >  SRR4302542.3532386/1‑94 (MQ=60)
                                                      TTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCAT                                         <  SRR4302542.4934444/94‑1 (MQ=60)
                                                        TAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCA                                       >  SRR4302542.7301800/1‑94 (MQ=60)
                                                        TAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCA                                       <  SRR4302542.3998204/94‑1 (MQ=60)
                                                        TAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCA                                       >  SRR4302542.3004611/1‑94 (MQ=60)
                                                         AATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCAT                                      >  SRR4302542.4956631/1‑94 (MQ=60)
                                                         AATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCAT                                      <  SRR4302542.669530/94‑1 (MQ=60)
                                                         AATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCAT                                      <  SRR4302542.2312369/94‑1 (MQ=60)
                                                         AATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCAT                                      <  SRR4302542.1185297/94‑1 (MQ=60)
                                                         AATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCAT                                      <  SRR4302542.4952025/94‑1 (MQ=60)
                                                          ATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATG                                     >  SRR4302542.4336241/1‑94 (MQ=60)
                                                          ATTAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATG                                     <  SRR4302542.4981532/94‑1 (MQ=60)
                                                            TAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGAC                                   >  SRR4302542.5650833/1‑94 (MQ=60)
                                                            TAATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGAC                                   <  SRR4302542.222013/94‑1 (MQ=60)
                                                             AATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACT                                  >  SRR4302542.4127377/1‑94 (MQ=60)
                                                              ATACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTG                                 >  SRR4302542.23020/1‑94 (MQ=60)
                                                                ACTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGAT                               <  SRR4302542.6998499/94‑1 (MQ=60)
                                                                 CTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATC                              >  SRR4302542.4444088/1‑94 (MQ=60)
                                                                 CTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATC                              >  SRR4302542.1469349/1‑94 (MQ=60)
                                                                 CTACAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATC                              >  SRR4302542.5070442/1‑94 (MQ=60)
                                                                 CTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATC                              <  SRR4302542.5445270/94‑1 (MQ=60)
                                                                    CAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAG                           <  SRR4302542.4928548/94‑1 (MQ=60)
                                                                    CAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAG                           <  SRR4302542.7155260/94‑1 (MQ=60)
                                                                    CAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAG                           >  SRR4302542.5837085/1‑94 (MQ=60)
                                                                    CAGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAG                           <  SRR4302542.6635018/94‑1 (MQ=60)
                                                                    CAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAG                           >  SRR4302542.4679801/1‑94 (MQ=60)
                                                                    CAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAG                           >  SRR4302542.4175417/1‑94 (MQ=60)
                                                                    CAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAG                           <  SRR4302542.653963/94‑1 (MQ=60)
                                                                     AGAGTGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGC                          <  SRR4302542.3031467/94‑1 (MQ=60)
                                                                     AGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGC                          <  SRR4302542.184058/94‑1 (MQ=60)
                                                                      GAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCT                         <  SRR4302542.971000/94‑1 (MQ=60)
                                                                      GAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCT                         <  SRR4302542.976554/94‑1 (MQ=60)
                                                                         TGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAA                      <  SRR4302542.5719222/94‑1 (MQ=60)
                                                                         TGGCTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAA                      <  SRR4302542.139945/94‑1 (MQ=60)
                                                                            CTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAA                   >  SRR4302542.6650208/1‑94 (MQ=60)
                                                                            CTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAA                   >  SRR4302542.4788565/1‑94 (MQ=60)
                                                                            CTATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAA                   >  SRR4302542.1709644/1‑94 (MQ=60)
                                                                             TATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAA                  >  SRR4302542.901812/1‑94 (MQ=60)
                                                                             TATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAA                  <  SRR4302542.5242517/94‑1 (MQ=60)
                                                                             TATAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAA                  >  SRR4302542.4207048/1‑94 (MQ=60)
                                                                               TAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAG                >  SRR4302542.598064/1‑94 (MQ=60)
                                                                               TAAGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAG                >  SRR4302542.7086058/1‑94 (MQ=60)
                                                                               TAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAG                >  SRR4302542.1167810/1‑94 (MQ=60)
                                                                               TAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAG                >  SRR4302542.3654943/1‑94 (MQ=60)
                                                                                 AGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCA              >  SRR4302542.7416092/1‑94 (MQ=60)
                                                                                 AGGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCA              <  SRR4302542.4788169/94‑1 (MQ=60)
                                                                                  GGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCAC             >  SRR4302542.2137866/1‑94 (MQ=60)
                                                                                  GGATGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCAC             <  SRR4302542.3658773/94‑1 (MQ=60)
                                                                                  GGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCAC             >  SRR4302542.7286165/1‑94 (MQ=60)
                                                                                     TGTTAGCNGCTCNCTTACCNTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCnnnntgannnatnnnnnnnnnnnnannnnnnnt          <  SRR4302542.4949118/94‑34 (MQ=60)
                                                                                     TGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCT          >  SRR4302542.4109976/1‑94 (MQ=60)
                                                                                     TGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCT          <  SRR4302542.5334612/94‑1 (MQ=60)
                                                                                     TGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCT          <  SRR4302542.5596305/94‑1 (MQ=60)
                                                                                     TGTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGGGGCATCATGACTAATCAAGCTGAAAAAAAGCACTCT          >  SRR4302542.4564706/1‑94 (MQ=60)
                                                                                      GTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTG         >  SRR4302542.6757627/1‑94 (MQ=60)
                                                                                      GTTAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTG         <  SRR4302542.3012597/94‑1 (MQ=60)
                                                                                      GTTAGACGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTG         >  SRR4302542.1166589/1‑94 (MQ=60)
                                                                                        TAGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCA       <  SRR4302542.3063586/94‑1 (MQ=60)
                                                                                        TAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCA       <  SRR4302542.7569385/94‑1 (MQ=60)
                                                                                         AGCCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCAT      >  SRR4302542.7412357/1‑94 (MQ=60)
                                                                                         AGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCAT      >  SRR4302542.5165052/1‑94 (MQ=60)
                                                                                           CCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCATTT    <  SRR4302542.3856569/94‑1 (MQ=60)
                                                                                           CCGCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCATTT    >  SRR4302542.4636515/1‑94 (MQ=60)
                                                                                             GCTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCATTTTG  <  SRR4302542.1298889/94‑1 (MQ=60)
                                                                                             |                                                                                             
CCTTTACGTACGAACCGAAAGTATTGCGTCACTTCACCGCAAAACTTAAAGAAGTTTAATTAATACTACAGAGTGGCTATAAGGATGTTAGCCACTCTCTTACCCTACATCCTCAATAACAAAAATAGCCTTCCTCTAAAGGTGGCATCATGACTGATCAAGCTGAAAAAAAGCACTCTGCATTTTG  >  NC_000913/3887716‑3887902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑