Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,935,895 |
A→G |
T15A (ACC→GCC) |
rbsR → |
RbsR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,935,895 | 0 | A | G | 85.0%
| 701.7
/ 103.6
| 300 | T15A (ACC→GCC) | rbsR | RbsR |
| Reads supporting (aligned to +/- strand): ref base A (19/26); new base G (138/117); total (157/143) |
| Fisher's exact test for biased strand distribution p-value = 1.49e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 301 total aligned reads displayed.
TACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTA > NC_000913/3935803‑3935986
|
ccGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGcc > 1:4207189/1‑93 (MQ=255)
ccGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGcc > 1:4555692/1‑93 (MQ=255)
ccGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGcc > 2:2246748/1‑93 (MQ=255)
ccGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGcc < 2:17674/93‑1 (MQ=255)
ggCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCaa < 1:909040/93‑1 (MQ=255)
gCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAAc < 2:2290418/93‑1 (MQ=255)
cGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACa < 1:2563589/93‑1 (MQ=255)
cGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACa > 1:3204459/1‑93 (MQ=255)
tGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGt > 2:7045066/1‑93 (MQ=255)
gAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGtt > 2:7398976/1‑93 (MQ=255)
gAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGtt > 1:4864763/1‑93 (MQ=255)
gAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGtt < 1:6414732/93‑1 (MQ=255)
gAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGtt < 2:612190/93‑1 (MQ=255)
aaGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGttt > 1:1278973/1‑93 (MQ=255)
agagATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTtc < 1:551693/93‑1 (MQ=255)
agagATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTtc < 1:7011731/93‑1 (MQ=255)
gaTCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCa > 2:6628285/1‑93 (MQ=255)
gACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAGCAGTTTCTCACGtt > 2:4381492/1‑93 (MQ=255)
aCGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTa > 1:3641101/1‑93 (MQ=255)
gCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATc > 2:1204773/1‑93 (MQ=255)
gCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATc < 1:6026639/93‑1 (MQ=255)
aTTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTATCTCACGTTATCaa < 2:6453124/93‑1 (MQ=255)
tttttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAAt > 1:1247533/1‑93 (MQ=255)
tttttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAAt > 1:5133934/1‑93 (MQ=255)
tttttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAAt < 1:7189926/93‑1 (MQ=255)
ttttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATa < 2:3210639/93‑1 (MQ=255)
tttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATaa > 2:5462954/1‑93 (MQ=255)
tttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATaa < 2:2465571/93‑1 (MQ=255)
ttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATaaa > 1:2878142/1‑93 (MQ=255)
ttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATaaa < 2:349723/93‑1 (MQ=255)
gACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGAt < 1:6261867/93‑1 (MQ=255)
gACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGAt > 1:4081498/1‑93 (MQ=255)
cAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCg < 1:2236533/93‑1 (MQ=255)
cAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCg < 2:5244436/93‑1 (MQ=255)
aGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGc > 1:478201/1‑93 (MQ=255)
aGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGc > 2:3643855/1‑93 (MQ=255)
gCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCtt < 2:5563353/93‑1 (MQ=255)
agagGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCg > 2:3070810/1‑93 (MQ=255)
agagGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCg > 1:4612449/1‑93 (MQ=255)
agagGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCg > 2:4086034/1‑93 (MQ=255)
ggTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCa < 1:4015177/93‑1 (MQ=255)
ggTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCa > 2:6260005/1‑93 (MQ=255)
ggTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCa < 1:2951585/93‑1 (MQ=255)
ggTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCa < 2:1577520/93‑1 (MQ=255)
aCGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGa > 1:5852158/1‑93 (MQ=255)
aCGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGa < 2:6573189/93‑1 (MQ=255)
aCGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGa > 1:2736896/1‑93 (MQ=255)
aCGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGa < 2:1463218/93‑1 (MQ=255)
cGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGaa < 2:5010717/93‑1 (MQ=255)
cGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGaa < 1:1033333/93‑1 (MQ=255)
gCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGAGAAg < 2:768577/93‑1 (MQ=255)
cTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGc < 1:5348866/93‑1 (MQ=255)
ttGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCg > 2:6222829/1‑93 (MQ=255)
ttGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCg > 1:3409456/1‑93 (MQ=255)
ttGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGGTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCg > 1:4458416/1‑93 (MQ=255)
ggCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGAt < 1:6344564/93‑1 (MQ=255)
gCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGAtt > 2:1609057/1‑93 (MQ=255)
gCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGAtt < 2:3389285/93‑1 (MQ=255)
tACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTAc < 2:4544384/93‑1 (MQ=255)
aCAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTAcc > 1:438471/1‑93 (MQ=255)
aCAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTAcc > 2:5967163/1‑93 (MQ=255)
aaTGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGc > 1:1729593/1‑93 (MQ=255)
tGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCa > 2:6885814/1‑93 (MQ=255)
gAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCaa < 1:3052461/93‑1 (MQ=255)
gAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCaa > 1:3073579/1‑93 (MQ=255)
aaaGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGTTTCGTCAGTGAAGCGATTACCGCCaaa < 2:5171568/93‑1 (MQ=255)
aaaGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCaaa < 2:5079120/93‑1 (MQ=255)
aaaGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCaaa < 2:3186695/93‑1 (MQ=255)
aaaGATGTAGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCaca > 1:7408050/1‑91 (MQ=255)
aaGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATTAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAg > 2:4809396/1‑93 (MQ=255)
aGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGt < 2:729742/93‑1 (MQ=255)
gATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGtt > 1:569991/1‑93 (MQ=255)
aTGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTg < 2:3547033/93‑1 (MQ=255)
aTGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTg < 2:2088438/93‑1 (MQ=255)
tGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGa > 2:5673991/1‑93 (MQ=255)
tGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGa > 2:2943222/1‑93 (MQ=255)
tGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGa > 2:3774018/1‑93 (MQ=255)
gTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGaa < 2:1528658/93‑1 (MQ=255)
ttGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAg > 2:3906419/1‑93 (MQ=255)
tGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAgc < 2:6980609/93‑1 (MQ=255)
tGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAgc > 2:1815890/1‑93 (MQ=255)
gCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAgcg < 1:6772977/93‑1 (MQ=255)
cccGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAgcgg > 1:1163734/1‑93 (MQ=255)
ccGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAgcggc < 2:4919810/93‑1 (MQ=255)
gCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGa > 2:1040517/1‑93 (MQ=255)
gCCTGGCGGGCGTTTCTGCCCCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGa < 1:7506089/93‑1 (MQ=255)
cTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGAtt > 1:5576147/1‑93 (MQ=255)
cTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGAtt > 1:5954598/1‑93 (MQ=255)
cTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGAtt > 1:6469369/1‑93 (MQ=255)
tGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTa > 1:5076988/1‑93 (MQ=255)
tGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTa > 2:6723955/1‑93 (MQ=255)
ggcgggcgTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTaa < 2:4222906/93‑1 (MQ=255)
gggcgTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGa < 2:1984546/93‑1 (MQ=255)
ggcgTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGaa > 1:3776489/1‑93 (MQ=255)
ggcgTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGaa > 2:2712206/1‑93 (MQ=255)
ggcgTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGaa > 1:3929993/1‑93 (MQ=255)
gcgTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAAc < 1:7229022/93‑1 (MQ=255)
gTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTc < 1:6947876/93‑1 (MQ=255)
gTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTc < 1:1988296/93‑1 (MQ=255)
tCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAAt > 1:2503544/1‑93 (MQ=255)
|
TACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTA > NC_000913/3935803‑3935986
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACG > NC_000913/3935802‑3935988
|
GTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTG > SRR4302542.5466554/1‑94 (MQ=60)
TACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGC > SRR4302542.5709986/1‑94 (MQ=60)
ACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCC > SRR4302542.4248665/1‑94 (MQ=60)
ACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCC > SRR4302542.4600264/1‑94 (MQ=60)
CCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCT < SRR4302542.997641/94‑1 (MQ=60)
CCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCT > SRR4302542.2916216/1‑94 (MQ=60)
GTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCA > SRR4302542.6968226/1‑94 (MQ=60)
GTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCA > SRR4302542.4993638/1‑94 (MQ=60)
GGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAAC < SRR4302542.916884/94‑1 (MQ=60)
GGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAAC > SRR4302542.5486571/1‑94 (MQ=60)
GCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACA > SRR4302542.3234818/1‑94 (MQ=60)
GCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACA > SRR4302542.3677658/1‑94 (MQ=60)
CGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAG < SRR4302542.2588442/94‑1 (MQ=60)
CGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAG < SRR4302542.4769306/94‑1 (MQ=60)
GTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGT > SRR4302542.6015604/1‑94 (MQ=60)
TGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTT > SRR4302542.4286535/1‑94 (MQ=60)
TGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTT > SRR4302542.4912129/1‑94 (MQ=60)
TGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTT > SRR4302542.5083830/1‑94 (MQ=60)
GAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTT > SRR4302542.7501112/1‑94 (MQ=60)
GAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTT < SRR4302542.1661656/94‑1 (MQ=60)
GAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTT < SRR4302542.6477940/94‑1 (MQ=60)
GAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTT > SRR4302542.1289983/1‑94 (MQ=60)
GAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTT < SRR4302542.3096168/94‑1 (MQ=60)
AGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCT < SRR4302542.556459/94‑1 (MQ=60)
AGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCT < SRR4302542.7080602/94‑1 (MQ=60)
GAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGTCGGCGTTTTTGCCTCAACAGTTTCTC > SRR4302542.639807/1‑94 (MQ=60)
GAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTC > SRR4302542.6978134/1‑94 (MQ=60)
GAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTC < SRR4302542.6344663/94‑1 (MQ=60)
GAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTC > SRR4302542.926707/1‑94 (MQ=60)
ATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACG < SRR4302542.4047397/94‑1 (MQ=60)
CGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTT < SRR4302542.6421838/94‑1 (MQ=60)
GACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTA > SRR4302542.3675062/1‑94 (MQ=60)
GACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTA > SRR4302542.1107633/1‑94 (MQ=60)
ACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTAT > SRR4302542.4289148/1‑94 (MQ=60)
ACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTAT > SRR4302542.7296672/1‑94 (MQ=60)
CGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATC < SRR4302542.5338204/94‑1 (MQ=60)
GCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCA < SRR4302542.6085001/94‑1 (MQ=60)
CATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAA > SRR4302542.6137551/1‑94 (MQ=60)
CATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAA > SRR4302542.5678940/1‑94 (MQ=60)
ATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACcgttttaaa > SRR4302542.5539972/1‑85 (MQ=60)
ATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAAT > SRR4302542.1258256/1‑94 (MQ=60)
ATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAAT > SRR4302542.5183839/1‑94 (MQ=60)
TTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATA < SRR4302542.7260472/94‑1 (MQ=60)
TTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAA > SRR4302542.2905794/1‑94 (MQ=60)
TTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAG < SRR4302542.6481374/94‑1 (MQ=60)
AGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGAT > SRR4302542.7173756/1‑94 (MQ=60)
AGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGAT > SRR4302542.4121722/1‑94 (MQ=60)
GACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATC < SRR4302542.6323569/94‑1 (MQ=60)
GACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATC < SRR4302542.252705/94‑1 (MQ=60)
GACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATC < SRR4302542.6733147/94‑1 (MQ=60)
GACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATC > SRR4302542.4623648/1‑94 (MQ=60)
CAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGC > SRR4302542.482348/1‑94 (MQ=60)
CAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGC < SRR4302542.2255770/94‑1 (MQ=60)
CAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGC > SRR4302542.3091406/1‑94 (MQ=60)
GGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT < SRR4302542.1204075/94‑1 (MQ=60)
CAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCG > SRR4302542.4657516/1‑94 (MQ=60)
CAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCG < SRR4302542.3276174/94‑1 (MQ=60)
CAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCG < SRR4302542.449010/94‑1 (MQ=60)
CAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCG > SRR4302542.3060177/1‑94 (MQ=60)
AGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGT < SRR4302542.2237708/94‑1 (MQ=60)
AGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGT < SRR4302542.4180250/94‑1 (MQ=60)
GGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAGCAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAG < SRR4302542.4802777/94‑1 (MQ=60)
GGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAG < SRR4302542.1289221/94‑1 (MQ=60)
GGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAG < SRR4302542.2979839/94‑1 (MQ=60)
GGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAG < SRR4302542.4054808/94‑1 (MQ=60)
GTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGT > SRR4302542.3112094/1‑94 (MQ=60)
TGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTG < SRR4302542.4223220/94‑1 (MQ=60)
TGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTG > SRR4302542.1215351/1‑94 (MQ=60)
GACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGA < SRR4302542.808591/94‑1 (MQ=60)
GACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGA > SRR4302542.5668527/1‑94 (MQ=60)
GACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGA > SRR4302542.5908913/1‑94 (MQ=60)
GACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGA > SRR4302542.2763292/1‑94 (MQ=60)
ACGCTTGGCTACAATGAAAGATTTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAA < SRR4302542.5168923/94‑1 (MQ=60)
ACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAA > SRR4302542.7271653/1‑94 (MQ=60)
ACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAA < SRR4302542.7110621/94‑1 (MQ=60)
CGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAG < SRR4302542.1042219/94‑1 (MQ=60)
CTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCG > SRR4302542.3642248/1‑94 (MQ=60)
CTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCG < SRR4302542.5400820/94‑1 (MQ=60)
CTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCG > SRR4302542.3441411/1‑94 (MQ=60)
CTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCG < SRR4302542.729828/94‑1 (MQ=60)
CTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCG > SRR4302542.3845849/1‑94 (MQ=60)
CTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCG < SRR4302542.5896093/94‑1 (MQ=60)
CTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGGTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCG > SRR4302542.4502149/1‑94 (MQ=60)
CTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCG < SRR4302542.3067660/94‑1 (MQ=60)
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGA > SRR4302542.2852546/1‑94 (MQ=60)
TGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGAT < SRR4302542.5308000/94‑1 (MQ=60)
GGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATT < SRR4302542.2793734/94‑1 (MQ=60)
GGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATT < SRR4302542.6407068/94‑1 (MQ=60)
GCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTA < SRR4302542.7026047/94‑1 (MQ=60)
GCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTA < SRR4302542.6248429/94‑1 (MQ=60)
GCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTA < SRR4302542.5545131/94‑1 (MQ=60)
CTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTAC < SRR4302542.6424975/94‑1 (MQ=60)
TACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACC > SRR4302542.442268/1‑94 (MQ=60)
TACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACC > SRR4302542.4112749/1‑94 (MQ=60)
CAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGC > SRR4302542.1744604/1‑94 (MQ=60)
ATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCA > SRR4302542.6778148/1‑94 (MQ=60)
ATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCA < SRR4302542.4615476/94‑1 (MQ=60)
ATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCA < SRR4302542.4875907/94‑1 (MQ=60)
ATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCA > SRR4302542.2602451/1‑94 (MQ=60)
TGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAA > SRR4302542.5591061/1‑94 (MQ=60)
TGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAA > SRR4302542.3102871/1‑94 (MQ=60)
GAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAA < SRR4302542.3081589/94‑1 (MQ=60)
GAAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAA > SRR4302542.7489145/1‑94 (MQ=60)
GAAAGATGTAGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCACA > SRR4302542.7480553/1‑94 (MQ=60)
AAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAG < SRR4302542.7051122/94‑1 (MQ=60)
AAAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAG > SRR4302542.3796276/1‑94 (MQ=60)
AAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGT > SRR4302542.3419188/1‑94 (MQ=60)
AAGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGT < SRR4302542.189736/94‑1 (MQ=60)
AGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTT > SRR4302542.2565070/1‑94 (MQ=60)
AGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTT < SRR4302542.4530093/94‑1 (MQ=60)
AGATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTT > SRR4302542.574890/1‑94 (MQ=60)
GATGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTG < SRR4302542.1141408/94‑1 (MQ=60)
TGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAA > SRR4302542.5999520/1‑94 (MQ=60)
TGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAA < SRR4302542.5595043/94‑1 (MQ=60)
TGTTGCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAA < SRR4302542.2041968/94‑1 (MQ=60)
GCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGG < SRR4302542.6839603/94‑1 (MQ=60)
GCCCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGG > SRR4302542.1173744/1‑94 (MQ=60)
CCGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCG < SRR4302542.4075702/94‑1 (MQ=60)
CGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGA > SRR4302542.889026/1‑94 (MQ=60)
CGCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGA > SRR4302542.3992965/1‑94 (MQ=60)
GCCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGAT < SRR4302542.3483704/94‑1 (MQ=60)
GCCTGGCGGGCGTTTCTGCCCCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGAT < SRR4302542.7579910/94‑1 (MQ=60)
CCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATT > SRR4302542.6012262/1‑94 (MQ=60)
CCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATT > SRR4302542.5630313/1‑94 (MQ=60)
CCTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATT > SRR4302542.6533110/1‑94 (MQ=60)
CTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTA < SRR4302542.6496907/94‑1 (MQ=60)
CTGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTA > SRR4302542.5126325/1‑94 (MQ=60)
TGGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAA > SRR4302542.4452523/1‑94 (MQ=60)
GGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAA < SRR4302542.5836750/94‑1 (MQ=60)
GGCGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAA < SRR4302542.6057782/94‑1 (MQ=60)
GCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAG > SRR4302542.3203967/1‑94 (MQ=60)
CGGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGA > SRR4302542.736485/1‑94 (MQ=60)
CGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGA > SRR4302542.4577689/1‑94 (MQ=60)
GGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAA > SRR4302542.2945950/1‑94 (MQ=60)
GGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAA < SRR4302542.1545175/94‑1 (MQ=60)
GGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAA > SRR4302542.3813853/1‑94 (MQ=60)
GGGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAA > SRR4302542.3968775/1‑94 (MQ=60)
GGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAGC > SRR4302542.2719201/1‑94 (MQ=60)
GGCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAAC > SRR4302542.1265321/1‑94 (MQ=60)
GCGTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACT < SRR4302542.7299934/94‑1 (MQ=60)
GCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACT < SRR4302542.1981371/94‑1 (MQ=60)
CGTTTCTGCCTCAACAGTTTCTAACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTC > SRR4302542.2425389/1‑94 (MQ=60)
GTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCA < SRR4302542.7016143/94‑1 (MQ=60)
GTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCA > SRR4302542.4878709/1‑94 (MQ=60)
GTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCA < SRR4302542.2482123/94‑1 (MQ=60)
GTTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCA > SRR4302542.5146889/1‑94 (MQ=60)
GTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCA < SRR4302542.2005449/94‑1 (MQ=60)
TTTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAA < SRR4302542.5937714/94‑1 (MQ=60)
TTCTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAAT < SRR4302542.3925036/94‑1 (MQ=60)
TTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAAT > SRR4302542.2527850/1‑94 (MQ=60)
CTGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTA < SRR4302542.4490445/94‑1 (MQ=60)
TGCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTAC < SRR4302542.6953448/94‑1 (MQ=60)
GCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACG < SRR4302542.3728138/94‑1 (MQ=60)
GCCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACG < SRR4302542.1253474/94‑1 (MQ=60)
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GTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACG > NC_000913/3935802‑3935988
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
