Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,548	1 bp→GG	intergenic (‑117/‑744)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,547	1	.	G	94.7%	1183.1 / 53.0	374	intergenic (‑116/‑745)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base . (14/6); new base G (171/183); total (185/189)
Fisher's exact test for biased strand distribution p-value = 6.80e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.93e-02
*	NC_000913	3,957,548	0	T	G	100.0%	1248.7 / NA	374	intergenic (‑117/‑744)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (185/189); total (185/189)

Only 100 of 374 total aligned reads displayed.

TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑GC‑TCGCA‑GGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957470‑3957627

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 aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCA‑GGT‑c‑cc                                                                    <  2:1064051/93‑2 (MQ=255)

  gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAACCGG‑GCTTCGCA‑GGT‑c‑ccc                                                                   >  1:2120238/1‑91 (MQ=255)

   cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGT‑c‑cctc                                                                  >  2:6100300/1‑90 (MQ=255)

      gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAg                                                                <  1:2679786/93‑1 (MQ=255)

        tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAggg                                                              >  2:1314386/1‑93 (MQ=255)

         ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGCGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAgggg                                                             >  1:2197695/1‑93 (MQ=255)

          cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGga                                                            <  1:4350163/93‑1 (MQ=255)

          cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGga                                                            <  2:6333376/93‑1 (MQ=255)

          cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGga                                                            <  2:4776150/93‑1 (MQ=255)

          cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGga                                                            <  1:857537/93‑1 (MQ=255)

            cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGgaga                                                          >  2:7186010/1‑93 (MQ=255)

              gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGaaa                                                        <  2:1131445/93‑1 (MQ=255)

              gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGaaa                                                        <  1:2269769/93‑1 (MQ=255)

                  cTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGGGAAAACtt                                                    >  1:5360208/1‑93 (MQ=255)

                  cTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAACCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGGGAAAACtt                                                    >  1:6527967/1‑93 (MQ=255)

                   tAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTa                                                   >  1:675393/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                  >  2:680651/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                  <  2:6898813/93‑1 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                  <  1:7242985/93‑1 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                  >  2:1630710/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                  <  2:3930457/93‑1 (MQ=255)

                     aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAgg                                                 <  2:6029585/93‑1 (MQ=255)

                     aCGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAgg                                                 >  1:473448/1‑93 (MQ=255)

                     aCGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAgg                                                 >  1:1213898/1‑93 (MQ=255)

                      cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAggg                                                <  2:3597889/93‑1 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGc                                               <  1:3125835/93‑1 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGc                                               >  1:4548655/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                              >  2:4290977/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                              >  2:2501188/1‑93 (MQ=255)

                         aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCct                                             <  1:3158558/93‑1 (MQ=255)

                         aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCct                                             >  2:6980436/1‑93 (MQ=255)

                         aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAACCCGGAAAATCCGG‑GCTTCGCAGGGC‑C‑CTCAAGGGGAGAAAACTTAGGGCct                                             >  1:5220372/1‑93 (MQ=255)

                          aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc                                            <  2:4005295/93‑1 (MQ=255)

                          aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc                                            <  1:5772513/93‑1 (MQ=255)

                           ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctct                                           >  2:2615137/1‑93 (MQ=255)

                           ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctct                                           <  2:6613070/93‑1 (MQ=255)

                             gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt                                         <  2:4718846/93‑1 (MQ=255)

                             gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt                                         <  1:4914451/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        <  2:3068252/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        <  2:6717192/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        <  2:508999/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        >  1:4162063/1‑93 (MQ=255)

                              tcagtcagGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAACCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGGGAAAACTTAGGGCCTCTATg                                        >  1:5407780/1‑93 (MQ=255)

                               cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                       <  2:7291736/93‑1 (MQ=255)

                               cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                       <  1:2814822/93‑1 (MQ=255)

                                 gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc                                     <  1:5578738/93‑1 (MQ=255)

                                 gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc                                     <  2:1209232/93‑1 (MQ=255)

                                 gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc                                     <  1:4038328/93‑1 (MQ=255)

                                 gtcagGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc                                     >  1:3591628/1‑93 (MQ=255)

                                  tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                    >  2:2827864/1‑93 (MQ=255)

                                  tcagGGAGTGGCTGGGACATATATGGCAAAAACCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGCGAAAACTTAGGGCCTCTATggggt                                    >  1:5719863/1‑91 (MQ=255)

                                   cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa                                   >  2:4312120/1‑93 (MQ=255)

                                   cagGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGGCTCTATGGGCTa                                   >  1:3844103/1‑93 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  <  2:4863370/93‑1 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  <  1:4616628/93‑1 (MQ=255)

                                     gggAGTGGCTGGGACATATATGGCAAAAGTCCGGAAAATCCGG‑GCTTTGCA‑GGTCC‑CCCCAAGGGCGAAAACATAGGGCCCCCATGGGCTACa                                 >  1:324946/1‑93 (MQ=255)

                                      ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGT‑CGCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                <  2:1739023/93‑1 (MQ=255)

                                      ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                >  2:2719668/1‑93 (MQ=255)

                                       gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                               <  1:378319/93‑1 (MQ=255)

                                       gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                               <  1:946153/93‑1 (MQ=255)

                                       gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                               <  1:1401120/93‑1 (MQ=255)

                                       gAGTGGCTGGTACATATATGGCAAAAACCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                               >  1:1610075/1‑93 (MQ=255)

                                        aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                              >  2:335884/1‑93 (MQ=255)

                                          tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                            >  1:6159723/1‑93 (MQ=255)

                                          tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                            <  2:6432150/93‑1 (MQ=255)

                                           ggCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa                           >  2:1897442/1‑93 (MQ=255)

                                             cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                         <  2:822713/93‑1 (MQ=255)

                                             cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                         <  1:5096962/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        <  1:1887430/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        <  1:2435657/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        <  1:6027750/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        <  2:5018700/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        <  2:5844472/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       <  2:741027/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       >  2:4564047/1‑93 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       <  2:1163584/93‑1 (MQ=255)

                                               ggTACATATAGGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       <  1:2513800/93‑1 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      <  1:1161824/93‑1 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      <  1:1814132/93‑1 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      <  2:5324563/93‑1 (MQ=255)

                                                  aCATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                    >  2:569953/1‑93 (MQ=255)

                                                  aCATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                    <  2:6223907/93‑1 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                   <  1:77240/93‑1 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                   <  1:1592737/93‑1 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGCCATTATCggg                   >  1:1995076/1‑93 (MQ=255)

                                                       tatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg               >  2:3505696/1‑93 (MQ=255)

                                                       tatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg               >  2:6072201/1‑93 (MQ=255)

                                                         tGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt             <  1:6333020/93‑1 (MQ=255)

                                                          ggCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt            <  1:7080039/93‑1 (MQ=255)

                                                           gCAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta           <  2:5476560/93‑1 (MQ=255)

                                                            cAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat          <  2:3774211/93‑1 (MQ=255)

                                                            cAAAAGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat          <  2:2428958/93‑1 (MQ=255)

                                                             aaaaGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt         >  1:5535530/1‑93 (MQ=255)

                                                             aaaaGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt         >  2:4167343/1‑93 (MQ=255)

                                                                aGCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta      <  1:6906925/93‑1 (MQ=255)

                                                                 gCCCGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat     >  2:2344766/1‑93 (MQ=255)

                                                                   ccGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   <  2:2133587/93‑1 (MQ=255)

                                                                    cGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt  <  2:3300779/93‑1 (MQ=255)

                                                                    cGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt  <  1:6463072/93‑1 (MQ=255)

                                                                    cGGAAAATCCGG‑GCTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt  <  2:3667786/93‑1 (MQ=255)

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TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑GC‑TCGCA‑GGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957470‑3957627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A