Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,972,637 2 bp→GC coding (430‑431/546 nt) wecD → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,972,6370CG100.0% 1638.8 / NA 486R144A (CGT→GCT) wecDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (223/263);  total (223/263)
*NC_0009133,972,6380GC100.0% 1646.5 / NA 486R144A (CGT→GCT) wecDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (223/263);  total (223/263)

Only 100 of 486 total aligned reads displayed.

CTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATCGTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAG  >  NC_000913/3972550‑3972724
                                                                                       ||                                                                                       
 tCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTcgc‑g                                                                                   >  2:3445226/1‑93 (MQ=255)
   aaTGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGt                                                                                 <  2:6342592/93‑1 (MQ=255)
    aTGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTa                                                                                >  2:1342635/1‑93 (MQ=255)
      gCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTaaa                                                                              >  2:3122434/1‑93 (MQ=255)
      gCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTaaa                                                                              >  2:4030665/1‑93 (MQ=255)
       cGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTaaaa                                                                             <  2:1234794/93‑1 (MQ=255)
       cGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTaaaa                                                                             <  1:5810124/93‑1 (MQ=255)
        gACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAaac                                                                            >  1:5666182/1‑93 (MQ=255)
        gACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAaac                                                                            <  1:4036832/93‑1 (MQ=255)
         aCAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGGTaaaaa                                                                            >  2:5954949/1‑92 (MQ=255)
          cAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAaacaa                                                                          >  1:6275261/1‑93 (MQ=255)
           aGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAaacaac                                                                         >  1:2786081/1‑93 (MQ=255)
           aGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAaacaac                                                                         >  2:6549487/1‑93 (MQ=255)
            gATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACt                                                                        <  1:1622814/93‑1 (MQ=255)
            gATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACt                                                                        >  2:4103664/1‑93 (MQ=255)
              tGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACttt                                                                      >  2:6248688/1‑93 (MQ=255)
              tGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACttt                                                                      <  2:5762715/93‑1 (MQ=255)
              tGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACttt                                                                      <  2:7058615/93‑1 (MQ=255)
                cgcgAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGc                                                                    <  1:3706631/93‑1 (MQ=255)
                 gcgAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCg                                                                   >  2:1906800/1‑93 (MQ=255)
                   gAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCggg                                                                 >  2:3838867/1‑93 (MQ=255)
                    aaTTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGt                                                                <  2:6060288/93‑1 (MQ=255)
                    aaTTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGt                                                                >  1:413391/1‑93 (MQ=255)
                      ttGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTgg                                                              >  1:2358663/1‑93 (MQ=255)
                      ttGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTgg                                                              <  2:148075/93‑1 (MQ=255)
                       tGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGc                                                             <  1:4505783/93‑1 (MQ=255)
                           ctgctgGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGAcc                                                         >  1:1836928/1‑93 (MQ=255)
                            tgctgGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGAccc                                                        >  2:2144563/1‑93 (MQ=255)
                            tgctgGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGAccc                                                        >  1:5015293/1‑93 (MQ=255)
                             gctggctgGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCa                                                       >  1:546034/1‑93 (MQ=255)
                               tggctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCaaa                                                     <  1:2198568/93‑1 (MQ=255)
                               tggctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCaaa                                                     <  2:5388407/93‑1 (MQ=255)
                               tggctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCaaa                                                     <  2:7257085/93‑1 (MQ=255)
                               tggctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCaaa                                                     >  1:1379055/1‑93 (MQ=255)
                                 gctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATg                                                   <  2:4775761/93‑1 (MQ=255)
                                 gctggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATg                                                   >  2:5530048/1‑93 (MQ=255)
                                   tggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATggg                                                 <  1:5971413/93‑1 (MQ=255)
                                    ggACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGc                                                <  1:1966489/93‑1 (MQ=255)
                                      aCGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCaa                                              <  2:2576113/93‑1 (MQ=255)
                                      aCGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCaa                                              <  1:6487847/93‑1 (MQ=255)
                                       cgcgGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAac                                             <  1:6195827/93‑1 (MQ=255)
                                        gcgGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAaca                                            >  1:807175/1‑93 (MQ=255)
                                        gcgGTGCAGGTGCTGAGCTGATGCAAAC‑GCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAacac                                           <  2:6729060/93‑1 (MQ=255)
                                         cgGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAacac                                           <  1:2949792/93‑1 (MQ=255)
                                         cgGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAacac                                           <  2:739222/93‑1 (MQ=255)
                                          ggTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAcc                                          >  1:7049313/1‑93 (MQ=255)
                                           gTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccg                                         >  1:7225088/1‑93 (MQ=255)
                                           gTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccg                                         >  2:3904467/1‑93 (MQ=255)
                                           gTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccg                                         >  1:4708393/1‑93 (MQ=255)
                                            tGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccgc                                        >  2:6760856/1‑93 (MQ=255)
                                            tGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccgc                                        <  1:3465706/93‑1 (MQ=255)
                                            tGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccgc                                        <  1:3234604/93‑1 (MQ=255)
                                             gCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccgcc                                       >  1:971343/1‑93 (MQ=255)
                                             gCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAccgcc                                       >  2:7516537/1‑93 (MQ=255)
                                                ggTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCcgcg                                    >  1:1041985/1‑93 (MQ=255)
                                                ggTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCcgcg                                    >  2:5693713/1‑93 (MQ=255)
                                                ggTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCcgcg                                    <  2:3344802/93‑1 (MQ=255)
                                                    ctgagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTa                                <  1:3114320/93‑1 (MQ=255)
                                                     tgagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaa                               >  1:5856738/1‑93 (MQ=255)
                                                     tgagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaa                               <  2:283826/93‑1 (MQ=255)
                                                      gagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaaa                              >  1:5220995/1‑93 (MQ=255)
                                                      gagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaaa                              >  1:729781/1‑93 (MQ=255)
                                                      gagctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTaaa                              <  2:2756232/93‑1 (MQ=255)
                                                       agctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAAc                             <  2:5261094/93‑1 (MQ=255)
                                                       agctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAAc                             <  1:7459935/93‑1 (MQ=255)
                                                        gctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACg                            >  1:1283900/1‑93 (MQ=255)
                                                         ctgaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGa                           <  1:4327614/93‑1 (MQ=255)
                                                           gaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGata                         <  2:2977249/93‑1 (MQ=255)
                                                           gaTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGata                         >  1:5578271/1‑93 (MQ=255)
                                                            aTGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGatac                        >  2:2661331/1‑93 (MQ=255)
                                                             tGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTTGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGataca                       <  1:2060824/93‑1 (MQ=255)
                                                             tGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGataca                       >  1:4881093/1‑93 (MQ=255)
                                                             tGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGataca                       <  1:3081960/93‑1 (MQ=255)
                                                             tGCAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGacaca                       <  1:6595634/93‑1 (MQ=255)
                                                               cAAACGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGatacata                     >  2:3729051/1‑93 (MQ=255)
                                                                aaaCGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGatacatac                    <  1:6528040/93‑1 (MQ=255)
                                                                 aaCGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAtacataca                   <  1:1551326/93‑1 (MQ=255)
                                                                 aaCGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAtacataca                   >  2:6967991/1‑93 (MQ=255)
                                                                  aCGGCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACaa                  >  1:6800846/1‑93 (MQ=255)
                                                                    ggCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAg                <  1:3397211/93‑1 (MQ=255)
                                                                    ggCGCTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAg                >  2:1684097/1‑93 (MQ=255)
                                                                     gcgcTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgt               <  2:5620385/93‑1 (MQ=255)
                                                                     gcgcTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgt               >  2:3232951/1‑93 (MQ=255)
                                                                     gcgcTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgt               >  2:2367546/1‑93 (MQ=255)
                                                                      cgcTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtg              >  1:2451725/1‑93 (MQ=255)
                                                                      cgcTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtg              <  1:6424076/93‑1 (MQ=255)
                                                                      cgcTAAACTGCGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCAAAATGGGCCACACCGCCGCGCTTAAACGATACATACAAAgtg              <  2:4857495/93‑1 (MQ=255)
                                                                       gcTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtgg             >  1:1169016/1‑93 (MQ=255)
                                                                       gcTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtgg             >  1:5154303/1‑93 (MQ=255)
                                                                        cTAAACTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAgtggt            >  2:2034984/1‑93 (MQ=255)
                                                                           aaCTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCg         >  2:5800813/1‑93 (MQ=255)
                                                                            aCTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGa        >  1:2655254/1‑93 (MQ=255)
                                                                             cTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGaa       >  2:4299180/1‑93 (MQ=255)
                                                                             cTGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGaa       <  2:111983/93‑1 (MQ=255)
                                                                              tGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAAt      >  1:5368671/1‑93 (MQ=255)
                                                                              tGGGCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAAt      <  2:4534144/93‑1 (MQ=255)
                                                                               gggCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATg     >  2:686511/1‑93 (MQ=255)
                                                                               gggCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATg     >  2:4399761/1‑93 (MQ=255)
                                                                                ggCGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGt    <  2:5121147/93‑1 (MQ=255)
                                                                                  cGTATGCTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAg  <  1:3892666/93‑1 (MQ=255)
                                                                                       ||                                                                                       
CTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATCGTCGC‑GGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAG  >  NC_000913/3972550‑3972724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 259 total aligned reads displayed.
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATCGTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  >  NC_000913/3972544‑3972726
                                                                                             |                                                                                         
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATG                                                                                           >  SRR4302542.1057278/1‑94 (MQ=60)
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATG                                                                                           <  SRR4302542.3209215/94‑1 (MQ=60)
     ACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGC                                                                                      >  SRR4302542.5607836/1‑94 (MQ=60)
      CTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCG                                                                                     <  SRR4302542.245151/94‑1 (MQ=60)
          ATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAA                                                                                 >  SRR4302542.6391834/1‑94 (MQ=60)
           TGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAA                                                                                >  SRR4302542.2834164/1‑94 (MQ=60)
           TGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAA                                                                                <  SRR4302542.5182514/94‑1 (MQ=60)
             CGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAAC                                                                              <  SRR4302542.2187540/94‑1 (MQ=60)
             CGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAAC                                                                              >  SRR4302542.6863689/1‑94 (MQ=60)
             CGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAAC                                                                              >  SRR4302542.5721218/1‑94 (MQ=60)
              GACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACA                                                                             <  SRR4302542.1912793/94‑1 (MQ=60)
              GACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACA                                                                             <  SRR4302542.5264347/94‑1 (MQ=60)
              GACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACA                                                                             <  SRR4302542.5630597/94‑1 (MQ=60)
              GACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTCCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACA                                                                             <  SRR4302542.6553775/94‑1 (MQ=60)
               ACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAA                                                                            >  SRR4302542.6337111/1‑94 (MQ=60)
                CAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAAC                                                                           >  SRR4302542.2812900/1‑94 (MQ=60)
                CAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAAC                                                                           <  SRR4302542.3240932/94‑1 (MQ=60)
                 AGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACT                                                                          >  SRR4302542.1488124/1‑94 (MQ=60)
                 AGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACT                                                                          <  SRR4302542.4170196/94‑1 (MQ=60)
                 AGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACT                                                                          >  SRR4302542.1204570/1‑94 (MQ=60)
                 AGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACT                                                                          >  SRR4302542.565077/1‑94 (MQ=60)
                 AGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGGGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACT                                                                          >  SRR4302542.1398722/1‑94 (MQ=60)
                  GATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTT                                                                         >  SRR4302542.7456863/1‑94 (MQ=60)
                   ATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGGGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTT                                                                        >  SRR4302542.5474109/1‑94 (MQ=60)
                   ATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTT                                                                        <  SRR4302542.4250281/94‑1 (MQ=60)
                   ATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTT                                                                        <  SRR4302542.2261585/94‑1 (MQ=60)
                   ATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTT                                                                        >  SRR4302542.6022865/1‑94 (MQ=60)
                   ATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTT                                                                        >  SRR4302542.7003827/1‑94 (MQ=60)
                   ATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTT                                                                        >  SRR4302542.5346990/1‑94 (MQ=60)
                    TGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTG                                                                       <  SRR4302542.1914360/94‑1 (MQ=60)
                    TGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTG                                                                       <  SRR4302542.5790312/94‑1 (MQ=60)
                      CGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCG                                                                     <  SRR4302542.2738957/94‑1 (MQ=60)
                      CGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCG                                                                     <  SRR4302542.3743306/94‑1 (MQ=60)
                      CGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCG                                                                     >  SRR4302542.624890/1‑94 (MQ=60)
                       GCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGG                                                                    <  SRR4302542.419522/94‑1 (MQ=60)
                        CGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGG                                                                   >  SRR4302542.4969569/1‑94 (MQ=60)
                         GAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGT                                                                  >  SRR4302542.1640065/1‑94 (MQ=60)
                         GAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGT                                                                  <  SRR4302542.3129036/94‑1 (MQ=60)
                         GAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGT                                                                  <  SRR4302542.792409/94‑1 (MQ=60)
                         GAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGT                                                                  >  SRR4302542.5162224/1‑94 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 >  SRR4302542.4090986/1‑94 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 >  SRR4302542.7144387/1‑94 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 <  SRR4302542.1665313/94‑1 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 >  SRR4302542.5006565/1‑94 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 >  SRR4302542.2645806/1‑94 (MQ=60)
                          AATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTG                                                                 <  SRR4302542.5241948/94‑1 (MQ=60)
                           ATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGG                                                                <  SRR4302542.6550677/94‑1 (MQ=60)
                           ATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGG                                                                >  SRR4302542.2378944/1‑94 (MQ=60)
                           ATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGG                                                                >  SRR4302542.1502567/1‑94 (MQ=60)
                            TTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAGACAACTTTGCGGGTGGC                                                               <  SRR4302542.3440036/94‑1 (MQ=60)
                             TGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCG                                                              <  SRR4302542.798941/94‑1 (MQ=60)
                             TGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCG                                                              <  SRR4302542.4549951/94‑1 (MQ=60)
                             TGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCG                                                              <  SRR4302542.2786949/94‑1 (MQ=60)
                               GCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGAC                                                            <  SRR4302542.553146/94‑1 (MQ=60)
                                CCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACC                                                           >  SRR4302542.4935584/1‑94 (MQ=60)
                                CCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACC                                                           >  SRR4302542.4080489/1‑94 (MQ=60)
                                CCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACC                                                           >  SRR4302542.1852830/1‑94 (MQ=60)
                                 CTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCC                                                          >  SRR4302542.1609525/1‑94 (MQ=60)
                                 CTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCC                                                          >  SRR4302542.5064004/1‑94 (MQ=60)
                                  TGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCA                                                         <  SRR4302542.2978117/94‑1 (MQ=60)
                                  TGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCA                                                         >  SRR4302542.550749/1‑94 (MQ=60)
                                    CTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAA                                                       >  SRR4302542.5666367/1‑94 (MQ=60)
                                    CTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAA                                                       <  SRR4302542.6257815/94‑1 (MQ=60)
                                    CTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAA                                                       >  SRR4302542.1390976/1‑94 (MQ=60)
                                    CTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAA                                                       <  SRR4302542.3567569/94‑1 (MQ=60)
                                    CTGGCTGGACGCGGTGCAGGAGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAA                                                       >  SRR4302542.4896005/1‑94 (MQ=60)
                                     TGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAAT                                                      <  SRR4302542.2217499/94‑1 (MQ=60)
                                     TGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAAT                                                      >  SRR4302542.678679/1‑94 (MQ=60)
                                      GGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATG                                                     <  SRR4302542.4375094/94‑1 (MQ=60)
                                      GGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATG                                                     <  SRR4302542.588839/94‑1 (MQ=60)
                                       GCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGG                                                    <  SRR4302542.4681485/94‑1 (MQ=60)
                                       GCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGG                                                    <  SRR4302542.827893/94‑1 (MQ=60)
                                         TGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGC                                                  <  SRR4302542.2838785/94‑1 (MQ=60)
                                          GGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCA                                                 <  SRR4302542.1983478/94‑1 (MQ=60)
                                          GGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCA                                                 >  SRR4302542.1072716/1‑94 (MQ=60)
                                          GGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCA                                                 >  SRR4302542.2415875/1‑94 (MQ=60)
                                           GACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAA                                                <  SRR4302542.7133850/94‑1 (MQ=60)
                                            ACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAAC                                               <  SRR4302542.1078672/94‑1 (MQ=60)
                                            ACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAAC                                               <  SRR4302542.2437078/94‑1 (MQ=60)
                                            ACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAAC                                               >  SRR4302542.2067214/1‑94 (MQ=60)
                                            ACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAAC                                               <  SRR4302542.6551772/94‑1 (MQ=60)
                                             CGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACA                                              >  SRR4302542.5460092/1‑94 (MQ=60)
                                             CGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACA                                              <  SRR4302542.6256234/94‑1 (MQ=60)
                                             CGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACA                                              >  SRR4302542.814122/1‑94 (MQ=60)
                                              GCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAC                                             <  SRR4302542.5764476/94‑1 (MQ=60)
                                              GCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACAC                                             <  SRR4302542.5764475/94‑1 (MQ=60)
                                               CGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACC                                            >  SRR4302542.6621326/1‑94 (MQ=60)
                                               CGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACC                                            <  SRR4302542.39289/94‑1 (MQ=60)
                                               CGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACC                                            <  SRR4302542.2978030/94‑1 (MQ=60)
                                                GGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCG                                           >  SRR4302542.4754320/1‑94 (MQ=60)
                                                GGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCG                                           <  SRR4302542.7122392/94‑1 (MQ=60)
                                                GGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCG                                           >  SRR4302542.2403399/1‑94 (MQ=60)
                                                GGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCG                                           >  SRR4302542.7295961/1‑94 (MQ=60)
                                                GGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCG                                           >  SRR4302542.7295960/1‑94 (MQ=60)
                                                GGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCG                                           >  SRR4302542.6263982/1‑94 (MQ=60)
                                                 GTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGC                                          >  SRR4302542.4500070/1‑94 (MQ=60)
                                                  TGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCC                                         <  SRR4302542.3498162/94‑1 (MQ=60)
                                                  TGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCC                                         <  SRR4302542.2972190/94‑1 (MQ=60)
                                                  TGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCC                                         <  SRR4302542.1707086/94‑1 (MQ=60)
                                                  TGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCC                                         >  SRR4302542.979710/1‑94 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      >  SRR4302542.615832/1‑94 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      >  SRR4302542.4670604/1‑94 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      >  SRR4302542.1050931/1‑94 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      <  SRR4302542.4021309/94‑1 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      <  SRR4302542.1374349/94‑1 (MQ=60)
                                                     AGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCG                                      <  SRR4302542.662741/94‑1 (MQ=60)
                                                      GGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGC                                     >  SRR4302542.6613890/1‑94 (MQ=60)
                                                      GGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGC                                     >  SRR4302542.5082318/1‑94 (MQ=60)
                                                       GTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCT                                    <  SRR4302542.2563595/94‑1 (MQ=60)
                                                        TGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTT                                   <  SRR4302542.4334756/94‑1 (MQ=60)
                                                        TGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTT                                   <  SRR4302542.5905379/94‑1 (MQ=60)
                                                        TGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTT                                   >  SRR4302542.3408017/1‑94 (MQ=60)
                                                        TGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTT                                   >  SRR4302542.2197726/1‑94 (MQ=60)
                                                         GCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTA                                  <  SRR4302542.2716322/94‑1 (MQ=60)
                                                         GCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTA                                  <  SRR4302542.3863518/94‑1 (MQ=60)
                                                          CTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAA                                 >  SRR4302542.5913533/1‑94 (MQ=60)
                                                          CTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAA                                 >  SRR4302542.3435817/1‑94 (MQ=60)
                                                          CTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAA                                 >  SRR4302542.6527073/1‑94 (MQ=60)
                                                          CTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAA                                 <  SRR4302542.4819401/94‑1 (MQ=60)
                                                          CTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAA                                 >  SRR4302542.7516970/1‑94 (MQ=60)
                                                          CTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAA                                 <  SRR4302542.3143908/94‑1 (MQ=60)
                                                           TGAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAA                                >  SRR4302542.5271765/1‑94 (MQ=60)
                                                            GAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAAC                               <  SRR4302542.5248166/94‑1 (MQ=60)
                                                            GAGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAAC                               <  SRR4302542.6570784/94‑1 (MQ=60)
                                                             AGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACG                              >  SRR4302542.1294954/1‑94 (MQ=60)
                                                             AGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACG                              <  SRR4302542.7533007/94‑1 (MQ=60)
                                                             AGCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACG                              >  SRR4302542.3134149/1‑94 (MQ=60)
                                                              GCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGA                             >  SRR4302542.5998671/1‑94 (MQ=60)
                                                              GCTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGA                             <  SRR4302542.4385641/94‑1 (MQ=60)
                                                               CTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCaaagttgttttac                            <  SRR4302542.1988677/94‑14 (MQ=60)
                                                               CTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAT                            <  SRR4302542.374485/94‑1 (MQ=60)
                                                               CTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAT                            >  SRR4302542.7368812/1‑94 (MQ=60)
                                                               CTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAT                            <  SRR4302542.4370158/94‑1 (MQ=60)
                                                               CTGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGAT                            >  SRR4302542.257894/1‑94 (MQ=60)
                                                                TGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATA                           >  SRR4302542.5632480/1‑94 (MQ=60)
                                                                TGATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATA                           >  SRR4302542.5288491/1‑94 (MQ=60)
                                                                 GATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATAC                          <  SRR4302542.1615416/94‑1 (MQ=60)
                                                                 GATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATAC                          >  SRR4302542.3385203/1‑94 (MQ=60)
                                                                  ATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACA                         <  SRR4302542.2335614/94‑1 (MQ=60)
                                                                  ATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACA                         >  SRR4302542.3366518/1‑94 (MQ=60)
                                                                  ATGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACA                         >  SRR4302542.4928594/1‑94 (MQ=60)
                                                                   TGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTTGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACAT                        <  SRR4302542.2078635/94‑1 (MQ=60)
                                                                   TGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACAT                        >  SRR4302542.3459749/1‑94 (MQ=60)
                                                                   TGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACAT                        >  SRR4302542.19910/1‑94 (MQ=60)
                                                                   TGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACAT                        <  SRR4302542.1573802/94‑1 (MQ=60)
                                                                   TGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACAT                        <  SRR4302542.6817301/94‑1 (MQ=60)
                                                                   TGCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACAT                        <  SRR4302542.3111304/94‑1 (MQ=60)
                                                                    GCAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATA                       >  SRR4302542.6204886/1‑94 (MQ=60)
                                                                     CAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGCCCCAAATGGGCAACACCGCCGCGCTTAAACGATACATAC                      <  SRR4302542.5906464/94‑1 (MQ=60)
                                                                     CAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATAC                      <  SRR4302542.977692/94‑1 (MQ=60)
                                                                     CAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATAC                      >  SRR4302542.6115841/1‑94 (MQ=60)
                                                                     CAAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATAC                      <  SRR4302542.550037/94‑1 (MQ=60)
                                                                      AAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACA                     >  SRR4302542.3793/1‑94 (MQ=60)
                                                                      AAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACA                     >  SRR4302542.3260135/1‑94 (MQ=60)
                                                                      AAACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACA                     <  SRR4302542.4903479/94‑1 (MQ=60)
                                                                       AACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAA                    >  SRR4302542.6867714/1‑94 (MQ=60)
                                                                        ACGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAA                   <  SRR4302542.3143566/94‑1 (MQ=60)
                                                                         CGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAG                  <  SRR4302542.1582965/94‑1 (MQ=60)
                                                                         CGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAG                  >  SRR4302542.3514264/1‑94 (MQ=60)
                                                                         CGGCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAG                  <  SRR4302542.79199/94‑1 (MQ=60)
                                                                           GCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTG                >  SRR4302542.5386312/1‑94 (MQ=60)
                                                                           GCGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTG                <  SRR4302542.2353343/94‑1 (MQ=60)
                                                                            CGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGG               >  SRR4302542.1179113/1‑94 (MQ=60)
                                                                            CGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGG               <  SRR4302542.3688839/94‑1 (MQ=60)
                                                                            CGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGG               <  SRR4302542.6408422/94‑1 (MQ=60)
                                                                            CGCTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGG               <  SRR4302542.6487382/94‑1 (MQ=60)
                                                                            CGCTAAACTGGGCGTATGCTCCCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGG               >  SRR4302542.7131169/1‑94 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTG             <  SRR4302542.596370/94‑1 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTG             >  SRR4302542.1309698/1‑94 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTG             <  SRR4302542.894471/94‑1 (MQ=60)
                                                                              CTAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTG             <  SRR4302542.6507590/94‑1 (MQ=60)
                                                                               TAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGC            <  SRR4302542.7359481/94‑1 (MQ=60)
                                                                               TAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGC            <  SRR4302542.6314797/94‑1 (MQ=60)
                                                                               TAAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGC            >  SRR4302542.7080281/1‑94 (MQ=60)
                                                                                AAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCG           <  SRR4302542.30697/94‑1 (MQ=60)
                                                                                AAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCG           >  SRR4302542.3259573/1‑94 (MQ=60)
                                                                                AAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCG           <  SRR4302542.571213/94‑1 (MQ=60)
                                                                                AAACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCG           <  SRR4302542.471889/94‑1 (MQ=60)
                                                                                 AACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGA          >  SRR4302542.6983396/1‑94 (MQ=60)
                                                                                 AACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGA          <  SRR4302542.3308362/94‑1 (MQ=60)
                                                                                 AACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGA          >  SRR4302542.1192088/1‑94 (MQ=60)
                                                                                 AACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGA          >  SRR4302542.2680890/1‑94 (MQ=60)
                                                                                 AACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGA          <  SRR4302542.3950896/94‑1 (MQ=60)
                                                                                 AACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGA          <  SRR4302542.1859639/94‑1 (MQ=60)
                                                                                  ACTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGGGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAA         >  SRR4302542.745929/1‑94 (MQ=60)
                                                                                   CTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAAT        >  SRR4302542.1291396/1‑94 (MQ=60)
                                                                                   CTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAAT        >  SRR4302542.5420846/1‑94 (MQ=60)
                                                                                   CTGGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAAT        >  SRR4302542.657820/1‑94 (MQ=60)
                                                                                     GGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGT      >  SRR4302542.2084314/1‑94 (MQ=60)
                                                                                     GGGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGT      >  SRR4302542.1295129/1‑94 (MQ=60)
                                                                                      GGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTA     >  SRR4302542.6559363/1‑94 (MQ=60)
                                                                                      GGCGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTA     <  SRR4302542.4093829/94‑1 (MQ=60)
                                                                                        CGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGA   <  SRR4302542.6447197/94‑1 (MQ=60)
                                                                                        CGTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGA   <  SRR4302542.3931096/94‑1 (MQ=60)
                                                                                         GTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAACGTGTGGCGAATGTAGAA  >  SRR4302542.6760810/1‑94 (MQ=60)
                                                                                         GTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  >  SRR4302542.6760808/1‑94 (MQ=60)
                                                                                         GTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  <  SRR4302542.6698288/94‑1 (MQ=60)
                                                                                         GTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  <  SRR4302542.3716269/94‑1 (MQ=60)
                                                                                         GTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  <  SRR4302542.1529959/94‑1 (MQ=60)
                                                                                         GTATGCTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  <  SRR4302542.3864181/94‑1 (MQ=60)
                                                                                             |                                                                                         
CGGGAACTCAATGCGACAGATGCGCGAATTGGCCTGCTGGCTGGACGCGGTGCAGGTGCTGAGCTGATGCAAACGGCGCTAAACTGGGCGTATCGTCGCGGTAAAACAACTTTGCGGGTGGCGACCCAAATGGGCAACACCGCCGCGCTTAAACGATACATACAAAGTGGTGCGAATGTAGAA  >  NC_000913/3972544‑3972726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑