Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,162,448 |
A→G |
T411A (ACA→GCA) |
btuB → |
BtuB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,162,448 | 0 | A | G | 84.4%
| 632.5
/ 105.3
| 275 | T411A (ACA→GCA) | btuB | BtuB |
| Reads supporting (aligned to +/- strand): ref base A (24/19); new base G (118/114); total (142/133) |
| Fisher's exact test for biased strand distribution p-value = 6.19e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.63e-01 |
Only 100 of 279 total aligned reads displayed.
ACGATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCGCG > NC_000913/4162356‑4162540
|
gATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCa > 2:5644612/1‑93 (MQ=255)
aTAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCAt > 1:1936699/1‑93 (MQ=255)
tAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATc > 1:1001630/1‑93 (MQ=255)
tAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATc < 1:2825738/93‑1 (MQ=255)
aaCTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCt > 2:3261195/1‑93 (MQ=255)
tCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTtat < 2:3719762/93‑1 (MQ=255)
tCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTtat > 2:264359/1‑93 (MQ=255)
cacaGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTtata < 1:2923671/93‑1 (MQ=255)
acaGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATaa > 2:6536786/1‑93 (MQ=255)
caGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAg > 1:3170965/1‑93 (MQ=255)
aGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAgg > 1:1477715/1‑93 (MQ=255)
aGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAgg > 1:6677400/1‑93 (MQ=255)
gTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGc > 1:3802564/1‑93 (MQ=255)
gTTGGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCAAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGc > 1:6974107/1‑93 (MQ=255)
tttGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCa < 2:3419528/93‑1 (MQ=255)
tttGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCa < 2:547777/93‑1 (MQ=255)
ttGGTCGTCATAGAGCCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCAc < 2:2803808/93‑1 (MQ=255)
tGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCAcc > 1:2226185/1‑93 (MQ=255)
ggTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCa > 2:4581520/1‑93 (MQ=255)
tcATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCt < 1:959393/93‑1 (MQ=255)
tcATGGAACCTGGCAAACCAGCGCCGGTTGGAAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCt > 1:6183547/1‑93 (MQ=255)
aTGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTgg < 1:4051537/93‑1 (MQ=255)
aTGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTgg < 2:173256/93‑1 (MQ=255)
aTGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTgg < 2:4936118/93‑1 (MQ=255)
tGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTggg < 1:2429510/93‑1 (MQ=255)
tGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTggg > 1:5421368/1‑93 (MQ=255)
tGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTggg < 1:3522296/93‑1 (MQ=255)
ggAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTgggg > 2:7363731/1‑93 (MQ=255)
ccTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAAc < 1:2891568/93‑1 (MQ=255)
tGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTg > 2:4773478/1‑93 (MQ=255)
tGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTg > 1:3024659/1‑93 (MQ=255)
ggCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGt < 2:5875059/93‑1 (MQ=255)
gCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTa > 2:7297288/1‑93 (MQ=255)
gCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTa < 2:6746740/93‑1 (MQ=255)
gCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTCATAAGGCACCAAATCTGGGGCAACTGTa > 2:2292421/1‑93 (MQ=255)
aaaCCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATg < 2:7016280/93‑1 (MQ=255)
aaCCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATgg > 1:3657506/1‑93 (MQ=255)
aaCCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATgg < 2:7228557/93‑1 (MQ=255)
aaCCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATgg > 1:6514725/1‑93 (MQ=255)
aCCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGc < 1:7305936/93‑1 (MQ=255)
gcCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTAc > 1:1356163/1‑93 (MQ=255)
gTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGaa > 1:1810936/1‑93 (MQ=255)
ttGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGaaa < 2:487347/93‑1 (MQ=255)
gggAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATc < 2:6318220/93‑1 (MQ=255)
gggAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATc > 1:4597858/1‑93 (MQ=255)
gggAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATc < 1:3416146/93‑1 (MQ=255)
ggAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATcc < 1:5119494/93‑1 (MQ=255)
ggAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATcc < 1:4876765/93‑1 (MQ=255)
gAATTCATCGAAGGATATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCg > 2:5180122/1‑93 (MQ=255)
aTTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGaa > 2:6176521/1‑93 (MQ=255)
aTTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGaa < 2:4110856/93‑1 (MQ=255)
aTTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGaa < 1:5460360/93‑1 (MQ=255)
tCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTgg > 2:2991072/1‑93 (MQ=255)
cGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGa < 2:3949003/93‑1 (MQ=255)
gAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGAc > 1:6391192/1‑93 (MQ=255)
gAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGAc > 1:1245483/1‑93 (MQ=255)
gAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGAc < 1:2725175/93‑1 (MQ=255)
aGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGAccc > 1:1165251/1‑93 (MQ=255)
ggTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCg > 2:1094297/1‑93 (MQ=255)
ggTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCg > 1:4719316/1‑93 (MQ=255)
gTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCgg > 2:1863172/1‑93 (MQ=255)
gTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCgg > 2:3888464/1‑93 (MQ=255)
gTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCgg < 1:739522/93‑1 (MQ=255)
ttATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGga < 2:304241/93‑1 (MQ=255)
tATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGgag > 1:5511506/1‑93 (MQ=255)
tATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGgag > 1:937921/1‑93 (MQ=255)
tCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGaa > 2:1166364/1‑93 (MQ=255)
tCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGaa > 1:5684330/1‑93 (MQ=255)
gCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGaaaa > 1:2470859/1‑93 (MQ=255)
cTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAg < 1:6047193/93‑1 (MQ=255)
cTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAg < 2:3170965/93‑1 (MQ=255)
ttCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGc > 2:7455658/1‑93 (MQ=255)
ttCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGc < 1:3675913/93‑1 (MQ=255)
tCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCa > 2:4263901/1‑93 (MQ=255)
tCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCa > 2:4396506/1‑93 (MQ=255)
tCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCa > 1:516616/1‑93 (MQ=255)
cATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCaa > 1:5802725/1‑93 (MQ=255)
tGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACa < 2:5039376/93‑1 (MQ=255)
gCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAg < 2:1488545/93‑1 (MQ=255)
gCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAg < 1:5995163/93‑1 (MQ=255)
gCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAg > 1:5031624/1‑93 (MQ=255)
gCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAg > 1:2003861/1‑93 (MQ=255)
cTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGt < 1:848218/93‑1 (MQ=255)
ttCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTg < 1:4973870/93‑1 (MQ=255)
ttCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTg > 1:2783250/1‑93 (MQ=255)
ttCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACGGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAAccgcg > 1:7165840/1‑89 (MQ=255)
ttCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTg > 1:110022/1‑93 (MQ=255)
tCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTgg < 2:3610049/93‑1 (MQ=255)
tCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTgg < 1:7109480/93‑1 (MQ=255)
cTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGa > 1:996514/1‑93 (MQ=255)
tACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCt < 2:1388180/65‑1 (MQ=255)
tACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCt > 1:1388180/1‑65 (MQ=255)
tACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGaa < 2:6328941/93‑1 (MQ=255)
tACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGaa < 1:6960759/93‑1 (MQ=255)
tACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGaa > 1:6232186/1‑93 (MQ=255)
tACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGaa < 1:4501575/93‑1 (MQ=255)
tACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGaa < 1:1605698/93‑1 (MQ=255)
tACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGaa > 2:798548/1‑93 (MQ=255)
cGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAgg < 2:4164618/93‑1 (MQ=255)
ggggCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGgc > 2:5715784/1‑93 (MQ=255)
|
ACGATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCGCG > NC_000913/4162356‑4162540
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACGATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCGC > NC_000913/4162355‑4162539
|
GACGATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGG < SRR4302542.5900710/94‑1 (MQ=60)
GATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCAT < SRR4302542.966327/94‑1 (MQ=60)
GATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCAT < SRR4302542.879592/94‑1 (MQ=60)
GATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCAT > SRR4302542.1953416/1‑94 (MQ=60)
GATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCAT > SRR4302542.5039967/1‑94 (MQ=60)
GATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACAT > SRR4302542.7189354/1‑94 (MQ=60)
GATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACAT < SRR4302542.2249190/94‑1 (MQ=60)
ATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATC > SRR4302542.152773/1‑94 (MQ=60)
ATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATC < SRR4302542.5208207/94‑1 (MQ=60)
ATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATC > SRR4302542.2744049/1‑94 (MQ=60)
ATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATC > SRR4302542.1010248/1‑94 (MQ=60)
TAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCT < SRR4302542.2852904/94‑1 (MQ=60)
AACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTT > SRR4302542.3994663/1‑94 (MQ=60)
ACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTA > SRR4302542.2016618/1‑94 (MQ=60)
ACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTA < SRR4302542.7247039/94‑1 (MQ=60)
CTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTAT > SRR4302542.5082426/1‑94 (MQ=60)
CTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTAT > SRR4302542.5485110/1‑94 (MQ=60)
CTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTAT < SRR4302542.995754/94‑1 (MQ=60)
CACGGTTTGGTCGTCATGGAACCTGGCAAGCCAGCGCCGGGTGGGAATTCGGCGAAGGTTATCTCTTCATTGCTTCCTGCGGGGCATCTTATAA < SRR4302542.2951681/94‑1 (MQ=60)
CACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAA < SRR4302542.2951682/94‑1 (MQ=60)
CACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAA < SRR4302542.7145323/94‑1 (MQ=60)
ACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAG < SRR4302542.6790862/94‑1 (MQ=60)
ACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAG > SRR4302542.3201039/1‑94 (MQ=60)
CAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGG > SRR4302542.6743181/1‑94 (MQ=60)
CAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGG > SRR4302542.3528791/1‑94 (MQ=60)
CAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGG > SRR4302542.1490464/1‑94 (MQ=60)
CAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGG < SRR4302542.2811683/94‑1 (MQ=60)
AGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGC > SRR4302542.3840202/1‑94 (MQ=60)
AGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGC < SRR4302542.987758/94‑1 (MQ=60)
AGTTGGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCAAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGC > SRR4302542.7042613/1‑94 (MQ=60)
GTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCA < SRR4302542.4785429/94‑1 (MQ=60)
GTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCA > SRR4302542.946998/1‑94 (MQ=60)
TTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCAC > SRR4302542.6400577/1‑94 (MQ=60)
TTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACC > SRR4302542.7440387/1‑94 (MQ=60)
TTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACC < SRR4302542.3504834/94‑1 (MQ=60)
TTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACC > SRR4302542.2245338/1‑94 (MQ=60)
TTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGCCACC > SRR4302542.2926070/1‑94 (MQ=60)
TGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCA > SRR4302542.5083209/1‑94 (MQ=60)
TGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCA < SRR4302542.2865058/94‑1 (MQ=60)
TGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCA > SRR4302542.6252139/1‑94 (MQ=60)
GGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAA < SRR4302542.4639745/94‑1 (MQ=60)
GTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAA > SRR4302542.6608925/1‑94 (MQ=60)
GTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAA > SRR4302542.1832518/1‑94 (MQ=60)
CGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATC < SRR4302542.136890/94‑1 (MQ=60)
CGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACAGGGCATCTTATAAGGCACCAAATC > SRR4302542.1558054/1‑94 (MQ=60)
GTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCT < SRR4302542.1283319/94‑1 (MQ=60)
GTCATGGAACCTGGCAAACCAGCGCCGGTTGGAAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCT > SRR4302542.6243547/1‑94 (MQ=60)
TCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTG < SRR4302542.967634/94‑1 (MQ=60)
CATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCAGCAAATCTGG < SRR4302542.1927534/94‑1 (MQ=60)
CATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGG > SRR4302542.7402757/1‑94 (MQ=60)
ATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGG > SRR4302542.5474005/1‑94 (MQ=60)
ATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGG < SRR4302542.4091495/94‑1 (MQ=60)
ATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGG < SRR4302542.5535446/94‑1 (MQ=60)
TGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGG < SRR4302542.2453121/94‑1 (MQ=60)
TGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGG < SRR4302542.3555215/94‑1 (MQ=60)
GGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGC > SRR4302542.3832206/1‑94 (MQ=60)
GAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCA > SRR4302542.2456216/1‑94 (MQ=60)
ACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAAC < SRR4302542.586378/94‑1 (MQ=60)
ACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAAC > SRR4302542.369418/1‑94 (MQ=60)
CCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACT < SRR4302542.2919331/94‑1 (MQ=60)
CCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACT < SRR4302542.4729172/94‑1 (MQ=60)
CTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTG > SRR4302542.3053534/1‑94 (MQ=60)
TGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGT > SRR4302542.1311649/1‑94 (MQ=60)
TGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGT < SRR4302542.2210807/94‑1 (MQ=60)
GCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTAT < SRR4302542.4357172/94‑1 (MQ=60)
CAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATG < SRR4302542.2494259/94‑1 (MQ=60)
CAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATG < SRR4302542.5691617/94‑1 (MQ=60)
AAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGG > SRR4302542.3691855/1‑94 (MQ=60)
AAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGG > SRR4302542.6578928/1‑94 (MQ=60)
AAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGG > SRR4302542.2790198/1‑94 (MQ=60)
ACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCT < SRR4302542.7377504/94‑1 (MQ=60)
ACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCT < SRR4302542.1172688/94‑1 (MQ=60)
CAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTC < SRR4302542.7229641/94‑1 (MQ=60)
CGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTAC > SRR4302542.4930621/1‑94 (MQ=60)
CGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTAC > SRR4302542.1367876/1‑94 (MQ=60)
CGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTAC < SRR4302542.6055125/94‑1 (MQ=60)
CCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGG > SRR4302542.5634278/1‑94 (MQ=60)
GGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAA > SRR4302542.1826629/1‑94 (MQ=60)
TTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAAT < SRR4302542.7278227/94‑1 (MQ=60)
TGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATC > SRR4302542.4642811/1‑94 (MQ=60)
TGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATC < SRR4302542.1045589/94‑1 (MQ=60)
GGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCC < SRR4302542.3448154/94‑1 (MQ=60)
GGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCG < SRR4302542.5169208/94‑1 (MQ=60)
GGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCG < SRR4302542.4924228/94‑1 (MQ=60)
ATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAAT > SRR4302542.3883318/1‑94 (MQ=60)
ATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAAT < SRR4302542.5513408/94‑1 (MQ=60)
TTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATC > SRR4302542.3422230/1‑94 (MQ=60)
TTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATC < SRR4302542.1218217/94‑1 (MQ=60)
TCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCT > SRR4302542.3627417/1‑94 (MQ=60)
TCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCT > SRR4302542.1244739/1‑94 (MQ=60)
CGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGAC > SRR4302542.1256191/1‑94 (MQ=60)
CGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGAC > SRR4302542.6454155/1‑94 (MQ=60)
CGAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCGGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGAC < SRR4302542.2417847/94‑1 (MQ=60)
CGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGAC > SRR4302542.1734129/1‑94 (MQ=60)
GAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACC < SRR4302542.2751467/94‑1 (MQ=60)
GAAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACC < SRR4302542.5824851/94‑1 (MQ=60)
AAGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCC > SRR4302542.1175281/1‑94 (MQ=60)
AGGTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCG > SRR4302542.4765319/1‑94 (MQ=60)
GTTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGA < SRR4302542.745941/94‑1 (MQ=60)
GTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGA > SRR4302542.4928128/1‑94 (MQ=60)
TTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAG > SRR4302542.606763/1‑94 (MQ=60)
TTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAG < SRR4302542.2650168/94‑1 (MQ=60)
TTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAG < SRR4302542.2851837/94‑1 (MQ=60)
TTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAG > SRR4302542.7033284/1‑94 (MQ=60)
TTATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAG > SRR4302542.3036031/1‑94 (MQ=60)
TTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAG > SRR4302542.5565069/1‑94 (MQ=60)
TTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAG > SRR4302542.945998/1‑94 (MQ=60)
TATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGA > SRR4302542.6678700/1‑94 (MQ=60)
TATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGA > SRR4302542.6118402/1‑94 (MQ=60)
TATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGA > SRR4302542.5079197/1‑94 (MQ=60)
ATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAA > SRR4302542.5739525/1‑94 (MQ=60)
ATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAA > SRR4302542.489349/1‑94 (MQ=60)
ATCGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAA > SRR4302542.5943800/1‑94 (MQ=60)
ATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAA < SRR4302542.6945690/94‑1 (MQ=60)
CGCTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAA > SRR4302542.2494840/1‑94 (MQ=60)
CTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGC > SRR4302542.800334/1‑94 (MQ=60)
CTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGC < SRR4302542.1639764/94‑1 (MQ=60)
CTTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGC < SRR4302542.6105725/94‑1 (MQ=60)
TTCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCA > SRR4302542.521092/1‑94 (MQ=60)
TTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCA < SRR4302542.3711581/94‑1 (MQ=60)
TCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAA > SRR4302542.5859036/1‑94 (MQ=60)
TCATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAA < SRR4302542.3443497/94‑1 (MQ=60)
CATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAA < SRR4302542.3773056/94‑1 (MQ=60)
CATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAA > SRR4302542.5287898/1‑94 (MQ=60)
ATTGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTACGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAAC > SRR4302542.5476732/1‑94 (MQ=60)
TGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGTAAACAG < SRR4302542.1450845/94‑1 (MQ=60)
TGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAG < SRR4302542.6523205/94‑1 (MQ=60)
TGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAG > SRR4302542.5080470/1‑94 (MQ=60)
TGCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAG > SRR4302542.2021164/1‑94 (MQ=60)
GCTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGT < SRR4302542.6053232/94‑1 (MQ=60)
CTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTG < SRR4302542.1152086/94‑1 (MQ=60)
CTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTG < SRR4302542.552744/94‑1 (MQ=60)
CTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTG > SRR4302542.5455844/1‑94 (MQ=60)
CTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTG > SRR4302542.3156393/1‑94 (MQ=60)
CTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTG < SRR4302542.855533/94‑1 (MQ=60)
CTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTG > SRR4302542.2810050/1‑94 (MQ=60)
CTTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACGGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACcgcg > SRR4302542.7236133/1‑90 (MQ=60)
CTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTG < SRR4302542.4595303/94‑1 (MQ=60)
CTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTG > SRR4302542.110923/1‑94 (MQ=60)
TTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGG < SRR4302542.5022159/94‑1 (MQ=60)
TTCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGG < SRR4302542.6309699/94‑1 (MQ=60)
TCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGG < SRR4302542.7179266/94‑1 (MQ=60)
TCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGG < SRR4302542.2882069/94‑1 (MQ=60)
TCCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGG < SRR4302542.6206440/94‑1 (MQ=60)
CCTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGA > SRR4302542.1005087/1‑94 (MQ=60)
CTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGaactctcagatcggaagagcgtcgtgt > SRR4302542.1400169/1‑67 (MQ=60)
CTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAA > SRR4302542.6293543/1‑94 (MQ=60)
CTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAA > SRR4302542.646897/1‑94 (MQ=60)
CTACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAA > SRR4302542.3582059/1‑94 (MQ=60)
TACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAG < SRR4302542.4545720/94‑1 (MQ=60)
TACGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAG < SRR4302542.7029149/94‑1 (MQ=60)
TACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAG < SRR4302542.1619564/94‑1 (MQ=60)
ACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGG > SRR4302542.4416654/1‑94 (MQ=60)
ACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGG < SRR4302542.1452366/94‑1 (MQ=60)
ACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGG > SRR4302542.7071609/1‑94 (MQ=60)
CGGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGC < SRR4302542.3019146/94‑1 (MQ=60)
GGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCG > SRR4302542.645468/1‑94 (MQ=60)
GGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCG > SRR4302542.3847126/1‑94 (MQ=60)
GGGGCATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCG > SRR4302542.2523496/1‑94 (MQ=60)
GGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCG > SRR4302542.905493/1‑94 (MQ=60)
GGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCGC > SRR4302542.2188788/1‑94 (MQ=60)
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GACGATAACTCACAGTTTGGTCGTCATGGAACCTGGCAAACCAGCGCCGGTTGGGAATTCATCGAAGGTTATCGCTTCATTGCTTCCTACGGGACATCTTATAAGGCACCAAATCTGGGGCAACTGTATGGCTTCTACGGAAATCCGAATCTGGACCCGGAGAAAAGCAAACAGTGGGAAGGCGC > NC_000913/4162355‑4162539
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
