Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,235,656 |
(G)5→6 |
coding (444/2097 nt) |
yjbH → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,235,651 | 1 | . | G | 81.8%
| 616.9
/ 136.4
| 220 | coding (439/2097 nt) | yjbH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (18/22); new base G (88/92); total (106/114) |
| Fisher's exact test for biased strand distribution p-value = 7.28e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 |
Only 100 of 263 total aligned reads displayed.
AGAGTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAA > NC_000913/4235559‑4235743
|
agagTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCt < 1:4569952/93‑1 (MQ=255)
agagTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCt < 2:2728797/93‑1 (MQ=255)
agagTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCt > 1:400972/1‑93 (MQ=255)
agagTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCt > 2:4180972/1‑93 (MQ=255)
agagTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCt < 2:6564922/93‑1 (MQ=255)
gagTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑g > 2:962056/1‑93 (MQ=255)
agTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑gg < 2:682272/93‑1 (MQ=255)
agTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑gg < 1:4878606/93‑1 (MQ=255)
agTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑gg < 1:1284370/93‑1 (MQ=255)
gTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑ggg > 1:4786035/1‑93 (MQ=255)
gTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑ggg < 2:3398898/93‑1 (MQ=255)
gTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑ggg < 1:2324648/93‑1 (MQ=255)
ttACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑gggg < 2:4727436/93‑1 (MQ=255)
ttACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑gggg < 2:4252202/93‑1 (MQ=255)
ttACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑gggg > 2:7005953/1‑93 (MQ=255)
aCTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑gggggg < 1:2250849/93‑2 (MQ=255)
tGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTc > 2:3359675/1‑93 (MQ=255)
cGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGAt > 2:4870382/1‑93 (MQ=255)
cAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGAttt > 1:1571590/1‑93 (MQ=255)
cAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGAttt > 2:4974731/1‑93 (MQ=255)
aGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTa < 1:1073974/93‑1 (MQ=255)
aGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTAc > 1:653739/1‑93 (MQ=255)
tGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACg > 2:3773725/1‑93 (MQ=255)
tGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACg < 2:3737468/93‑1 (MQ=255)
tGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGc > 2:1384052/1‑93 (MQ=255)
gCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTc < 2:5239082/93‑1 (MQ=255)
ggTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCg > 2:1512694/1‑93 (MQ=255)
ggTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCg < 2:3557496/93‑1 (MQ=255)
gTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCgg > 1:5635995/1‑93 (MQ=255)
ttGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGc > 2:2515530/1‑93 (MQ=255)
ttGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGc > 2:3950913/1‑93 (MQ=255)
ggTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCct < 2:7195025/93‑1 (MQ=255)
ggTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCct > 2:4320746/1‑93 (MQ=255)
gTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCctg < 1:5231337/93‑1 (MQ=255)
gTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCctg > 2:2602095/1‑93 (MQ=255)
gTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCctgg < 2:1229193/93‑1 (MQ=255)
tGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCctgg < 1:5379347/93‑1 (MQ=255)
tGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCctggg > 1:637033/1‑93 (MQ=255)
cgGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCctgggctgg < 2:4563657/93‑1 (MQ=255)
gggATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCctgggctgg < 1:4721726/93‑1 (MQ=255)
ggATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCctgggctggg > 2:6975701/1‑93 (MQ=255)
ggATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCctgggctggg < 2:1706567/93‑1 (MQ=255)
tatCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGt > 2:182038/1‑93 (MQ=255)
tatCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGt > 1:7250452/1‑93 (MQ=255)
tCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTa > 2:5120862/1‑93 (MQ=255)
tCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGCAt > 1:5846978/1‑93 (MQ=255)
tCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTAtt > 1:4456290/1‑93 (MQ=255)
cggcggTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTAtt < 2:3026043/93‑1 (MQ=255)
ggcggTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTAttt < 2:588901/93‑1 (MQ=255)
gcggTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTg > 1:4073459/1‑93 (MQ=255)
gcggTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTg > 1:7173930/1‑93 (MQ=255)
gTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGc < 2:1954345/93‑1 (MQ=255)
gTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGc > 1:522432/1‑93 (MQ=255)
tACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCa > 1:1365311/1‑93 (MQ=255)
tACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCa > 2:34740/1‑93 (MQ=255)
tACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCa < 1:3911478/93‑1 (MQ=255)
tACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGGATTTGGGCa > 1:2646009/1‑93 (MQ=255)
cGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCAcc < 1:956376/93‑1 (MQ=255)
ggggCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCa > 1:4910460/1‑93 (MQ=255)
ggggCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCa < 1:594775/93‑1 (MQ=255)
ggggCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCa > 1:2029917/1‑93 (MQ=255)
gggCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAg > 1:4264301/1‑93 (MQ=255)
ggCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAg > 2:479885/1‑93 (MQ=255)
ggCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCg > 2:2914884/1‑93 (MQ=255)
ggCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCg < 2:3150402/93‑1 (MQ=255)
cTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCgg < 2:56241/93‑1 (MQ=255)
tGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGt < 2:7028874/93‑1 (MQ=255)
tGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGt < 2:5035659/93‑1 (MQ=255)
tGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGt > 2:5791808/1‑93 (MQ=255)
tGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGt > 2:2876809/1‑93 (MQ=255)
tttGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTaa > 2:6523798/1‑93 (MQ=255)
ttGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAAt < 1:6132783/93‑1 (MQ=255)
tGATGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAAtg < 2:6069273/93‑1 (MQ=255)
tGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAAtgt < 1:805770/93‑1 (MQ=255)
tGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAAtgt < 1:239210/93‑1 (MQ=255)
tGCGGAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGa > 2:2319828/1‑93 (MQ=255)
gAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGaaaaa > 1:6726430/1‑93 (MQ=255)
gAATATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGGATTTGGGCACCAGCGGTAATGTGaaaaa > 2:5986395/1‑93 (MQ=255)
aaTATCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAAt < 2:2133163/93‑1 (MQ=255)
atatCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATc > 2:1299167/1‑93 (MQ=255)
atatCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATc < 2:3194432/93‑1 (MQ=255)
atatCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATc < 1:2409420/93‑1 (MQ=255)
atCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCg > 1:1184536/1‑93 (MQ=255)
atCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGCATTTGGGCACCAGCGGTAATGTGAAAAATCCg > 1:3975790/1‑93 (MQ=255)
tCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGc < 1:5065398/93‑1 (MQ=255)
tCTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGc < 1:1636482/93‑1 (MQ=255)
cTTGTTGCCAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGct < 2:5544204/93‑1 (MQ=255)
ccAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCa < 1:7513325/93‑1 (MQ=255)
ccAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCa < 1:3059325/93‑1 (MQ=255)
cAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAg < 1:3607523/93‑1 (MQ=255)
cAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAg > 1:1666129/1‑93 (MQ=255)
cAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAg < 1:2900865/93‑1 (MQ=255)
cAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAg > 2:7468481/1‑93 (MQ=255)
cAGCAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAg > 1:2875673/1‑93 (MQ=255)
cAAAGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCa < 1:980683/93‑1 (MQ=255)
aaaGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAg > 1:5703282/1‑93 (MQ=255)
aaGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGt < 1:582629/93‑1 (MQ=255)
aaGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGt < 2:5679727/93‑1 (MQ=255)
aGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTg < 2:6239646/93‑1 (MQ=255)
aGCCTG‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTg < 2:5199816/93‑1 (MQ=255)
|
AGAGTTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAA > NC_000913/4235559‑4235743
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATTGC > NC_000913/4235563‑4235749
|
TTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGG > SRR4302542.5194318/1‑94 (MQ=60)
TACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGG < SRR4302542.2412283/94‑1 (MQ=60)
TACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGG < SRR4302542.4050850/94‑1 (MQ=60)
ACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGGC < SRR4302542.2270210/94‑1 (MQ=60)
ACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGGC > SRR4302542.7453660/1‑94 (MQ=60)
CTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGgcc > SRR4302542.5378385/1‑91 (MQ=60)
CTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGgcc > SRR4302542.4376918/1‑91 (MQ=60)
TGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCG < SRR4302542.3984716/94‑1 (MQ=60)
GCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTT > SRR4302542.1286090/1‑94 (MQ=60)
GCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTT < SRR4302542.2554503/94‑1 (MQ=60)
TGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCG < SRR4302542.7264385/94‑1 (MQ=60)
GCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGA > SRR4302542.2469850/1‑94 (MQ=60)
CGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATT < SRR4302542.800505/94‑1 (MQ=60)
GCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTT > SRR4302542.1585159/1‑94 (MQ=60)
GCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTT < SRR4302542.4792610/94‑1 (MQ=60)
AAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTAC > SRR4302542.659385/1‑94 (MQ=60)
AGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTAC < SRR4302542.4732814/94‑1 (MQ=60)
AGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTAC < SRR4302542.2816419/94‑1 (MQ=60)
AGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTAC < SRR4302542.1083207/94‑1 (MQ=60)
GTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACG > SRR4302542.5801483/1‑94 (MQ=60)
GGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTC < SRR4302542.1632526/94‑1 (MQ=60)
GCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCG < SRR4302542.1244495/94‑1 (MQ=60)
GGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGG > SRR4302542.5690717/1‑94 (MQ=60)
GGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGG < SRR4302542.914245/94‑1 (MQ=60)
TGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCT < SRR4302542.2280221/94‑1 (MQ=60)
TGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTG < SRR4302542.4012064/94‑1 (MQ=60)
GTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGG < SRR4302542.5282209/94‑1 (MQ=60)
GTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGG > SRR4302542.642510/1‑94 (MQ=60)
TGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGG < SRR4302542.5995426/94‑1 (MQ=60)
TGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGG < SRR4302542.5431609/94‑1 (MQ=60)
GGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGG > SRR4302542.1702253/1‑94 (MQ=60)
GGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGG < SRR4302542.1572641/94‑1 (MQ=60)
GGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGG < SRR4302542.4767749/94‑1 (MQ=60)
GGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGG < SRR4302542.6563583/94‑1 (MQ=60)
ATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGT > SRR4302542.4547712/1‑94 (MQ=60)
ATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGT > SRR4302542.7321543/1‑94 (MQ=60)
ATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGG > SRR4302542.5858237/1‑94 (MQ=60)
ATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTAT > SRR4302542.3595245/1‑94 (MQ=60)
ATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGCAT > SRR4302542.5903684/1‑94 (MQ=60)
ATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATT > SRR4302542.4499999/1‑94 (MQ=60)
TCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATT < SRR4302542.1671034/94‑1 (MQ=60)
GGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTG > SRR4302542.7244302/1‑94 (MQ=60)
GGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTG > SRR4302542.4113621/1‑94 (MQ=60)
GGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTG > SRR4302542.5607427/1‑94 (MQ=60)
GGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTG < SRR4302542.4931443/94‑1 (MQ=60)
GGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGG < SRR4302542.4606912/94‑1 (MQ=60)
GGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGC > SRR4302542.526954/1‑94 (MQ=60)
GTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCA > SRR4302542.1377113/1‑94 (MQ=60)
GTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGGATTTGGGCA > SRR4302542.2671552/1‑94 (MQ=60)
TACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCAC < SRR4302542.3950078/94‑1 (MQ=60)
TACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCAC > SRR4302542.5332878/1‑94 (MQ=60)
TACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCAC < SRR4302542.2920049/94‑1 (MQ=60)
ACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCA > SRR4302542.1489649/1‑94 (MQ=60)
CGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCA < SRR4302542.964583/94‑1 (MQ=60)
CGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCA > SRR4302542.2047482/1‑94 (MQ=60)
CGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCA > SRR4302542.4958219/1‑94 (MQ=60)
GGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAG > SRR4302542.4306272/1‑94 (MQ=60)
GGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAG < SRR4302542.599904/94‑1 (MQ=60)
GGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGC > SRR4302542.1606543/1‑94 (MQ=60)
GGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGC > SRR4302542.6732853/1‑94 (MQ=60)
GGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGC > SRR4302542.5889233/1‑94 (MQ=60)
GGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCG < SRR4302542.4026811/94‑1 (MQ=60)
GGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCG < SRR4302542.2135878/94‑1 (MQ=60)
TGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTA > SRR4302542.2677880/1‑94 (MQ=60)
TTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAAT < SRR4302542.2360298/94‑1 (MQ=60)
TTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAAT < SRR4302542.5277027/94‑1 (MQ=60)
TTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATG < SRR4302542.4297636/94‑1 (MQ=60)
TTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATG < SRR4302542.6192115/94‑1 (MQ=60)
TTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATG < SRR4302542.4939007/94‑1 (MQ=60)
TGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGT < SRR4302542.6278111/94‑1 (MQ=60)
TGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGT > SRR4302542.1185282/1‑94 (MQ=60)
TGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTG < SRR4302542.241264/94‑1 (MQ=60)
TGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTG < SRR4302542.812699/94‑1 (MQ=60)
TGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTG > SRR4302542.6178294/1‑94 (MQ=60)
ATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTAGGGCACCAGCGGTAATGTGA > SRR4302542.4837637/1‑94 (MQ=60)
CGGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAA < SRR4302542.1969823/94‑1 (MQ=60)
GGAATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAA > SRR4302542.6792654/1‑94 (MQ=60)
ATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCC < SRR4302542.2432854/94‑1 (MQ=60)
ATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCC > SRR4302542.3515514/1‑94 (MQ=60)
ATATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCC < SRR4302542.295580/94‑1 (MQ=60)
TATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCG > SRR4302542.1194755/1‑94 (MQ=60)
TATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGCATTTGGGCACCAGCGGTAATGTGAAAAATCCG > SRR4302542.4015017/1‑94 (MQ=60)
ATCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGC < SRR4302542.4758760/94‑1 (MQ=60)
TCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCT < SRR4302542.5114626/94‑1 (MQ=60)
TCTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCT < SRR4302542.1650630/94‑1 (MQ=60)
CTTGTTGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTC > SRR4302542.2416320/1‑94 (MQ=60)
CTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCT < SRR4302542.671971/94‑1 (MQ=60)
TTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTC < SRR4302542.5890727/94‑1 (MQ=60)
TGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTC > SRR4302542.7345961/1‑94 (MQ=60)
TGCCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTC > SRR4302542.6095330/1‑94 (MQ=60)
CCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAG < SRR4302542.7587215/94‑1 (MQ=60)
CCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAG > SRR4302542.1680516/1‑94 (MQ=60)
CCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAG < SRR4302542.3088502/94‑1 (MQ=60)
CCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAG > SRR4302542.2903283/1‑94 (MQ=60)
CCAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAG < SRR4302542.7242626/94‑1 (MQ=60)
CCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGAATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGC > SRR4302542.7290413/1‑94 (MQ=60)
CAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGC < SRR4302542.3641138/94‑1 (MQ=60)
CAGCAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGC < SRR4302542.2928708/94‑1 (MQ=60)
GAAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAG < SRR4302542.2451083/94‑1 (MQ=60)
CAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAG < SRR4302542.989130/94‑1 (MQ=60)
CAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAG > SRR4302542.5758639/1‑94 (MQ=60)
CAAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAG < SRR4302542.5035487/94‑1 (MQ=60)
AAAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGT > SRR4302542.854831/1‑94 (MQ=60)
AAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTG < SRR4302542.5185842/94‑1 (MQ=60)
AAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTG < SRR4302542.587659/94‑1 (MQ=60)
AAGCCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTG < SRR4302542.574157/94‑1 (MQ=60)
CCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATA > SRR4302542.6474804/1‑94 (MQ=60)
CCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATA > SRR4302542.4744991/1‑94 (MQ=60)
CCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATA > SRR4302542.4543720/1‑94 (MQ=60)
CCTGGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATA > SRR4302542.7503040/1‑94 (MQ=60)
ctgGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAA > SRR4302542.2472757/4‑94 (MQ=60)
tgGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCGCCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAA < SRR4302542.6592090/92‑1 (MQ=60)
tgGGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAA < SRR4302542.2523136/92‑1 (MQ=60)
G‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAAT < SRR4302542.5026386/94‑1 (MQ=60)
GGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATAT < SRR4302542.3167248/94‑1 (MQ=60)
GGGGCCGTTCGATTTTACGCTCGCCCTGGGCTGGGGGATTTTGGGAACAACGGGAAATGGGAAAAATCCGCCCTGTTCAGCCAGggtaaaatat > SRR4302542.5590511/1‑84 (MQ=25)
GGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATT < SRR4302542.6983201/94‑1 (MQ=60)
GGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATTG > SRR4302542.2797261/1‑94 (MQ=60)
GGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATTG > SRR4302542.262877/1‑94 (MQ=60)
GGCCGATCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATTG < SRR4302542.1342990/94‑1 (MQ=60)
GCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATTGC > SRR4302542.3209530/1‑94 (MQ=60)
|
TTACTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGGGGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCT‑GGGGGCCGTTCGATTTTACGCTCGGCCTGGGCTGGGGGTATTTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATTGC > NC_000913/4235563‑4235749
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
