Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,248,121 |
T→C |
intergenic (+68/‑161) |
malM → / → b4559 |
MalM/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,248,121 | 0 | T | C | 83.8%
| 540.7
/ 101.0
| 241 | intergenic (+68/‑161) | malM/b4559 | MalM/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (19/20); new base C (98/104); total (117/124) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.99e-01 |
Only 100 of 262 total aligned reads displayed.
AGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCT > NC_000913/4248030‑4248212
|
gcagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGcttccctc > 1:2033318/1‑93 (MQ=255)
cagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCttccttcc < 2:7497969/93‑1 (MQ=255)
cagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCttccctcc < 2:5975117/93‑1 (MQ=255)
cagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCttccctcc > 2:5436813/1‑93 (MQ=255)
cagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCttccctcc < 2:5067635/93‑1 (MQ=255)
agTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTtccctcct > 2:2733131/1‑93 (MQ=255)
gtgtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACTTTTTTTTATGCTTCCCTCCTg < 2:5295357/93‑1 (MQ=255)
tgtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTgg > 2:6080431/1‑93 (MQ=255)
tgtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTgg > 2:35707/1‑93 (MQ=255)
tgtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTgg > 1:7448131/1‑93 (MQ=255)
tgtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTgg > 1:958706/1‑93 (MQ=255)
tgtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTgg > 1:32808/1‑93 (MQ=255)
tgtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTgg > 2:4826478/1‑93 (MQ=255)
gtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTggg > 2:1952226/1‑93 (MQ=255)
gtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTggg > 2:6886741/1‑93 (MQ=255)
aGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATg < 2:1417983/93‑1 (MQ=255)
ggCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGa < 1:4346442/93‑1 (MQ=255)
cAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGc < 2:4502438/93‑1 (MQ=255)
cAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGc < 1:204140/93‑1 (MQ=255)
aaGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCg > 2:5586380/1‑93 (MQ=255)
ggggTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGAt > 1:49080/1‑93 (MQ=255)
gggTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGAtt < 1:287022/93‑1 (MQ=255)
gTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGAtttt > 2:1329888/1‑93 (MQ=255)
tAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGAttttt > 1:4121829/1‑93 (MQ=255)
tAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGAttttt > 1:4633502/1‑93 (MQ=255)
aTTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTta < 1:5964706/93‑1 (MQ=255)
cGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGt < 2:5251567/93‑1 (MQ=255)
cccACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAAc > 2:871199/1‑93 (MQ=255)
ccACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACt > 1:3527810/1‑93 (MQ=255)
ccACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACt > 1:6748659/1‑93 (MQ=255)
cacaGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTc > 1:3357070/1‑93 (MQ=255)
aGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCAct < 2:7484568/93‑1 (MQ=255)
gCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtct > 1:1469074/1‑93 (MQ=255)
gCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtct < 1:3775422/93‑1 (MQ=255)
cTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtctt > 2:5856609/1‑93 (MQ=255)
cTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtctt < 2:1531337/93‑1 (MQ=255)
tGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtcttc > 1:4226677/1‑93 (MQ=255)
gATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtcttct > 1:7063186/1‑93 (MQ=255)
gATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtcttct > 2:6576252/1‑93 (MQ=255)
aTTTTGCAACAACTGGTGCGTCTCCTGGCGCTCCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtcttctt < 1:2365262/93‑1 (MQ=255)
aTTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtcttctt > 2:1629721/1‑93 (MQ=255)
aTTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtcttctt < 1:5755585/93‑1 (MQ=255)
tttGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCa < 1:2283060/93‑1 (MQ=255)
tGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACt < 1:4887945/93‑1 (MQ=255)
gCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTa < 1:7128346/93‑1 (MQ=255)
gCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTa > 1:6262835/1‑93 (MQ=255)
caacaaCTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTaa < 2:4428620/93‑1 (MQ=255)
aacaacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAg > 2:6838451/1‑93 (MQ=255)
aacaacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAg < 2:7010024/93‑1 (MQ=255)
acaacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGa < 2:1252837/93‑1 (MQ=255)
caacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGaa < 2:5837026/93‑1 (MQ=255)
aacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAat < 1:1193851/93‑1 (MQ=255)
aacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAat > 2:4984668/1‑93 (MQ=255)
acTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAata < 2:5704078/93‑1 (MQ=255)
acTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAata < 1:523685/93‑1 (MQ=255)
acTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAata > 1:1024966/1‑93 (MQ=255)
acTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAata > 2:560979/1‑93 (MQ=255)
cTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAatat < 1:1835438/93‑1 (MQ=255)
tGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATc > 2:3248175/1‑93 (MQ=255)
tGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATc < 2:7339969/93‑1 (MQ=255)
ggTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATcc < 1:550495/93‑1 (MQ=255)
ggTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATcc < 2:4695072/93‑1 (MQ=255)
gTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCa < 2:1760830/93‑1 (MQ=255)
gTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCa < 1:6140435/93‑1 (MQ=255)
tGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCAt < 1:1925733/93‑1 (MQ=255)
gCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCAtt < 1:4463301/93‑1 (MQ=255)
cGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCAttg < 2:3510837/93‑2 (MQ=255)
cGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTa < 1:5904938/93‑1 (MQ=255)
tctcCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAtc > 2:3499400/1‑93 (MQ=255)
tctcCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAtc < 2:2599576/93‑1 (MQ=255)
tctcCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAtc < 1:1273240/93‑1 (MQ=255)
tctcCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAtc < 1:5722698/93‑1 (MQ=255)
tctcCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAtc < 1:6266784/93‑1 (MQ=255)
tctcCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAtc < 2:3420862/93‑1 (MQ=255)
ctcCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAtct > 2:3607986/1‑93 (MQ=255)
tcCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAtctc < 1:1744222/93‑1 (MQ=255)
cTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCaa < 2:3025715/93‑1 (MQ=255)
tGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAAt < 1:2766243/93‑1 (MQ=255)
tGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAAt < 2:4472093/93‑1 (MQ=255)
ggCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATg < 2:223654/93‑1 (MQ=255)
gcgcACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGc < 1:4956786/93‑1 (MQ=255)
gcgcACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGc > 1:1630438/1‑93 (MQ=255)
gcgcACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGc < 2:6671263/93‑1 (MQ=255)
gcACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCt < 2:1044773/93‑1 (MQ=255)
aCCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTa > 2:6177757/1‑93 (MQ=255)
ccTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCttnn > 2:419883/1‑91 (MQ=255)
ttttATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCagag < 1:1000860/93‑1 (MQ=255)
ttttATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCagag < 1:1587407/93‑1 (MQ=255)
ttATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGAt < 1:7237007/93‑1 (MQ=255)
tATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGAtt < 1:3919510/93‑1 (MQ=255)
tGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCt > 2:3642675/1‑93 (MQ=255)
tGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCt > 2:4603557/1‑93 (MQ=255)
tGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCt < 1:2468719/93‑1 (MQ=255)
gCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCtt < 1:2570471/93‑1 (MQ=255)
gCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCtt > 1:847514/1‑93 (MQ=255)
cttccctcCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCttt < 1:4780930/93‑1 (MQ=255)
ttccttccTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCtttt < 2:3271291/93‑1 (MQ=255)
tccctcctGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTc < 2:6381021/93‑1 (MQ=255)
tccctcctGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTc > 2:7190700/1‑93 (MQ=255)
cttcctGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCt > 2:4130430/1‑93 (MQ=255)
|
AGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCT > NC_000913/4248030‑4248212
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTT > NC_000913/4248030‑4248214
|
AGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTC > SRR4302542.2050906/1‑94 (MQ=60)
GCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCC < SRR4302542.6731453/94‑1 (MQ=60)
AGTGTAAAAGGTAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTG < SRR4302542.1890312/94‑1 (MQ=60)
GTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGG > SRR4302542.966940/1‑94 (MQ=60)
GTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGG > SRR4302542.33100/1‑94 (MQ=60)
GTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGG > SRR4302542.3074636/1‑94 (MQ=60)
GTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGG > SRR4302542.7521055/1‑94 (MQ=60)
GTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGG < SRR4302542.4480577/94‑1 (MQ=60)
TAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGAT < SRR4302542.1474958/94‑1 (MQ=60)
AAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATAT < SRR4302542.951339/94‑1 (MQ=60)
AAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATG > SRR4302542.4426309/1‑94 (MQ=60)
AGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGA > SRR4302542.1082068/1‑94 (MQ=60)
GGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAG < SRR4302542.4389138/94‑1 (MQ=60)
GGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAG < SRR4302542.1914774/94‑1 (MQ=60)
GCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGC < SRR4302542.1135922/94‑1 (MQ=60)
CAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCG < SRR4302542.205867/94‑1 (MQ=60)
AAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGA > SRR4302542.5766223/1‑94 (MQ=60)
AAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGA < SRR4302542.4961862/94‑1 (MQ=60)
AGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGAT > SRR4302542.49483/1‑94 (MQ=60)
AGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGAT < SRR4302542.1723872/94‑1 (MQ=60)
GGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTT < SRR4302542.289531/94‑1 (MQ=60)
GGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTT > SRR4302542.6310949/1‑94 (MQ=60)
GGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTT > SRR4302542.2243363/1‑94 (MQ=60)
GGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTT < SRR4302542.4160243/94‑1 (MQ=60)
GTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTT > SRR4302542.4678783/1‑94 (MQ=60)
GTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTT > SRR4302542.5798316/1‑94 (MQ=60)
GTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTT > SRR4302542.4162440/1‑94 (MQ=60)
TAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTT < SRR4302542.2558332/94‑1 (MQ=60)
TAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTT > SRR4302542.2865446/1‑94 (MQ=60)
TAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTT < SRR4302542.2643840/94‑1 (MQ=60)
ATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTAT < SRR4302542.175399/94‑1 (MQ=60)
ATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTAT > SRR4302542.1464079/1‑94 (MQ=60)
ATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTAT < SRR4302542.6022451/94‑1 (MQ=60)
ATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTAT < SRR4302542.1603957/94‑1 (MQ=60)
TACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAG < SRR4302542.2361035/94‑1 (MQ=60)
TACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAG > SRR4302542.4741993/1‑94 (MQ=60)
GCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAA < SRR4302542.4951294/94‑1 (MQ=60)
CCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAAC > SRR4302542.5954513/1‑94 (MQ=60)
CCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAAC > SRR4302542.194634/1‑94 (MQ=60)
CCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACT > SRR4302542.3560782/1‑94 (MQ=60)
CCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACT > SRR4302542.3331855/1‑94 (MQ=60)
CCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACT > SRR4302542.6815066/1‑94 (MQ=60)
CCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTC > SRR4302542.4220669/1‑94 (MQ=60)
CCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTC > SRR4302542.3388637/1‑94 (MQ=60)
CCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTC > SRR4302542.3388638/1‑94 (MQ=60)
CACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCA < SRR4302542.4725539/94‑1 (MQ=60)
ACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCAC > SRR4302542.7602839/1‑94 (MQ=60)
AGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTT < SRR4302542.7271515/94‑1 (MQ=60)
AGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTT < SRR4302542.753858/94‑1 (MQ=60)
GTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTC < SRR4302542.3608976/94‑1 (MQ=60)
GTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCCCTTC > SRR4302542.2425683/1‑94 (MQ=60)
GTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTATTATAGTAACTCACTTC > SRR4302542.3393980/1‑94 (MQ=60)
TGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCT > SRR4302542.1481756/1‑94 (MQ=60)
TGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCT > SRR4302542.6262826/1‑94 (MQ=60)
GCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTT > SRR4302542.5446731/1‑94 (MQ=60)
GCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTT > SRR4302542.6058964/1‑94 (MQ=60)
GCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTT < SRR4302542.3812768/94‑1 (MQ=60)
CTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTC > SRR4302542.4268317/1‑94 (MQ=60)
CTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTC < SRR4302542.6063711/94‑1 (MQ=60)
TGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCT > SRR4302542.7132508/1‑94 (MQ=60)
GATTTTGCAACAACTGGTGAGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTT > SRR4302542.917384/1‑94 (MQ=60)
ATTTTGCAACAACTGGTGCGTCTCCTGGCGCTCCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTC < SRR4302542.2385731/94‑1 (MQ=60)
ATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTC < SRR4302542.236648/94‑1 (MQ=60)
ATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTC < SRR4302542.5811452/94‑1 (MQ=60)
TTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCAC < SRR4302542.2302680/94‑1 (MQ=60)
TGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTA > SRR4302542.414603/1‑94 (MQ=60)
TGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTA < SRR4302542.4935496/94‑1 (MQ=60)
TGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTA > SRR4302542.6324548/1‑94 (MQ=60)
GCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAA < SRR4302542.7198305/94‑1 (MQ=60)
AACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATA < SRR4302542.1204131/94‑1 (MQ=60)
AACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATA > SRR4302542.1033797/1‑94 (MQ=60)
ACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATAT < SRR4302542.7394519/94‑1 (MQ=60)
ACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATAT < SRR4302542.528213/94‑1 (MQ=60)
ACTGGTGCGTCTCCTGGAGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATAT > SRR4302542.6895976/1‑94 (MQ=60)
CTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATC < SRR4302542.1851332/94‑1 (MQ=60)
GGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCA < SRR4302542.555248/94‑1 (MQ=60)
GTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCAT < SRR4302542.6199849/94‑1 (MQ=60)
TGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATT < SRR4302542.2163605/94‑1 (MQ=60)
TGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATT < SRR4302542.1942365/94‑1 (MQ=60)
GCGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTA < SRR4302542.4507083/94‑1 (MQ=60)
CGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAT < SRR4302542.5962168/94‑1 (MQ=60)
CGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAT < SRR4302542.5660901/94‑1 (MQ=60)
CGTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAT < SRR4302542.4966543/94‑1 (MQ=60)
GTCTCCTGGCGCACCTTTTTTTTTGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATC > SRR4302542.1558800/1‑94 (MQ=60)
GTCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATC > SRR4302542.5141093/1‑94 (MQ=60)
TCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCT < SRR4302542.1284177/94‑1 (MQ=60)
TCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCT > SRR4302542.1831828/1‑94 (MQ=60)
TCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCT < SRR4302542.5778244/94‑1 (MQ=60)
TCTCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCT < SRR4302542.6328546/94‑1 (MQ=60)
CTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTC < SRR4302542.7103212/94‑1 (MQ=60)
TCCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCA < SRR4302542.1759355/94‑1 (MQ=60)
CCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAA > SRR4302542.5987111/1‑94 (MQ=60)
CCTGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAA > SRR4302542.1600531/1‑94 (MQ=60)
TGGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATG < SRR4302542.2792896/94‑1 (MQ=60)
GGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGC < SRR4302542.3043571/94‑1 (MQ=60)
GGCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGC > SRR4302542.1644504/1‑94 (MQ=60)
GCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCC > SRR4302542.3821825/1‑94 (MQ=60)
GCGCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCC < SRR4302542.5004941/94‑1 (MQ=60)
GCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTACCTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTT > SRR4302542.4291800/1‑94 (MQ=60)
GCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTT < SRR4302542.2005836/94‑1 (MQ=60)
GCACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTT < SRR4302542.6326546/94‑1 (MQ=60)
CACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTA < SRR4302542.4269684/94‑1 (MQ=60)
CACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTA > SRR4302542.5524369/1‑94 (MQ=60)
ACCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTAT > SRR4302542.4850346/1‑94 (MQ=60)
CCTTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATC > SRR4302542.2058872/1‑94 (MQ=60)
TTTTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAG < SRR4302542.728156/94‑1 (MQ=60)
TTTTTATGCTTCCCTCCTGGTATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAG < SRR4302542.2802280/94‑1 (MQ=60)
TTTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAG < SRR4302542.4950468/94‑1 (MQ=60)
TTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGA < SRR4302542.1009472/94‑1 (MQ=60)
TTTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGA < SRR4302542.1601108/94‑1 (MQ=60)
TTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGAT > SRR4302542.5937755/1‑94 (MQ=60)
TTTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGAT < SRR4302542.3575852/94‑1 (MQ=60)
TTTATGCTTCCCTCCTGGGATATGAGCCATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGAT < SRR4302542.1025444/94‑1 (MQ=60)
TTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATT < SRR4302542.7307996/94‑1 (MQ=60)
TTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATT > SRR4302542.1225086/1‑94 (MQ=60)
TTATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATT < SRR4302542.2526390/94‑1 (MQ=60)
TATGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTC < SRR4302542.3958188/94‑1 (MQ=60)
TGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTT < SRR4302542.2492682/94‑1 (MQ=60)
TGCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTT > SRR4302542.854820/1‑94 (MQ=60)
GCTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTT < SRR4302542.2595377/94‑1 (MQ=60)
CTTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTT < SRR4302542.4827530/94‑1 (MQ=60)
TTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTC > SRR4302542.7189305/1‑94 (MQ=60)
TTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTC < SRR4302542.4589941/94‑1 (MQ=60)
TTCCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTC < SRR4302542.651725/94‑1 (MQ=60)
CCCTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCT < SRR4302542.5973794/94‑1 (MQ=60)
CTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTT < SRR4302542.5538152/94‑1 (MQ=60)
|
AGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTT > NC_000913/4248030‑4248214
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
