Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,311,496	+C	coding (301/408 nt)	phnQ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,311,495	1	.	C	99.1%	1071.2 / ‑0.4	315	coding (302/408 nt)	phnQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/3); new base C (163/149); total (163/152)
Fisher's exact test for biased strand distribution p-value = 1.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 342 total aligned reads displayed.

GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG  >  NC_000913/4311403‑4311582

gAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCa                                                                                          >  2:1676265/1‑93 (MQ=255)

gAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCa                                                                                          <  1:3589798/93‑1 (MQ=255)

gAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCa                                                                                          <  2:5791247/93‑1 (MQ=255)

 aGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑c                                                                                        <  1:809150/93‑1 (MQ=255)

 aGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑c                                                                                        >  2:3438400/1‑93 (MQ=255)

  gTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑cc                                                                                       >  1:4937081/1‑92 (MQ=255)

  gTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑cc                                                                                       <  2:4818024/93‑2 (MQ=255)

     aTGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑ccgtt                                                                                    >  2:5123363/1‑89 (MQ=255)

       gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTcc                                                                                   <  1:4596214/93‑1 (MQ=255)

       gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTcc                                                                                   <  1:1756036/93‑1 (MQ=255)

       gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTcc                                                                                   >  1:2169795/1‑93 (MQ=255)

           aaTGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGcc                                                                               <  2:4579483/93‑1 (MQ=255)

            aTGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGccc                                                                              <  2:7112762/93‑1 (MQ=255)

             tgtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCa                                                                             >  2:839907/1‑93 (MQ=255)

              gtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAg                                                                            <  2:7325233/93‑1 (MQ=255)

               tgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAgg                                                                           <  2:1435872/93‑1 (MQ=255)

                ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGc                                                                          <  1:2999086/93‑1 (MQ=255)

                ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGc                                                                          <  2:2523278/93‑1 (MQ=255)

                ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGc                                                                          <  2:1899265/93‑1 (MQ=255)

                     gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGata                                                                     >  1:5896181/1‑93 (MQ=255)

                         ttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGAtattat                                                                 >  1:4071344/1‑93 (MQ=255)

                          tCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATc                                                                <  2:610401/93‑1 (MQ=255)

                          tCTTTTTGAGGTTGGCTAATGAAACGCTTCCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATc                                                                <  2:3200876/93‑1 (MQ=255)

                           cTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcg                                                               <  2:328180/93‑1 (MQ=255)

                            tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcga                                                              >  1:3716406/1‑93 (MQ=255)

                            tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcga                                                              <  2:4430648/93‑1 (MQ=255)

                            tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcga                                                              <  2:7410780/93‑1 (MQ=255)

                             ttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATcgac                                                             <  2:5441096/93‑1 (MQ=255)

                                tGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCgacgac                                                          <  2:6346643/93‑1 (MQ=255)

                                 gAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGaca                                                         >  1:3143526/1‑93 (MQ=255)

                                   ggTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACAcc                                                       <  2:5852087/93‑1 (MQ=255)

                                   ggTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACAcc                                                       <  1:3417483/93‑1 (MQ=255)

                                    gTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCa                                                      >  1:5307633/1‑93 (MQ=255)

                                    gTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCa                                                      <  1:5750204/93‑1 (MQ=255)

                                     ttGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAt                                                     >  1:2719638/1‑93 (MQ=255)

                                      tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAtt                                                    >  1:665508/1‑93 (MQ=255)

                                      tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAtt                                                    >  1:3818967/1‑93 (MQ=255)

                                       ggCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTg                                                   <  1:1418568/93‑1 (MQ=255)

                                         cTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGc                                                 >  2:5923797/1‑93 (MQ=255)

                                          tAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCa                                                >  1:5640523/1‑93 (MQ=255)

                                           aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa                                               <  2:388788/93‑1 (MQ=255)

                                            aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat                                              >  1:3303530/1‑93 (MQ=255)

                                             tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata                                             >  2:3801888/1‑93 (MQ=255)

                                             tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata                                             >  1:4821807/1‑93 (MQ=255)

                                             tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata                                             <  1:642120/93‑1 (MQ=255)

                                             tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata                                             >  2:2237612/1‑93 (MQ=255)

                                             tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata                                             >  1:2304448/1‑93 (MQ=255)

                                               aaaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAtt                                           <  1:2532117/93‑1 (MQ=255)

                                                aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc                                          >  2:2596659/1‑93 (MQ=255)

                                                aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc                                          >  1:7473514/1‑93 (MQ=255)

                                                aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc                                          <  1:5438392/93‑1 (MQ=255)

                                                  cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag                                        <  1:72740/93‑1 (MQ=255)

                                                  cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag                                        >  1:7119937/1‑93 (MQ=255)

                                                  cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag                                        <  1:6722713/93‑1 (MQ=255)

                                                   gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc                                       <  2:7060048/93‑1 (MQ=255)

                                                   gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc                                       <  1:7379772/93‑1 (MQ=255)

                                                    cTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagca                                      <  2:4282662/93‑1 (MQ=255)

                                                      ttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAgg                                    <  1:5025374/93‑1 (MQ=255)

                                                      ttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAgg                                    >  1:6205208/1‑93 (MQ=255)

                                                        ccGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCg                                  >  2:1026767/1‑93 (MQ=255)

                                                         cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGcta                                 >  2:5044454/1‑91 (MQ=255)

                                                         cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa                                 >  1:1039874/1‑93 (MQ=255)

                                                          gCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt                                >  2:1343606/1‑93 (MQ=255)

                                                          gCTATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt                                >  1:1349709/1‑93 (MQ=255)

                                                            tATTTCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTa                              >  1:4195026/1‑93 (MQ=255)

                                                              tttCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAt                            <  1:6321733/93‑1 (MQ=255)

                                                                tCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa                          <  2:923004/93‑1 (MQ=255)

                                                                tCTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa                          <  2:6692152/93‑1 (MQ=255)

                                                                 cTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAc                         <  1:2260965/93‑1 (MQ=255)

                                                                 cTTTTATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAc                         >  2:221455/1‑93 (MQ=255)

                                                                    ttATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCt                      >  1:1890087/1‑93 (MQ=255)

                                                                     tATTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCtt                     >  1:33692/1‑93 (MQ=255)

                                                                      aTTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTta                    <  2:6483155/93‑1 (MQ=255)

                                                                      aTTCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTta                    >  2:4676223/1‑93 (MQ=255)

                                                                       ttCACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtat                   >  2:6772459/1‑93 (MQ=255)

                                                                        tCACCCTGCTCACGCTGTCCACCGTTCCGGCCCGGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtata                  >  2:3053719/1‑93 (MQ=255)

                                                                         cACCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATaa                 >  1:6472075/1‑93 (MQ=255)

                                                                          aCCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc                >  2:5243319/1‑93 (MQ=255)

                                                                          aCCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc                >  1:1250401/1‑93 (MQ=255)

                                                                          aCCCTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc                <  1:1638114/93‑1 (MQ=255)

                                                                           cccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc               >  1:6983966/1‑93 (MQ=255)

                                                                           cccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc               >  2:5569257/1‑93 (MQ=255)

                                                                           cccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc               >  2:5615302/1‑93 (MQ=255)

                                                                            ccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAccc              <  1:7342259/93‑1 (MQ=255)

                                                                            ccTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAccc              >  1:5407201/1‑93 (MQ=255)

                                                                             cTGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt             >  2:701645/1‑93 (MQ=255)

                                                                              tGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTg            >  2:3586030/1‑93 (MQ=255)

                                                                              tGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTg            >  1:1993537/1‑93 (MQ=255)

                                                                              tGCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTg            <  1:2798891/93‑1 (MQ=255)

                                                                               gCTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGa           <  1:4293671/93‑1 (MQ=255)

                                                                                cTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc          <  2:1805809/93‑1 (MQ=255)

                                                                                 tCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAcc         <  1:350490/93‑1 (MQ=255)

                                                                                    cGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg      <  2:1481883/93‑1 (MQ=255)

                                                                                    cGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg      <  2:5531935/93‑1 (MQ=255)

                                                                                    cGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg      <  2:4974494/93‑1 (MQ=255)

                                                                                     gCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTgg     <  1:925882/93‑1 (MQ=255)

                                                                                      cTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTggg    >  2:1060044/1‑93 (MQ=255)

                                                                                       tGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGc   >  2:2803033/1‑93 (MQ=255)

                                                                                       tGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGc   >  2:1564172/1‑93 (MQ=255)

                                                                                       tGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGc   >  1:1165241/1‑93 (MQ=255)

GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG  >  NC_000913/4311403‑4311582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT  >  NC_000913/4311403‑4311589

GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑C                                                                                               >  SRR4302542.3980034/1‑94 (MQ=60)

GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑C                                                                                               <  SRR4302542.3623275/94‑1 (MQ=60)

 AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC                                                                                              >  SRR4302542.3351367/1‑94 (MQ=60)

 AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC                                                                                              <  SRR4302542.816116/94‑1 (MQ=60)

 AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC                                                                                              >  SRR4302542.4985070/1‑94 (MQ=60)

 AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CC                                                                                              >  SRR4302542.1258770/1‑94 (MQ=60)

  GTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑Ccg                                                                                             >  SRR4302542.4106054/1‑92 (MQ=60)

   TAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑Ccgt                                                                                            >  SRR4302542.3584559/1‑91 (MQ=60)

    AATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT                                                                                            >  SRR4302542.4383834/1‑94 (MQ=60)

    AATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTT                                                                                            >  SRR4302542.2637791/1‑94 (MQ=60)

     ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTC                                                                                           >  SRR4302542.3874420/1‑94 (MQ=60)

     ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTC                                                                                           >  SRR4302542.95689/1‑94 (MQ=60)

      TGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCC                                                                                          <  SRR4302542.3787748/94‑1 (MQ=60)

      TGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCC                                                                                          >  SRR4302542.2188477/1‑94 (MQ=60)

       GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCG                                                                                         <  SRR4302542.4641155/94‑1 (MQ=60)

       GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCG                                                                                         <  SRR4302542.5358515/94‑1 (MQ=60)

       GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCG                                                                                         <  SRR4302542.1771275/94‑1 (MQ=60)

        ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGG                                                                                        <  SRR4302542.3745863/94‑1 (MQ=60)

        ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGG                                                                                        <  SRR4302542.7181809/94‑1 (MQ=60)

              GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCCTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGG                                                                                  <  SRR4302542.2540010/94‑1 (MQ=60)

               TGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGC                                                                                 >  SRR4302542.3782788/1‑94 (MQ=60)

                GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCC                                                                                >  SRR4302542.2963917/1‑94 (MQ=60)

                GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCC                                                                                <  SRR4302542.3027775/94‑1 (MQ=60)

                GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCC                                                                                <  SRR4302542.694346/94‑1 (MQ=60)

                GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCC                                                                                <  SRR4302542.1497646/94‑1 (MQ=60)

                  ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGA                                                                              >  SRR4302542.6841921/1‑94 (MQ=60)

                   TAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGAT                                                                             <  SRR4302542.3356964/94‑1 (MQ=60)

                    AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATA                                                                            <  SRR4302542.3642194/94‑1 (MQ=60)

                    AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATA                                                                            >  SRR4302542.5953321/1‑94 (MQ=60)

                     GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATAT                                                                           <  SRR4302542.4998737/94‑1 (MQ=60)

                     GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATAT                                                                           >  SRR4302542.2296296/1‑94 (MQ=60)

                       GTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTA                                                                         >  SRR4302542.6402218/1‑94 (MQ=60)

                        TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTAT                                                                        >  SRR4302542.4111489/1‑94 (MQ=60)

                         TTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATC                                                                       >  SRR4302542.4319071/1‑94 (MQ=60)

                          TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCG                                                                      <  SRR4302542.5529052/94‑1 (MQ=60)

                          TCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCG                                                                      >  SRR4302542.1274857/1‑94 (MQ=60)

                           CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGA                                                                     >  SRR4302542.3753168/1‑94 (MQ=60)

                            TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGAC                                                                    >  SRR4302542.22320/1‑94 (MQ=60)

                              TTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGA                                                                  >  SRR4302542.4982939/1‑94 (MQ=60)

                              TTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGA                                                                  <  SRR4302542.4677676/94‑1 (MQ=60)

                                TGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACA                                                                <  SRR4302542.6216697/94‑1 (MQ=60)

                                TGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACA                                                                >  SRR4302542.3173394/1‑94 (MQ=60)

                                TGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACA                                                                >  SRR4302542.3173393/1‑94 (MQ=60)

                                 GAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACAC                                                               >  SRR4302542.1983255/1‑94 (MQ=60)

                                 GAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACAC                                                               >  SRR4302542.2785996/1‑94 (MQ=60)

                                  AGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACC                                                              >  SRR4302542.41907/1‑94 (MQ=60)

                                  AGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACC                                                              >  SRR4302542.4909721/1‑94 (MQ=60)

                                   GGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCA                                                             <  SRR4302542.3449503/94‑1 (MQ=60)

                                   GGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCA                                                             >  SRR4302542.5359198/1‑94 (MQ=60)

                                    GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAT                                                            <  SRR4302542.6602225/94‑1 (MQ=60)

                                    GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAT                                                            <  SRR4302542.1500852/94‑1 (MQ=60)

                                    GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAT                                                            >  SRR4302542.2745861/1‑94 (MQ=60)

                                    GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAT                                                            <  SRR4302542.5806021/94‑1 (MQ=60)

                                     TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT                                                           >  SRR4302542.3856740/1‑94 (MQ=60)

                                     TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT                                                           >  SRR4302542.5400723/1‑94 (MQ=60)

                                     TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT                                                           <  SRR4302542.2484372/94‑1 (MQ=60)

                                     TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT                                                           <  SRR4302542.7586114/94‑1 (MQ=60)

                                     TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT                                                           >  SRR4302542.671250/1‑94 (MQ=60)

                                       GGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGG                                                         <  SRR4302542.1430851/94‑1 (MQ=60)

                                       GGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGG                                                         <  SRR4302542.3527760/94‑1 (MQ=60)

                                       GGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGG                                                         <  SRR4302542.3003119/94‑1 (MQ=60)

                                        GCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGC                                                        <  SRR4302542.2659858/94‑1 (MQ=60)

                                        GCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGC                                                        <  SRR4302542.883415/94‑1 (MQ=60)

                                         CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCA                                                       >  SRR4302542.5695297/1‑94 (MQ=60)

                                           AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCCC‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT                                                     <  SRR4302542.3205099/94‑1 (MQ=60)

                                           AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT                                                     <  SRR4302542.906095/94‑1 (MQ=60)

                                           AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT                                                     <  SRR4302542.1349906/94‑1 (MQ=60)

                                           AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT                                                     >  SRR4302542.3334687/1‑94 (MQ=60)

                                            ATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCATGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATA                                                    >  SRR4302542.6289195/1‑94 (MQ=60)

                                            ATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATA                                                    >  SRR4302542.2324243/1‑94 (MQ=60)

                                            ATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATA                                                    >  SRR4302542.3427630/1‑94 (MQ=60)

                                            ATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATA                                                    >  SRR4302542.4868805/1‑94 (MQ=60)

                                             TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT                                                   >  SRR4302542.7108068/1‑94 (MQ=60)

                                             TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT                                                   <  SRR4302542.6535398/94‑1 (MQ=60)

                                             TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT                                                   <  SRR4302542.647639/94‑1 (MQ=60)

                                             TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT                                                   <  SRR4302542.4144608/94‑1 (MQ=60)

                                             TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT                                                   <  SRR4302542.4381545/94‑1 (MQ=60)

                                             TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT                                                   <  SRR4302542.7434490/94‑1 (MQ=60)

                                             TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT                                                   >  SRR4302542.561062/1‑94 (MQ=60)

                                              GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT                                                  <  SRR4302542.5778837/94‑1 (MQ=60)

                                              GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT                                                  <  SRR4302542.1982906/94‑1 (MQ=60)

                                              GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCGCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT                                                  <  SRR4302542.5778836/94‑1 (MQ=60)

                                               AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC                                                 <  SRR4302542.132065/94‑1 (MQ=60)

                                               AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC                                                 <  SRR4302542.2556679/94‑1 (MQ=60)

                                               AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC                                                 >  SRR4302542.7546746/1‑94 (MQ=60)

                                                AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA                                                <  SRR4302542.1695515/94‑1 (MQ=60)

                                                AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA                                                >  SRR4302542.7500557/1‑94 (MQ=60)

                                                AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA                                                <  SRR4302542.5491232/94‑1 (MQ=60)

                                                 ACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAG                                               >  SRR4302542.7189821/1‑94 (MQ=60)

                                                 ACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAG                                               <  SRR4302542.5485909/94‑1 (MQ=60)

                                                  CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC                                              >  SRR4302542.686200/1‑94 (MQ=60)

                                                  CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC                                              <  SRR4302542.6788909/94‑1 (MQ=60)

                                                  CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC                                              <  SRR4302542.73342/94‑1 (MQ=60)

                                                   GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA                                             <  SRR4302542.7452028/94‑1 (MQ=60)

                                                    CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG                                            <  SRR4302542.3974627/94‑1 (MQ=60)

                                                    CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG                                            <  SRR4302542.3824655/94‑1 (MQ=60)

                                                    CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG                                            >  SRR4302542.1235559/1‑94 (MQ=60)

                                                    CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG                                            <  SRR4302542.5448671/94‑1 (MQ=60)

                                                    CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG                                            <  SRR4302542.5113852/94‑1 (MQ=60)

                                                     TTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGG                                           >  SRR4302542.4369972/1‑94 (MQ=60)

                                                     TTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGG                                           >  SRR4302542.6266151/1‑94 (MQ=60)

                                                      TTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGC                                          >  SRR4302542.3419046/1‑94 (MQ=60)

                                                      TTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGC                                          <  SRR4302542.1369469/94‑1 (MQ=60)

                                                      TTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGC                                          <  SRR4302542.5074155/94‑1 (MQ=60)

                                                       TCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCG                                         >  SRR4302542.1738219/1‑94 (MQ=60)

                                                        CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA                                        <  SRR4302542.6390863/94‑1 (MQ=60)

                                                        CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA                                        >  SRR4302542.1468098/1‑94 (MQ=60)

                                                        CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA                                        >  SRR4302542.5467914/1‑94 (MQ=60)

                                                        CCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA                                        >  SRR4302542.1048805/1‑94 (MQ=60)

                                                        CCGCTATTTATTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA                                        >  SRR4302542.4319696/1‑94 (MQ=60)

                                                         CGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCCC‑CGTTCCGGCCCAGGCCGATATTATCGACGACCCCATTGGCAATATTCAGCAGGCGAT                                       <  SRR4302542.6612956/94‑1 (MQ=60)

                                                         CGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAT                                       >  SRR4302542.1361365/1‑94 (MQ=60)

                                                          GCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT                                      >  SRR4302542.3532529/1‑94 (MQ=60)

                                                           CTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA                                     >  SRR4302542.3289718/1‑94 (MQ=60)

                                                           CTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA                                     >  SRR4302542.4236385/1‑94 (MQ=60)

                                                            TATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA                                    >  SRR4302542.7404785/1‑94 (MQ=60)

                                                            TATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA                                    >  SRR4302542.1819708/1‑94 (MQ=60)

                                                             ATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAT                                   <  SRR4302542.6444631/94‑1 (MQ=60)

                                                             ATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAT                                   >  SRR4302542.754288/1‑94 (MQ=60)

                                                              TTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATG                                  <  SRR4302542.6384041/94‑1 (MQ=60)

                                                               TTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGA                                 >  SRR4302542.3509891/1‑94 (MQ=60)

                                                               TTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGA                                 <  SRR4302542.2338650/94‑1 (MQ=60)

                                                                TCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC                                >  SRR4302542.2048720/1‑94 (MQ=60)

                                                                TCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC                                <  SRR4302542.2310662/94‑1 (MQ=60)

                                                                TCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC                                <  SRR4302542.961083/94‑1 (MQ=60)

                                                                 CTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACG                               >  SRR4302542.2760244/1‑94 (MQ=60)

                                                                 CTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACG                               >  SRR4302542.5843762/1‑94 (MQ=60)

                                                                 CTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACG                               <  SRR4302542.2280404/94‑1 (MQ=60)

                                                                 CTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACG                               <  SRR4302542.4899460/94‑1 (MQ=60)

                                                                  TTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGC                              >  SRR4302542.7527252/1‑94 (MQ=60)

                                                                   TTTATTCCCCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT                             <  SRR4302542.3102521/94‑1 (MQ=60)

                                                                   TTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT                             >  SRR4302542.1906443/1‑94 (MQ=60)

                                                                    TTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT                            >  SRR4302542.33992/1‑94 (MQ=60)

                                                                     TATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTA                           >  SRR4302542.2918800/1‑94 (MQ=60)

                                                                      ATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT                          <  SRR4302542.7290441/94‑1 (MQ=60)

                                                                      ATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT                          <  SRR4302542.5014909/94‑1 (MQ=60)

                                                                       TTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA                         <  SRR4302542.2217932/94‑1 (MQ=60)

                                                                        TCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA                        >  SRR4302542.6535839/1‑94 (MQ=60)

                                                                         CACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC                       >  SRR4302542.1966152/1‑94 (MQ=60)

                                                                         CACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC                       >  SRR4302542.1261153/1‑94 (MQ=60)

                                                                          ACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC                      >  SRR4302542.7052560/1‑94 (MQ=60)

                                                                          ACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC                      <  SRR4302542.1652273/94‑1 (MQ=60)

                                                                          ACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC                      >  SRR4302542.943913/1‑94 (MQ=60)

                                                                          ACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC                      <  SRR4302542.6650357/94‑1 (MQ=60)

                                                                           CCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCC                     >  SRR4302542.357678/1‑94 (MQ=60)

                                                                           CCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCC                     >  SRR4302542.3208715/1‑94 (MQ=60)

                                                                           CCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCC                     <  SRR4302542.556247/94‑1 (MQ=60)

                                                                           CCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCC                     >  SRR4302542.5459726/1‑94 (MQ=60)

                                                                            CCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT                    >  SRR4302542.6513048/1‑94 (MQ=60)

                                                                            CCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT                    >  SRR4302542.7382475/1‑94 (MQ=60)

                                                                            CCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT                    <  SRR4302542.7414176/94‑1 (MQ=60)

                                                                             CTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG                   >  SRR4302542.2010740/1‑94 (MQ=60)

                                                                             CTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTG                   <  SRR4302542.4665306/94‑1 (MQ=60)

                                                                              TGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGA                  <  SRR4302542.2825819/94‑1 (MQ=60)

                                                                               GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC                 <  SRR4302542.4335903/94‑1 (MQ=60)

                                                                               GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC                 <  SRR4302542.6784109/94‑1 (MQ=60)

                                                                               GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC                 <  SRR4302542.6085813/94‑1 (MQ=60)

                                                                               GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC                 >  SRR4302542.3664899/1‑94 (MQ=60)

                                                                               GCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGACATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAC                 <  SRR4302542.1145247/94‑1 (MQ=60)

                                                                                CTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC                >  SRR4302542.7227122/1‑94 (MQ=60)

                                                                                CTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC                >  SRR4302542.2117698/1‑94 (MQ=60)

                                                                                CTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC                <  SRR4302542.5111609/94‑1 (MQ=60)

                                                                                 TCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG               <  SRR4302542.353527/94‑1 (MQ=60)

                                                                                  CACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGT              >  SRR4302542.6363511/1‑94 (MQ=60)

                                                                                    CGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG            >  SRR4302542.1112617/1‑94 (MQ=60)

                                                                                    CGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG            <  SRR4302542.2219360/94‑1 (MQ=60)

                                                                                    CGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG            >  SRR4302542.583207/1‑94 (MQ=60)

                                                                                     GCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG           >  SRR4302542.6739395/1‑94 (MQ=60)

                                                                                     GCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG           <  SRR4302542.1838548/94‑1 (MQ=60)

                                                                                     GCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG           <  SRR4302542.933851/94‑1 (MQ=60)

                                                                                      CTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC          >  SRR4302542.747539/1‑94 (MQ=60)

                                                                                      CTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC          <  SRR4302542.7396961/94‑1 (MQ=60)

                                                                                      CTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC          >  SRR4302542.7440077/1‑94 (MQ=60)

                                                                                      CTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC          >  SRR4302542.1375373/1‑94 (MQ=60)

                                                                                      CTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC          >  SRR4302542.1175270/1‑94 (MQ=60)

                                                                                       TGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG         >  SRR4302542.86736/1‑94 (MQ=60)

                                                                                         T‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAG       <  SRR4302542.3426172/94‑1 (MQ=60)

                                                                                         T‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAG       <  SRR4302542.7228888/94‑1 (MQ=60)

                                                                                           CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGA      <  SRR4302542.3150880/94‑1 (MQ=60)

                                                                                            cacCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC     >  SRR4302542.588339/4‑94 (MQ=60)

                                                                                             acCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATATCCCTGACCGTGGGCGAGACT    >  SRR4302542.86232/3‑94 (MQ=60)

                                                                                               CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGGCCGTGGGCGAGACTAT  >  SRR4302542.948740/1‑94 (MQ=60)

                                                                                               CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT  >  SRR4302542.6798459/1‑94 (MQ=60)

                                                                                               CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT  >  SRR4302542.6825460/1‑94 (MQ=60)

GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT  >  NC_000913/4311403‑4311589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`