Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,312,334 |
A→G |
L116P (CTG→CCG) |
phnP ← |
PhnP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,312,334 | 0 | A | G | 80.8%
| 458.5
/ 118.7
| 234 | L116P (CTG→CCG) | phnP | PhnP |
| Reads supporting (aligned to +/- strand): ref base A (16/29); new base G (102/87); total (118/116) |
| Fisher's exact test for biased strand distribution p-value = 3.12e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01 |
Only 100 of 237 total aligned reads displayed.
AGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGGAAAC > NC_000913/4312244‑4312426
|
aGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCggg > 2:6707022/1‑93 (MQ=255)
gTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGc < 2:2437531/93‑1 (MQ=255)
gTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGc > 2:4785523/1‑93 (MQ=255)
ttttGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGcc < 2:5800393/93‑1 (MQ=255)
ttttGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCGGAAATCAAGCGGGcc > 1:3088207/1‑93 (MQ=255)
tttGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGccc < 1:6713280/93‑1 (MQ=255)
tttGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGccc < 2:4224778/93‑1 (MQ=255)
tttGAGTGGTTGAGCGGCAGGGGCCTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGccc > 2:1925227/1‑93 (MQ=255)
ttGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCg < 1:1703776/93‑1 (MQ=255)
ttGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCg > 2:2082768/1‑93 (MQ=255)
aGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGAt > 1:3565977/1‑93 (MQ=255)
aGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGAt < 1:506698/93‑1 (MQ=255)
aGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGAt > 2:4958789/1‑93 (MQ=255)
gTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATg > 1:3381837/1‑93 (MQ=255)
tGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGt < 2:30709/93‑1 (MQ=255)
tGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGt > 2:6878179/1‑93 (MQ=255)
gCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACa < 1:1981937/93‑1 (MQ=255)
gCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACa < 2:5447535/93‑1 (MQ=255)
gCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACa < 1:6372977/93‑1 (MQ=255)
ggCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGa < 2:5033915/93‑1 (MQ=255)
ggCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGa > 2:6325596/1‑93 (MQ=255)
ggCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGa < 2:1567669/93‑1 (MQ=255)
gCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGAt > 2:4915485/1‑93 (MQ=255)
gCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGAt < 1:2970788/93‑1 (MQ=255)
gCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGAt < 2:7210089/93‑1 (MQ=255)
cAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGAtc < 2:45854/93‑1 (MQ=255)
cAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGAtc < 1:4651676/93‑1 (MQ=255)
ggggCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGAtcgt < 2:4050480/93‑1 (MQ=255)
ggggCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGAtcgt > 1:1095922/1‑93 (MQ=255)
ggggCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGAtcgt < 1:421088/93‑1 (MQ=255)
ggggCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGAtcgt < 2:389783/93‑1 (MQ=255)
ggCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGAtcgtcg < 1:5785555/93‑1 (MQ=255)
tGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGc > 1:1188487/1‑93 (MQ=255)
aCCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGccc < 2:3470024/93‑1 (MQ=255)
aCCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGccc > 2:1751564/1‑93 (MQ=255)
aCCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGccc < 1:7388545/93‑1 (MQ=255)
tGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGt < 1:3160926/93‑1 (MQ=255)
tGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGt < 1:1469484/93‑1 (MQ=255)
gTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTggt > 1:2429547/1‑91 (MQ=255)
gTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGtt < 1:6258252/93‑1 (MQ=255)
tAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTc > 1:352883/1‑93 (MQ=255)
tAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTc < 2:4302896/93‑1 (MQ=255)
aCCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCAt > 1:6634662/1‑93 (MQ=255)
aCCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCAt > 1:5536014/1‑93 (MQ=255)
aCCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCAt < 1:2532486/93‑1 (MQ=255)
ccccTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATc > 1:1639118/1‑93 (MQ=255)
cccTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATcc > 2:4134611/1‑93 (MQ=255)
cccTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATcc > 1:4054896/1‑93 (MQ=255)
ccTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCcg > 2:6068176/1‑93 (MQ=255)
ccTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCcg > 2:3241547/1‑93 (MQ=255)
cTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCcgg > 2:3924278/1‑93 (MQ=255)
tGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCcggc > 2:3582746/1‑93 (MQ=255)
tGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCcggc > 2:2565585/1‑93 (MQ=255)
tGCAAATCAAACACCACAAACGGTTCCACCGTGCGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCcggc > 2:822376/1‑93 (MQ=255)
aaaTCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCggg > 2:3829592/1‑93 (MQ=255)
aaaTCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCggg > 2:4729582/1‑93 (MQ=255)
aaTCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGc > 2:6492041/1‑93 (MQ=255)
aaTCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGc < 1:5388428/93‑1 (MQ=255)
aaTCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGc > 2:7531134/1‑93 (MQ=255)
aTCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGcc > 1:2938951/1‑93 (MQ=255)
aTCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGcc > 1:956253/1‑93 (MQ=255)
aaCACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTaa > 1:6087964/1‑93 (MQ=255)
caccacAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAAc < 1:825573/93‑1 (MQ=255)
caccacAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAAc < 1:2807017/93‑1 (MQ=255)
accacAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAAcc > 1:3956767/1‑93 (MQ=255)
ccacAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCg < 1:5227280/93‑1 (MQ=255)
cacaAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCgg < 2:3734413/93‑1 (MQ=255)
caAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGgga < 2:2751970/93‑1 (MQ=255)
aaaCGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggat > 2:7375161/1‑93 (MQ=255)
aCGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggatcg < 2:329406/93‑1 (MQ=255)
aCGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggatcg > 1:1392182/1‑93 (MQ=255)
aCGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggatcg < 1:7305749/93‑1 (MQ=255)
cGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggatcgg < 1:1358833/93‑1 (MQ=255)
gTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggatcggat < 2:2938858/93‑1 (MQ=255)
gTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggatcggat > 1:6787571/1‑93 (MQ=255)
gTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggatcggat < 1:2083971/93‑1 (MQ=255)
ttCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGggatcggatc > 1:5817874/1‑93 (MQ=255)
tCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGgatcggatcg > 2:5584155/1‑93 (MQ=255)
tCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGgatcggatcg > 1:409368/1‑93 (MQ=255)
cACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGcc > 2:5064972/1‑93 (MQ=255)
aCCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCa > 2:53087/1‑93 (MQ=255)
tgtgGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGc > 1:4444734/1‑93 (MQ=255)
tgtgGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGc > 1:6577032/1‑93 (MQ=255)
gtgGCTGAAATCAAGCGGGCCCGGATGTTTAAACGGATCGTCGCACCCCTGTTCATCCGGCGGGCCGCAAACCGGGACCGGATCGCCCACAcc > 1:5343524/1‑93 (MQ=255)
gtgGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGcc > 2:2177424/1‑93 (MQ=255)
ggCTGAAATCAAGCGGGCCCGGATGTTTAACCAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGcccc < 2:1639094/93‑1 (MQ=255)
ggCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGcccc < 1:4721855/93‑1 (MQ=255)
ggCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGcccc < 1:1837101/93‑1 (MQ=255)
gCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCca > 2:3995412/1‑93 (MQ=255)
gCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCca > 1:7108888/1‑93 (MQ=255)
gCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCCACGCCCca > 1:3810687/1‑93 (MQ=255)
tGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagc > 1:6986594/1‑93 (MQ=255)
aaaTCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagcgc < 2:7101168/93‑1 (MQ=255)
aaTCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagcgca < 2:6587548/93‑1 (MQ=255)
aaTCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagcgca > 1:1005123/1‑93 (MQ=255)
aaTCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTCCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagcgca > 2:3178173/1‑93 (MQ=255)
aTCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagcgcag > 2:6192270/1‑93 (MQ=255)
aTCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagcgcag < 2:3034192/93‑1 (MQ=255)
aTCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagcgcag < 2:1443977/93‑1 (MQ=255)
tCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCcagcgcagc < 2:6998903/93‑1 (MQ=255)
|
AGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGGAAAC > NC_000913/4312244‑4312426
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTCAGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGGAAACA > NC_000913/4312241‑4312427
|
GTCAGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCG < SRR4302542.998794/94‑1 (MQ=60)
GTCAGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCG < SRR4302542.4265593/94‑1 (MQ=60)
GTCAGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCA < SRR4302542.5340111/94‑1 (MQ=60)
CAGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGG < SRR4302542.5319796/94‑1 (MQ=60)
AGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGC > SRR4302542.3560073/1‑94 (MQ=60)
AGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGC < SRR4302542.2891438/94‑1 (MQ=60)
AGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGC > SRR4302542.2499072/1‑94 (MQ=60)
GTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCGGAAATCAAGCGGGCC > SRR4302542.3117600/1‑94 (MQ=60)
TTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCG < SRR4302542.6131825/94‑1 (MQ=60)
TTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCG < SRR4302542.6779407/94‑1 (MQ=60)
TTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGG < SRR4302542.7379118/94‑1 (MQ=60)
TTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGG < SRR4302542.1718542/94‑1 (MQ=60)
GAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGAT > SRR4302542.3599263/1‑94 (MQ=60)
GAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGAT < SRR4302542.2010743/94‑1 (MQ=60)
AGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATG < SRR4302542.292684/94‑1 (MQ=60)
AGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATG > SRR4302542.3413602/1‑94 (MQ=60)
AGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATG < SRR4302542.511098/94‑1 (MQ=60)
GTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTA > SRR4302542.2616006/1‑94 (MQ=60)
TTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAA < SRR4302542.1041410/94‑1 (MQ=60)
AGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACA < SRR4302542.6843704/94‑1 (MQ=60)
AGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAAAACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACA > SRR4302542.1231637/1‑94 (MQ=60)
GCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAG < SRR4302542.1999044/94‑1 (MQ=60)
GCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAG < SRR4302542.6435733/94‑1 (MQ=60)
CGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGA > SRR4302542.6701502/1‑94 (MQ=60)
GCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATC < SRR4302542.2999242/94‑1 (MQ=60)
CAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCG < SRR4302542.3911005/94‑1 (MQ=60)
CAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCG < SRR4302542.4697152/94‑1 (MQ=60)
AGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGT > SRR4302542.1105309/1‑94 (MQ=60)
AGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGT > SRR4302542.644991/1‑94 (MQ=60)
GGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTC < SRR4302542.424706/94‑1 (MQ=60)
GGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGC < SRR4302542.5841725/94‑1 (MQ=60)
CGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAG < SRR4302542.5019234/94‑1 (MQ=60)
GTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGC > SRR4302542.1198726/1‑94 (MQ=60)
TGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCC > SRR4302542.6324059/1‑94 (MQ=60)
ACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCT > SRR4302542.5869757/1‑94 (MQ=60)
ACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCT < SRR4302542.344032/94‑1 (MQ=60)
ACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCT < SRR4302542.7460871/94‑1 (MQ=60)
CCTGTAACCCCTGCAAATCAAACACCATAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTG > SRR4302542.1911424/1‑94 (MQ=60)
CCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTG > SRR4302542.1707716/1‑94 (MQ=60)
CTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGT < SRR4302542.768814/94‑1 (MQ=60)
TGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTT < SRR4302542.2992821/94‑1 (MQ=60)
TGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTT < SRR4302542.3190929/94‑1 (MQ=60)
TGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTT < SRR4302542.1482171/94‑1 (MQ=60)
TGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGGT > SRR4302542.2453158/1‑94 (MQ=60)
GTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTC < SRR4302542.3300137/94‑1 (MQ=60)
GTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTC < SRR4302542.5536247/94‑1 (MQ=60)
GTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTC < SRR4302542.6319915/94‑1 (MQ=60)
GTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTC > SRR4302542.355963/1‑94 (MQ=60)
GTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTC < SRR4302542.4726043/94‑1 (MQ=60)
TAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCA < SRR4302542.15662/94‑1 (MQ=60)
AACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCAT > SRR4302542.6700069/1‑94 (MQ=60)
AACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCAT < SRR4302542.5640036/94‑1 (MQ=60)
AACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCAT > SRR4302542.5589827/1‑94 (MQ=60)
AACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCAT > SRR4302542.2334730/1‑94 (MQ=60)
ACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATC > SRR4302542.1653281/1‑94 (MQ=60)
ACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATC < SRR4302542.2557053/94‑1 (MQ=60)
CCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCC > SRR4302542.4094881/1‑94 (MQ=60)
CCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCC > SRR4302542.7123789/1‑94 (MQ=60)
cccctgcaacgaaaccCCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCG < SRR4302542.1810568/78‑1 (MQ=60)
CCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCG > SRR4302542.1391421/1‑94 (MQ=60)
CCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGG > SRR4302542.2377675/1‑94 (MQ=60)
CCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGG < SRR4302542.1105611/94‑1 (MQ=60)
CTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGC > SRR4302542.3729919/1‑94 (MQ=60)
TGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCG > SRR4302542.6773619/1‑94 (MQ=60)
TGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCG > SRR4302542.7328325/1‑94 (MQ=60)
GCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGG < SRR4302542.1644597/94‑1 (MQ=60)
CAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGG < SRR4302542.1408238/94‑1 (MQ=60)
AAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGC > SRR4302542.3963408/1‑94 (MQ=60)
AATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCC > SRR4302542.2967099/1‑94 (MQ=60)
AATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCC < SRR4302542.5440760/94‑1 (MQ=60)
AATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCC > SRR4302542.964458/1‑94 (MQ=60)
ATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCG > SRR4302542.936270/1‑94 (MQ=60)
AAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAA < SRR4302542.3178349/94‑1 (MQ=60)
AAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAA > SRR4302542.6146911/1‑94 (MQ=60)
AACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAA > SRR4302542.3159713/1‑94 (MQ=60)
CACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACC < SRR4302542.1226272/94‑1 (MQ=60)
CACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACC > SRR4302542.3995830/1‑94 (MQ=60)
CACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACC < SRR4302542.832708/94‑1 (MQ=60)
CACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACC < SRR4302542.2834041/94‑1 (MQ=60)
ACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCG < SRR4302542.4089708/94‑1 (MQ=60)
ACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGGCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCG < SRR4302542.4539493/94‑1 (MQ=60)
CCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGG < SRR4302542.5278117/94‑1 (MQ=60)
CACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGG < SRR4302542.7412423/94‑1 (MQ=60)
CAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGAT < SRR4302542.6331564/94‑1 (MQ=60)
CAAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGAT > SRR4302542.4750052/1‑94 (MQ=60)
AAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATC > SRR4302542.5449968/1‑94 (MQ=60)
AAACGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATC < SRR4302542.5300287/94‑1 (MQ=60)
AACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCG > SRR4302542.1404202/1‑94 (MQ=60)
ACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGG < SRR4302542.7377316/94‑1 (MQ=60)
CGGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGA < SRR4302542.1370576/94‑1 (MQ=60)
GGTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGAT > SRR4302542.6854330/1‑94 (MQ=60)
GTTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATC > SRR4302542.5874359/1‑94 (MQ=60)
GTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATC < SRR4302542.2101966/94‑1 (MQ=60)
TTCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCG > SRR4302542.412900/1‑94 (MQ=60)
TCCACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGC < SRR4302542.5410050/94‑1 (MQ=60)
CACCGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCA > SRR4302542.6903807/1‑94 (MQ=60)
CACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCA < SRR4302542.1825153/94‑1 (MQ=60)
CGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACG > SRR4302542.5910674/1‑94 (MQ=60)
CGTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACG > SRR4302542.414088/1‑94 (MQ=60)
GTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGC > SRR4302542.6641842/1‑94 (MQ=60)
GTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGC > SRR4302542.4488343/1‑94 (MQ=60)
GTGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGC < SRR4302542.3027649/94‑1 (MQ=60)
TGTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACGGATCGTCGCACCCCTGTTCATCCGGCGGGCCGCAAACCGGGACCGGATCGCCCACACC > SRR4302542.5395435/1‑94 (MQ=60)
GTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCC > SRR4302542.4240328/1‑94 (MQ=60)
GTGGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCC < SRR4302542.1861330/94‑1 (MQ=60)
GGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCA > SRR4302542.7178666/1‑94 (MQ=60)
GGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCA < SRR4302542.1853004/94‑1 (MQ=60)
GGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCA < SRR4302542.4767878/94‑1 (MQ=60)
GGCTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCA > SRR4302542.4392165/1‑94 (MQ=60)
GGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCCACGCCCCA > SRR4302542.3848393/1‑94 (MQ=60)
tgtttAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACaactctc > SRR4302542.4106950/6‑87 (MQ=60)
CTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGC > SRR4302542.7055223/1‑94 (MQ=60)
CTGAAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGC > SRR4302542.5179729/1‑94 (MQ=60)
AAATCAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCA > SRR4302542.1013780/1‑94 (MQ=60)
AATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACACCCCAGCGCAG > SRR4302542.3569170/1‑94 (MQ=60)
CAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGG > SRR4302542.6685049/1‑94 (MQ=60)
CAAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGG > SRR4302542.5188341/1‑94 (MQ=60)
AAGCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGGA < SRR4302542.7112759/94‑1 (MQ=60)
AAGCGGGCCCGGATGCTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAAACGGGATCGGATCGCCAACGCCCCAGCGCAGCGGA > SRR4302542.6168426/1‑94 (MQ=60)
GCGGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGGAAA < SRR4302542.5723661/94‑1 (MQ=60)
GGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGGAAACA < SRR4302542.7414116/94‑1 (MQ=60)
GGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGGAAACA > SRR4302542.1676596/1‑94 (MQ=60)
|
GTCAGTTTTGAGTGGTTGAGCGGCAGGGGCGTGACCTGTAACCCCTGCAAATCAAACACCACAAACGGTTCCACCGTGTGGCTGAAATCAAGCAGGCCCGGATGTTTAAACAGATCGTCGCAGCCCTGTTCATCCGGCGGGCCGTAAACCGGGATCGGATCGCCAACGCCCCAGCGCAGCGGAAACA > NC_000913/4312241‑4312427
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
