Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,395,798 |
A→G |
H270R (CAC→CGC) |
mutL → |
MutL |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,395,798 | 0 | A | G | 84.9%
| 576.9
/ 95.1
| 252 | H270R (CAC→CGC) | mutL | MutL |
| Reads supporting (aligned to +/- strand): ref base A (19/19); new base G (97/117); total (116/136) |
| Fisher's exact test for biased strand distribution p-value = 6.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.96e-02 |
Only 100 of 271 total aligned reads displayed.
TGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGA > NC_000913/4395708‑4395888
|
tGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATcgcg < 2:2861852/93‑1 (MQ=255)
cGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGAt < 1:6517079/93‑1 (MQ=255)
aTCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATcc > 2:764494/1‑93 (MQ=255)
aTCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATcc < 2:3649048/93‑1 (MQ=255)
aTCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATcc < 2:1565734/93‑1 (MQ=255)
ccAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGc > 2:3478220/1‑93 (MQ=255)
ccAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGc > 1:6959288/1‑93 (MQ=255)
ccAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGc < 2:6948730/93‑1 (MQ=255)
ccAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGc < 2:2006977/93‑1 (MQ=255)
ccAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGc > 1:246283/1‑93 (MQ=255)
cAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGcc < 1:3895492/93‑1 (MQ=255)
cAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGcc < 2:5609740/93‑1 (MQ=255)
aaaTCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCa < 2:522460/93‑1 (MQ=255)
aaTCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAg < 1:171048/93‑1 (MQ=255)
aaTCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAg < 1:6054964/93‑1 (MQ=255)
tCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGc > 2:3361043/1‑93 (MQ=255)
tCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCACCAGGc < 2:1916942/93‑1 (MQ=255)
caccacGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTg > 1:6144404/1‑93 (MQ=255)
accacGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGc > 1:5764053/1‑93 (MQ=255)
accacGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGc > 1:1467993/1‑93 (MQ=255)
accacGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGc < 2:5060885/93‑1 (MQ=255)
accacGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGc < 1:747510/93‑1 (MQ=255)
cacGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGa > 2:4525272/1‑93 (MQ=255)
acGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGaa < 2:1760381/93‑1 (MQ=255)
cGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAg > 2:4316976/1‑93 (MQ=255)
gCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGa > 1:6593522/1‑93 (MQ=255)
cccGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGAc > 1:3949623/1‑93 (MQ=255)
cccGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGAc < 2:139880/93‑1 (MQ=255)
ccGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACa > 2:6796860/1‑93 (MQ=255)
ccGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACa > 2:6589858/1‑93 (MQ=255)
ccGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACa > 1:3119735/1‑93 (MQ=255)
cGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACaa > 1:4459640/1‑93 (MQ=255)
gCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACaaa < 1:913938/93‑1 (MQ=255)
gCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACaaa < 2:4190329/93‑1 (MQ=255)
gCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACaaa < 2:6621665/93‑1 (MQ=255)
gCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACaaa < 1:1230884/93‑1 (MQ=255)
aCTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACt > 2:2086388/1‑93 (MQ=255)
cTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTg > 1:5915803/1‑93 (MQ=255)
cTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTg > 1:5523130/1‑93 (MQ=255)
cTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTg > 1:1586064/1‑93 (MQ=255)
cTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTg > 1:4357597/1‑93 (MQ=255)
tGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTgg < 1:3211236/93‑1 (MQ=255)
gCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTgggg < 1:1990850/93‑1 (MQ=255)
gCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTgggg < 2:7195158/93‑1 (MQ=255)
gCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCCAAGACAAACTgggg < 2:6442125/93‑1 (MQ=255)
cAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTggggg > 1:3541208/1‑93 (MQ=255)
aGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGc > 2:5282099/1‑93 (MQ=255)
aGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGc < 2:3781588/93‑1 (MQ=255)
aGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGc < 1:2694048/93‑1 (MQ=255)
gAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGcc > 1:5993638/1‑93 (MQ=255)
gAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGcc > 1:5274398/1‑93 (MQ=255)
aTTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGAt < 2:2271499/93‑1 (MQ=255)
aTTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGAt < 1:5625286/93‑1 (MQ=255)
ttCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATc > 2:2724225/1‑93 (MQ=255)
ttCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATc < 1:76947/93‑1 (MQ=255)
tCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCa > 1:88546/1‑93 (MQ=255)
tCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCa < 2:5421452/93‑1 (MQ=255)
aGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGc > 1:2037893/1‑93 (MQ=255)
gTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCa < 2:2971192/93‑1 (MQ=255)
tATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCaa > 2:2433565/1‑93 (MQ=255)
aTTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAAc < 2:6731398/93‑1 (MQ=255)
ttGCTACGTGAACTGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAAcc < 2:1105475/93‑1 (MQ=255)
ttGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAAcc > 1:2992173/1‑93 (MQ=255)
ttGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAAcc > 1:3604647/1‑93 (MQ=255)
cTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGc < 2:6491098/93‑1 (MQ=255)
tACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCa < 2:7285124/93‑1 (MQ=255)
tACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCa > 2:5529124/1‑93 (MQ=255)
aCGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCAt < 1:215575/93‑1 (MQ=255)
cGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCAtt < 2:4973670/93‑1 (MQ=255)
tGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTtg > 1:1119856/1‑93 (MQ=255)
gAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTtgt < 2:3127604/93‑1 (MQ=255)
aaCGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTtgtg < 1:7247699/93‑1 (MQ=255)
aaCGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTtgtg < 2:3578821/93‑1 (MQ=255)
ggTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGtgttg < 2:91024/93‑1 (MQ=255)
tCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTa < 1:6756918/93‑1 (MQ=255)
cGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTAt < 2:3172434/93‑1 (MQ=255)
gCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATc < 2:2507933/93‑1 (MQ=255)
cATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCt > 2:327678/1‑93 (MQ=255)
atgatgCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTg > 1:3324821/1‑93 (MQ=255)
atgatgCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTg < 2:1164308/93‑1 (MQ=255)
tgatgCGCGATTGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTgg > 1:4869383/1‑93 (MQ=255)
tgatgCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTgg > 1:1007138/1‑93 (MQ=255)
tgatgCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTgg > 1:2225724/1‑93 (MQ=255)
gatgCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGga < 1:7161537/93‑1 (MQ=255)
tgCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGgaga > 2:1299513/1‑93 (MQ=255)
gcgATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCg > 2:4692401/1‑93 (MQ=255)
gcgATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCg < 1:6869493/93‑1 (MQ=255)
cGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCca < 2:5582110/93‑1 (MQ=255)
gCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCcac > 2:1709278/1‑93 (MQ=255)
ccTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCcaca > 2:2180619/1‑93 (MQ=255)
cTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACAt > 2:5859704/1‑93 (MQ=255)
tGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATc < 1:4193643/93‑1 (MQ=255)
gATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCa > 2:1624297/1‑93 (MQ=255)
gATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCa < 1:670944/93‑1 (MQ=255)
gATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCa < 1:2488353/93‑1 (MQ=255)
gATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCa < 1:7137352/93‑1 (MQ=255)
tcaatcgCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAgg < 2:406812/93‑1 (MQ=255)
tcaatcgCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAgg < 2:2828303/93‑1 (MQ=255)
tcaatcaCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAgg > 1:4767949/1‑93 (MQ=255)
tcaCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGa < 2:5305588/93‑1 (MQ=255)
|
TGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGA > NC_000913/4395708‑4395888
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGACGT > NC_000913/4395705‑4395891
|
GGGTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCG < SRR4302542.7591565/94‑1 (MQ=60)
GGGTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCG < SRR4302542.5198028/94‑1 (MQ=60)
GGGTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCG < SRR4302542.2816767/94‑1 (MQ=60)
GGGTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCG < SRR4302542.2614322/94‑1 (MQ=60)
GGGTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCG > SRR4302542.1672362/1‑94 (MQ=60)
GGGTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCG < SRR4302542.2146289/94‑1 (MQ=60)
GTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCG < SRR4302542.4975848/94‑1 (MQ=60)
GTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCG > SRR4302542.1649154/1‑94 (MQ=60)
GGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCG < SRR4302542.2445614/94‑1 (MQ=60)
GCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGA > SRR4302542.7498592/1‑94 (MQ=60)
CCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGAT < SRR4302542.1129201/94‑1 (MQ=60)
CGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATC > SRR4302542.6986681/1‑94 (MQ=60)
CGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATC < SRR4302542.6581305/94‑1 (MQ=60)
CGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATC > SRR4302542.1640640/1‑94 (MQ=60)
ATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCG < SRR4302542.4601288/94‑1 (MQ=60)
TCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGC > SRR4302542.7027664/1‑94 (MQ=60)
TCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGC > SRR4302542.248390/1‑94 (MQ=60)
CAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCA < SRR4302542.3933951/94‑1 (MQ=60)
AAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAG < SRR4302542.2579107/94‑1 (MQ=60)
AATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGGTCGCCTGATCAATCACGCGATCCGCCAGG < SRR4302542.6065349/94‑1 (MQ=60)
AATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGG < SRR4302542.4306220/94‑1 (MQ=60)
AATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGG < SRR4302542.172489/94‑1 (MQ=60)
AATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGG < SRR4302542.6113576/94‑1 (MQ=60)
CACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCT > SRR4302542.3389207/1‑94 (MQ=60)
CACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCT > SRR4302542.3315865/1‑94 (MQ=60)
CACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCT < SRR4302542.5034322/94‑1 (MQ=60)
CACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCT < SRR4302542.3197973/94‑1 (MQ=60)
ACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTG > SRR4302542.6203854/1‑94 (MQ=60)
CACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGC > SRR4302542.1480668/1‑94 (MQ=60)
CACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGC > SRR4302542.5820003/1‑94 (MQ=60)
ACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCG > SRR4302542.4203585/1‑94 (MQ=60)
ACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCG > SRR4302542.3692909/1‑94 (MQ=60)
ACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCG < SRR4302542.753984/94‑1 (MQ=60)
ACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCG < SRR4302542.2047566/94‑1 (MQ=60)
CACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAA > SRR4302542.1411016/1‑94 (MQ=60)
ACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAG < SRR4302542.2565978/94‑1 (MQ=60)
CGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGA > SRR4302542.5474926/1‑94 (MQ=60)
CGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGA > SRR4302542.6658488/1‑94 (MQ=60)
CGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATAAATCGCGCGATCCGCCAGGCCTGCGAAGA < SRR4302542.6746060/94‑1 (MQ=60)
GCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGAC > SRR4302542.3988623/1‑94 (MQ=60)
CCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACA > SRR4302542.3149411/1‑94 (MQ=60)
CCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAA > SRR4302542.4503386/1‑94 (MQ=60)
CCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAA > SRR4302542.3044403/1‑94 (MQ=60)
GCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAAC < SRR4302542.5997285/94‑1 (MQ=60)
GCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAAC < SRR4302542.1241468/94‑1 (MQ=60)
GCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAAC < SRR4302542.921818/94‑1 (MQ=60)
ACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTG > SRR4302542.4400395/1‑94 (MQ=60)
ACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTG > SRR4302542.1599748/1‑94 (MQ=60)
ACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTG > SRR4302542.5973131/1‑94 (MQ=60)
ACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTG > SRR4302542.5576808/1‑94 (MQ=60)
TGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGG > SRR4302542.6695238/1‑94 (MQ=60)
TGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGG < SRR4302542.3241634/94‑1 (MQ=60)
TGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGG > SRR4302542.1179982/1‑94 (MQ=60)
GCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGG < SRR4302542.1746719/94‑1 (MQ=60)
GCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGG < SRR4302542.2008030/94‑1 (MQ=60)
ACAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGG > SRR4302542.3574293/1‑94 (MQ=60)
CAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGC > SRR4302542.2184797/1‑94 (MQ=60)
AGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCC > SRR4302542.5325651/1‑94 (MQ=60)
AGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCC < SRR4302542.6606906/94‑1 (MQ=60)
AGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCC > SRR4302542.5910656/1‑94 (MQ=60)
AGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCC < SRR4302542.2720027/94‑1 (MQ=60)
AGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCC > SRR4302542.6051691/1‑94 (MQ=60)
ATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATC < SRR4302542.6151583/94‑1 (MQ=60)
ATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATC > SRR4302542.906866/1‑94 (MQ=60)
ATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATC < SRR4302542.7307754/94‑1 (MQ=60)
ATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATC > SRR4302542.2108889/1‑94 (MQ=60)
ATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATC > SRR4302542.3314478/1‑94 (MQ=60)
ATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATC < SRR4302542.5679913/94‑1 (MQ=60)
TTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCA < SRR4302542.77584/94‑1 (MQ=60)
TTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCA > SRR4302542.89285/1‑94 (MQ=60)
TTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCA > SRR4302542.5706238/1‑94 (MQ=60)
TCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAG < SRR4302542.7215602/94‑1 (MQ=60)
CAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGC > SRR4302542.7442591/1‑94 (MQ=60)
CAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGC > SRR4302542.2055515/1‑94 (MQ=60)
AGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCA > SRR4302542.5301794/1‑94 (MQ=60)
ATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACC > SRR4302542.7223900/1‑94 (MQ=60)
ATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACC > SRR4302542.3020809/1‑94 (MQ=60)
ATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACC > SRR4302542.3638237/1‑94 (MQ=60)
GCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGC < SRR4302542.3576803/94‑1 (MQ=60)
CTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCA < SRR4302542.6348639/94‑1 (MQ=60)
CTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCA > SRR4302542.2004994/1‑94 (MQ=60)
CTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCA > SRR4302542.4483754/1‑94 (MQ=60)
ACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATT < SRR4302542.217429/94‑1 (MQ=60)
CGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTT < SRR4302542.6819226/94‑1 (MQ=60)
GTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTG > SRR4302542.1129428/1‑94 (MQ=60)
GAACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTG < SRR4302542.5748848/94‑1 (MQ=60)
AACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGT > SRR4302542.5663075/1‑94 (MQ=60)
AACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGT < SRR4302542.7318765/94‑1 (MQ=60)
AACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGT < SRR4302542.4429412/94‑1 (MQ=60)
AACGGTCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGT < SRR4302542.5943611/94‑1 (MQ=60)
TCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTAT < SRR4302542.3235859/94‑1 (MQ=60)
TCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTAT < SRR4302542.6823383/94‑1 (MQ=60)
TCGCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTAT > SRR4302542.1580969/1‑94 (MQ=60)
CGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATC > SRR4302542.5987601/1‑94 (MQ=60)
GCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCT > SRR4302542.4869504/1‑94 (MQ=60)
GCATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCT > SRR4302542.4280792/1‑94 (MQ=60)
CATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTG > SRR4302542.3356127/1‑94 (MQ=60)
ATGATGCGCGATTGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGG > SRR4302542.4916789/1‑94 (MQ=60)
ATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGG < SRR4302542.7181739/94‑1 (MQ=60)
ATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGG > SRR4302542.2244874/1‑94 (MQ=60)
ATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGG < SRR4302542.3422038/94‑1 (MQ=60)
ATGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGG > SRR4302542.1015817/1‑94 (MQ=60)
ATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGG > SRR4302542.6459884/1‑94 (MQ=60)
TGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGA < SRR4302542.2769291/94‑1 (MQ=60)
TGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGA < SRR4302542.692742/94‑1 (MQ=60)
TGATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGA > SRR4302542.3952255/1‑94 (MQ=60)
GATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAG < SRR4302542.7231786/94‑1 (MQ=60)
GATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAG < SRR4302542.2264437/94‑1 (MQ=60)
ATGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGA < SRR4302542.6809351/94‑1 (MQ=60)
TGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGAT < SRR4302542.3965287/94‑1 (MQ=60)
TGCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGAT < SRR4302542.7197859/94‑1 (MQ=60)
GCGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATC < SRR4302542.2947928/94‑1 (MQ=60)
CGCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCG > SRR4302542.5333188/1‑94 (MQ=60)
GCGATCGCCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGA < SRR4302542.6936972/94‑1 (MQ=60)
CGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGAC > SRR4302542.2227199/1‑94 (MQ=60)
GATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACC > SRR4302542.910122/1‑94 (MQ=60)
TCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACAT > SRR4302542.7596725/1‑94 (MQ=60)
CCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACAT > SRR4302542.3757001/1‑94 (MQ=60)
CCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACAT < SRR4302542.956244/94‑1 (MQ=60)
CCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACAT < SRR4302542.1178004/94‑1 (MQ=60)
CCTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACAT > SRR4302542.1464829/1‑94 (MQ=60)
CTGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATC > SRR4302542.7560629/1‑94 (MQ=60)
CTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATC > SRR4302542.7025220/1‑94 (MQ=60)
TGATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCA < SRR4302542.4234991/94‑1 (MQ=60)
GATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAG < SRR4302542.676731/94‑1 (MQ=60)
GATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAG < SRR4302542.2512497/94‑1 (MQ=60)
GATCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAG < SRR4302542.820270/94‑1 (MQ=60)
GATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAG < SRR4302542.7207398/94‑1 (MQ=60)
ATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGG > SRR4302542.4814424/1‑94 (MQ=60)
TCAATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCGACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGT < SRR4302542.6170167/94‑1 (MQ=60)
AATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGG < SRR4302542.2511052/94‑1 (MQ=60)
AATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGG > SRR4302542.455771/1‑94 (MQ=60)
ATCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGGCCCACATCAGGTGGA > SRR4302542.996442/1‑94 (MQ=60)
TCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGAC < SRR4302542.6313039/94‑1 (MQ=60)
TCGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGAC < SRR4302542.4817632/94‑1 (MQ=60)
TCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGAC < SRR4302542.2092224/94‑1 (MQ=60)
CGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGACG < SRR4302542.2675194/94‑1 (MQ=60)
CGCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCCGTCAACCACCGGGATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGACG < SRR4302542.5943203/94‑1 (MQ=60)
GCGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGACGT > SRR4302542.650741/1‑94 (MQ=60)
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GGGTGGCCGATCCAAATCACACCACGCCCGCACTGGCAGAAATTCAGTATTGCTACGTGAACGGTCGCATGATGCGCGATCGCCTGATCAATCACGCGATCCGCCAGGCCTGCGAAGACAAACTGGGGGCCGATCAGCAACCGGCATTTGTGTTGTATCTGGAGATCGACCCACATCAGGTGGACGT > NC_000913/4395705‑4395891
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
