Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,448,541 |
+C |
intergenic (+46/‑92) |
ytfQ → / → ytfR |
putative LACI‑type transcriptional regulator/YtfR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,448,541 | 1 | . | C | 99.2%
| 711.1
/ ‑1.9
| 246 | intergenic (+46/‑92) | ytfQ/ytfR | putative LACI‑type transcriptional regulator/YtfR |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (143/101); total (144/102) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 |
Only 100 of 257 total aligned reads displayed.
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CG‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > NC_000913/4448450‑4448623
|
tACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑Cgc > 1:6722404/1‑92 (MQ=255)
tACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑Cgc > 1:3245431/1‑92 (MQ=255)
tACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑Cgc > 2:5395026/1‑92 (MQ=255)
aCCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑Cgcg > 1:4391703/1‑91 (MQ=255)
ccGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑Cgcgc < 2:3073286/93‑4 (MQ=255)
ccGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑Cgcgc < 2:4089614/93‑4 (MQ=255)
cGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑Cgcgcc < 2:332718/93‑5 (MQ=255)
aagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCgg > 2:2707693/1‑93 (MQ=37)
agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGc < 2:1318646/93‑1 (MQ=37)
agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGc > 1:4348826/1‑93 (MQ=37)
gaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCg > 2:6063031/1‑93 (MQ=37)
gaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCg > 2:5019078/1‑93 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGa > 1:5622992/1‑93 (MQ=37)
aaTTAGAGAAGAAGAAAAAGATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGa < 2:3423477/93‑1 (MQ=25)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGAt > 1:4928048/1‑93 (MQ=37)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGAt > 1:5207220/1‑93 (MQ=37)
ttAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATg > 2:1515780/1‑93 (MQ=37)
tAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATgg > 2:6259482/1‑93 (MQ=37)
agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGc < 2:5721487/93‑1 (MQ=37)
gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCa > 1:2526579/1‑93 (MQ=37)
aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCAc < 1:4012173/93‑1 (MQ=37)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACt > 2:2920139/1‑93 (MQ=37)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTg > 1:2955843/1‑93 (MQ=37)
agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGaa > 2:4692212/1‑93 (MQ=37)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAg > 1:1822832/1‑93 (MQ=37)
aaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGcc > 2:1955109/1‑93 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 1:5325376/1‑93 (MQ=37)
tatGGGGTATTGGGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt < 1:6473544/93‑1 (MQ=25)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 1:4091542/1‑93 (MQ=25)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 2:5913782/1‑93 (MQ=37)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt < 2:4385149/93‑1 (MQ=25)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 2:2840495/1‑93 (MQ=37)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 1:2612497/1‑93 (MQ=37)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAGG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATg < 2:323074/93‑1 (MQ=37)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGc > 1:4555668/1‑93 (MQ=25)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGa < 2:1548424/93‑1 (MQ=25)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGa < 1:1139022/93‑1 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 1:5713459/1‑93 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 1:5996184/1‑93 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 2:2740288/1‑93 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 2:4598861/1‑93 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 1:7317746/1‑93 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 1:1877079/1‑93 (MQ=25)
aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt > 1:2242021/1‑93 (MQ=25)
aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt < 1:7496355/93‑1 (MQ=25)
tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 2:2060734/93‑1 (MQ=25)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc > 2:1157098/1‑93 (MQ=25)
aGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAcc < 1:7146641/93‑1 (MQ=25)
gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCGCTGAAGCCTGATGCGACGCTTACcgcg > 2:2392762/1‑93 (MQ=25)
gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg > 2:2314919/1‑93 (MQ=25)
ttGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcgg > 1:5847453/1‑92 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTc < 1:3182820/93‑1 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt > 1:86725/1‑93 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 1:3429580/93‑1 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 1:2932914/93‑1 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt > 1:5375207/1‑93 (MQ=25)
tATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCCCG‑C‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa > 1:5086182/1‑93 (MQ=21)
tGCCTGATGCCGATTCGTAGGCCGGATAAGCCGCCCC‑‑CG‑C‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc < 1:4059554/93‑1 (MQ=21)
tGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc > 2:580805/1‑93 (MQ=21)
gCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa > 2:4892112/1‑93 (MQ=21)
gCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa > 2:4903233/1‑93 (MQ=21)
ccTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt < 2:4214896/93‑1 (MQ=21)
ccTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt < 1:6564613/93‑1 (MQ=21)
cTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg > 1:6443873/1‑93 (MQ=21)
cTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg > 1:3604922/1‑93 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:6380196/1‑93 (MQ=21)
gATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc < 2:5188721/93‑1 (MQ=21)
gATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc < 1:3926248/93‑1 (MQ=21)
aTGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCt > 1:2843619/1‑93 (MQ=21)
tGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa > 2:6825438/1‑93 (MQ=21)
tGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa > 2:4842893/1‑93 (MQ=21)
tGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa > 1:1112484/1‑93 (MQ=21)
gCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAc < 1:1237718/93‑1 (MQ=21)
gCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAc > 2:1124695/1‑93 (MQ=21)
cGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg > 1:5732432/1‑93 (MQ=21)
gATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg < 1:3513714/93‑1 (MQ=21)
aTTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg > 1:2077373/1‑93 (MQ=21)
ttCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 2:3793551/1‑93 (MQ=18)
ttCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa < 1:2736519/93‑1 (MQ=21)
tCGTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAg < 2:7432058/93‑1 (MQ=21)
gTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa > 1:380861/1‑93 (MQ=21)
gTAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa < 2:7149799/93‑1 (MQ=21)
tAGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAc > 2:1285063/1‑93 (MQ=21)
aGGCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACg < 1:7230795/93‑1 (MQ=21)
ggCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGc < 1:1489832/93‑1 (MQ=21)
ggCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGc < 1:5748285/93‑1 (MQ=21)
gCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCt > 1:4579200/1‑93 (MQ=21)
gCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCt < 2:6991389/93‑1 (MQ=21)
gCCGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCt > 2:2640578/1‑93 (MQ=21)
cGGATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt > 2:6339686/1‑93 (MQ=21)
ggATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTa < 1:707388/93‑1 (MQ=21)
gATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac > 2:3768332/1‑93 (MQ=21)
gATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac < 2:5131447/93‑1 (MQ=25)
gATAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac > 1:4698327/1‑93 (MQ=21)
aTAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTaca > 2:5612093/1‑93 (MQ=25)
tAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac < 2:1715684/93‑1 (MQ=25)
tAAG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac > 2:5318358/1‑93 (MQ=25)
aaG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc < 1:2675542/93‑1 (MQ=25)
aaG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc > 2:3664378/1‑93 (MQ=25)
aG‑‑GCGCT‑‑CGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg < 2:6786168/93‑1 (MQ=25)
|
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CG‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > NC_000913/4448450‑4448623
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGGCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448449‑4448634
|
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGC > SRR4302542.6788598/1‑94 (MQ=60)
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGC > SRR4302542.3276105/1‑94 (MQ=60)
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcg > SRR4302542.4434792/1‑92 (MQ=60)
CCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgcc > SRR4302542.3223744/1‑90 (MQ=60)
CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccg > SRR4302542.2126345/1‑89 (MQ=60)
GCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgc > SRR4302542.5001654/1‑88 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgca > SRR4302542.6909976/1‑87 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgca > SRR4302542.6033456/1‑87 (MQ=60)
AAAAGAAGAATTAGAGAAGAAGAAAAATATTGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgcat < SRR4302542.1643938/94‑9 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgcatcc < SRR4302542.6664237/94‑11 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgcatcc < SRR4302542.4693426/94‑11 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgcatcc < SRR4302542.3313130/94‑11 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCG > SRR4302542.2440704/1‑94 (MQ=60)
GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGG > SRR4302542.5234928/1‑94 (MQ=60)
GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGG > SRR4302542.3322071/1‑94 (MQ=60)
AAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGC < SRR4302542.4338869/94‑1 (MQ=60)
AAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGC > SRR4302542.4391552/1‑94 (MQ=60)
AGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCG < SRR4302542.2005708/94‑1 (MQ=60)
GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGA > SRR4302542.6009909/1‑94 (MQ=60)
GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGA > SRR4302542.5677607/1‑94 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGAT > SRR4302542.4975953/1‑94 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGAT > SRR4302542.5257864/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATG > SRR4302542.6732617/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATG < SRR4302542.5399290/94‑1 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTG > SRR4302542.3971094/1‑94 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTG > SRR4302542.3463270/1‑94 (MQ=60)
GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGC < SRR4302542.291159/94‑1 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCA > SRR4302542.4528473/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCA < SRR4302542.7193806/94‑1 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCA > SRR4302542.3184382/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCA > SRR4302542.2551081/1‑94 (MQ=60)
GAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCAC > SRR4302542.4321642/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACT > SRR4302542.785267/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACT < SRR4302542.4051765/94‑1 (MQ=60)
AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTG > SRR4302542.2984139/1‑94 (MQ=60)
AAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAA > SRR4302542.2670944/1‑94 (MQ=60)
AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAG > SRR4302542.1838619/1‑94 (MQ=60)
AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAG > SRR4302542.5805019/1‑94 (MQ=60)
GAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGC > SRR4302542.4611323/1‑94 (MQ=60)
GAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGC > SRR4302542.4065608/1‑94 (MQ=60)
AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCC > SRR4302542.7310851/1‑94 (MQ=60)
AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCC < SRR4302542.4084683/94‑1 (MQ=60)
AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCC < SRR4302542.5777753/94‑1 (MQ=60)
AAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCT < SRR4302542.2006433/94‑1 (MQ=60)
AAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCT > SRR4302542.6509954/1‑94 (MQ=60)
AATATGGGGTATTGAGGTTTGCTATGCCTGATGCCGATTCGTGGGCGGGAAAGG‑‑G‑‑CCCT‑‑C‑GCGCCCCACCCGGCGATGGTGCACTGAAGCCTGA < SRR4302542.2544991/94‑1 (MQ=34)
AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGA < SRR4302542.2825998/94‑1 (MQ=60)
AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGA > SRR4302542.5189357/1‑94 (MQ=60)
AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGA > SRR4302542.5377111/1‑94 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGAT > SRR4302542.4131899/1‑94 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGAT < SRR4302542.1210348/94‑1 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGAT > SRR4302542.2637747/1‑94 (MQ=60)
TATGGGGTATTGGGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATG < SRR4302542.6537323/94‑1 (MQ=60)
TATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATG < SRR4302542.4440142/94‑1 (MQ=60)
ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGC > SRR4302542.7349173/1‑94 (MQ=60)
ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGC > SRR4302542.4600240/1‑94 (MQ=60)
ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGC > SRR4302542.6795162/1‑94 (MQ=60)
TGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCG > SRR4302542.660482/1‑94 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCCCCCG‑‑CGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGAC < SRR4302542.2968844/94‑1 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCaga > SRR4302542.3741692/1‑91 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGAC < SRR4302542.1148777/94‑1 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG < SRR4302542.2909352/94‑1 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG > SRR4302542.5678996/1‑94 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG > SRR4302542.6552998/1‑94 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG > SRR4302542.3610506/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.552218/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.7389422/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.6054261/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.1893322/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.7280869/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.5768915/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302542.2261301/1‑94 (MQ=60)
ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT < SRR4302542.7569997/94‑1 (MQ=60)
TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC > SRR4302542.1583641/1‑94 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC > SRR4302542.1702450/1‑94 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC < SRR4302542.2741431/94‑1 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC > SRR4302542.4717273/1‑94 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG < SRR4302542.7216763/94‑1 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG < SRR4302542.1196738/94‑1 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG > SRR4302542.3092630/1‑94 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG < SRR4302542.6630153/94‑1 (MQ=60)
GGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCG > SRR4302542.2154924/1‑94 (MQ=60)
GGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCG > SRR4302542.4434096/1‑94 (MQ=60)
GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGG > SRR4302542.5904165/1‑94 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT > SRR4302542.5427437/1‑94 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT < SRR4302542.5774909/94‑1 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT > SRR4302542.87445/1‑94 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT < SRR4302542.3212976/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302542.7164395/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302542.2961007/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302542.3461697/94‑1 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA < SRR4302542.471876/94‑1 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCCCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA > SRR4302542.5135613/1‑94 (MQ=60)
TGCCTGATGCCGATTCGTAGGCCGGATAAGCCG‑‑CCCC‑‑CGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA < SRR4302542.4099587/94‑1 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG < SRR4302542.6629306/94‑1 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302542.6507330/1‑94 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302542.3638513/1‑94 (MQ=60)
CTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCCCTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC < SRR4302542.7520049/94‑1 (MQ=60)
CTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC > SRR4302542.1841663/1‑94 (MQ=60)
CTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC > SRR4302542.3970719/1‑94 (MQ=60)
GATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT > SRR4302542.2870943/1‑94 (MQ=60)
GATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT < SRR4302542.3964988/94‑1 (MQ=60)
ATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA > SRR4302542.1121997/1‑94 (MQ=60)
ATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA > SRR4302542.5426061/1‑94 (MQ=60)
GCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACT < SRR4302542.1248354/94‑1 (MQ=60)
CCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG > SRR4302542.2708474/1‑94 (MQ=60)
CCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG > SRR4302542.5788065/1‑94 (MQ=60)
GATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG > SRR4302542.2095319/1‑94 (MQ=60)
GATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG < SRR4302542.3546562/94‑1 (MQ=60)
GATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG > SRR4302542.5802526/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302542.583832/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302542.3677113/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302542.132648/1‑94 (MQ=60)
TTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG < SRR4302542.2762909/94‑1 (MQ=60)
TTCGGAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG < SRR4302542.2613077/94‑1 (MQ=60)
TCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGC < SRR4302542.7598885/94‑1 (MQ=60)
CGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA > SRR4302542.384172/1‑94 (MQ=60)
GTGGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC < SRR4302542.3937999/94‑1 (MQ=60)
GTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC < SRR4302542.3222798/94‑1 (MQ=60)
TAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACG > SRR4302542.639247/1‑94 (MQ=60)
AGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGC < SRR4302542.7301724/94‑1 (MQ=60)
AGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGC < SRR4302542.4875366/94‑1 (MQ=60)
AGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGC > SRR4302542.6116069/1‑94 (MQ=60)
GGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCT > SRR4302542.4623995/1‑94 (MQ=60)
GGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCT < SRR4302542.5804082/94‑1 (MQ=60)
GGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCT < SRR4302542.1502714/94‑1 (MQ=60)
CGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA > SRR4302542.4123934/1‑94 (MQ=60)
GGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > SRR4302542.4744192/1‑94 (MQ=60)
GGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > SRR4302542.2505403/1‑94 (MQ=60)
GGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC < SRR4302542.713505/94‑1 (MQ=60)
GGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC < SRR4302542.3521146/94‑1 (MQ=60)
ATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAC < SRR4302542.489359/94‑1 (MQ=60)
AAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACTG > SRR4302542.5119039/1‑94 (MQ=60)
AAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG < SRR4302542.2701367/94‑1 (MQ=60)
AAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG < SRR4302542.5750377/94‑1 (MQ=60)
AAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > SRR4302542.1146987/1‑94 (MQ=60)
AG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG < SRR4302542.5365483/94‑1 (MQ=60)
G‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG < SRR4302542.672412/94‑1 (MQ=60)
CGCCG‑‑‑CATCTGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA > SRR4302542.3582370/1‑94 (MQ=60)
CGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA > SRR4302542.5190817/1‑94 (MQ=60)
GCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > SRR4302542.3289326/1‑94 (MQ=60)
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ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGGCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448449‑4448634
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
