Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,474,849 |
20 bp→GTATTTCCCGGCATCTTTATAGCGATAGCA |
intergenic (+24/+2) |
yjgL → / ← argI |
hypothetical protein/ornithine carbamoyltransferase 1 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4474849 |
4474868 |
20 |
250 [0] |
[0] 273 |
yjgL/argI |
hypothetical protein/ornithine carbamoyltransferase 1 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4474848 | 0 (0.000) | 178 (0.900)
+GTATTTCCCGGCATCTTTATAGCGATAGCA |
89/124 |
0.3 |
100% |
intergenic (+23/+22) |
yjgL/argI |
hypothetical protein/ornithine carbamoyltransferase 1 |
| ? | NC_000913 |
4474869 = |
0 (0.000) | intergenic (+44/+1) |
yjgL/argI |
hypothetical protein/ornithine carbamoyltransferase 1 |
GATK/CNVnator alignment
N/A
