Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,620,966 |
T→C |
S241G (AGC→GGC) |
lplA ← |
lipoate‑protein ligase A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,620,966 | 0 | T | C | 82.8%
| 581.0
/ 120.7
| 273 | S241G (AGC→GGC) | lplA | lipoate‑protein ligase A |
| Reads supporting (aligned to +/- strand): ref base T (20/27); new base C (111/115); total (131/142) |
| Fisher's exact test for biased strand distribution p-value = 4.28e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.52e-01 |
Only 100 of 275 total aligned reads displayed.
ACGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGGG > NC_000913/4620875‑4621058
|
aCGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTa > 2:257885/1‑93 (MQ=255)
cGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCAc < 2:6487041/93‑1 (MQ=255)
gTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCAct < 2:4856239/93‑1 (MQ=255)
gTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCAct > 1:4194335/1‑93 (MQ=255)
gTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCAct > 2:5139297/1‑93 (MQ=255)
tCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCActc < 2:314068/93‑1 (MQ=255)
tCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCActc < 2:2291049/93‑1 (MQ=255)
gAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTg > 2:907434/1‑93 (MQ=255)
aaaTGCAGTTCCACGCCGCTCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTgg < 2:3693441/93‑1 (MQ=255)
aaaTGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTgg < 1:7520693/93‑1 (MQ=255)
aaTGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGc > 2:4602557/1‑93 (MQ=255)
aTGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCg > 1:237006/1‑93 (MQ=255)
tGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCGTGACCGAAGTTCCATTCCCAGCCACTCTGGCgg < 2:3813224/93‑1 (MQ=255)
tGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCgg > 1:6344440/1‑93 (MQ=255)
tGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCgg < 2:4490032/93‑1 (MQ=255)
gCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCggg > 1:1642374/1‑93 (MQ=255)
gTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCaa > 2:6065501/1‑93 (MQ=255)
ttCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCaaa < 2:4740501/93‑1 (MQ=255)
ttCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCaaa < 1:4909464/93‑1 (MQ=255)
tCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAg > 1:5513704/1‑93 (MQ=255)
ccACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAgg < 1:6817943/93‑1 (MQ=255)
aCGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGtt > 1:5330387/1‑93 (MQ=255)
aCGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGtt < 2:2463087/93‑1 (MQ=255)
cgccgcCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAGGttt < 2:4248406/93‑1 (MQ=255)
cgccgcCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGttt < 1:5567758/93‑1 (MQ=255)
cgccCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCgg < 1:3692792/93‑1 (MQ=255)
cgccCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCgg > 2:3127384/1‑93 (MQ=255)
gccCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGc > 1:1955323/1‑93 (MQ=255)
ccAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAGGTTTCGGCGaa < 2:2687182/93‑1 (MQ=255)
ccAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAGGTTTCGGCGaa < 2:3656528/93‑1 (MQ=255)
cAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAg > 1:7085698/1‑93 (MQ=255)
ggTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGtt > 2:391197/1‑93 (MQ=255)
gTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGttt > 1:6470211/1‑93 (MQ=255)
tAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTg < 2:6909144/93‑1 (MQ=255)
aaaGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTgg < 1:726133/93‑1 (MQ=255)
aaGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGc < 1:7020758/93‑1 (MQ=255)
aaGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGc < 1:2827978/93‑1 (MQ=255)
gCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCaa < 2:4632201/93‑1 (MQ=255)
gCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCaa > 2:2268863/1‑93 (MQ=255)
gCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCaa > 2:1774995/1‑93 (MQ=255)
gCGTTCACCCAGCAGATGCGAGAAGGCCGGAGCCTGACCGAAGTTCCATCCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCaa < 1:2693925/93‑1 (MQ=255)
cGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAg < 2:4135439/93‑1 (MQ=255)
gTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGt < 2:1395605/93‑1 (MQ=255)
ttCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTc < 1:1753174/93‑1 (MQ=255)
tCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCt < 2:792419/93‑1 (MQ=255)
cATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTg < 2:1295135/93‑1 (MQ=255)
cATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTg > 2:1924895/1‑93 (MQ=255)
aaTCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTg < 1:5129286/92‑1 (MQ=255)
aTCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTgg < 1:963276/93‑1 (MQ=255)
aTCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCAGCGAAGTTTGGCAAGTCTgg > 2:438016/1‑93 (MQ=255)
tCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGc < 2:1562983/93‑1 (MQ=255)
tCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGc > 2:7024019/1‑93 (MQ=255)
cagcagATGCGAGAATGCCGGAGCCTGACCGCAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTTGGGGTAGCTTGGTTAGTCTGGCGt > 1:5238964/1‑93 (MQ=255)
cagcagATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGt > 1:4669134/1‑93 (MQ=255)
cagcagATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGt > 2:3953888/1‑93 (MQ=255)
agcagATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGtt > 2:5726869/1‑93 (MQ=255)
gcagATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGttt > 1:3533291/1‑93 (MQ=255)
cagATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGtttt < 2:5573797/93‑1 (MQ=255)
agATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTg < 2:560696/93‑1 (MQ=255)
agATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTg > 2:3068697/1‑93 (MQ=255)
gATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGt > 2:2797710/1‑93 (MQ=255)
tGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTc > 2:6612716/1‑93 (MQ=255)
tGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTc > 2:2093449/1‑93 (MQ=255)
tGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTc < 2:1522779/93‑1 (MQ=255)
cGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCgg < 2:6641570/93‑1 (MQ=255)
cGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCgg < 2:4568109/93‑1 (MQ=255)
gagaATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCggg < 1:3967078/93‑1 (MQ=255)
agaATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCgggg < 1:3040961/93‑1 (MQ=255)
agaATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCgggg < 1:18202/93‑1 (MQ=255)
gaATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGga < 1:2262761/93‑1 (MQ=255)
gaATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGga > 2:6662527/1‑93 (MQ=255)
aTGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGgaga > 2:6161300/1‑93 (MQ=255)
aTGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGgaga < 2:7190375/93‑1 (MQ=255)
aTGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGgaga < 2:4915279/93‑1 (MQ=255)
tGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAgat > 1:5828939/1‑93 (MQ=255)
ggAGCCTGACCGAATTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGAtt < 1:4537392/93‑1 (MQ=255)
aGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTc < 2:2149215/93‑1 (MQ=255)
aGCCTGACCGAAGTTCCATCCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTc < 1:4046597/93‑1 (MQ=255)
gCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTcc > 1:1242568/1‑93 (MQ=255)
ccTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCg < 2:2968126/93‑1 (MQ=255)
cTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGc > 2:1646395/1‑93 (MQ=255)
cTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGc > 1:140772/1‑93 (MQ=255)
cTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGc > 1:3299555/1‑93 (MQ=255)
tGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCt > 1:4608174/1‑93 (MQ=255)
tGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCt > 2:4520373/1‑93 (MQ=255)
tGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCt > 2:6332869/1‑93 (MQ=255)
ccGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTcc > 2:5333715/1‑93 (MQ=255)
cGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCa > 1:6170532/1‑93 (MQ=255)
cGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCa < 2:3426978/93‑1 (MQ=255)
cGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCa < 2:3986645/93‑1 (MQ=255)
gAAGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCAc < 2:5024281/93‑1 (MQ=255)
aGTTCCATTCCCAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCAcgc < 1:1155444/93‑1 (MQ=255)
ttCCATTCCCAGCTACTCTGGCGGGCAAAGGTTTCGGCCAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACgcgc > 1:6584116/1‑93 (MQ=255)
ccAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATa > 1:892895/1‑93 (MQ=255)
cAGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATaa < 1:2059532/93‑1 (MQ=255)
aGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAAt < 2:5068041/93‑1 (MQ=255)
aGCCACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAAt > 1:838940/1‑93 (MQ=255)
cTACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATgg > 1:3377957/1‑93 (MQ=255)
tACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATggg > 1:2874829/1‑93 (MQ=255)
tACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATggg > 2:3262956/1‑93 (MQ=255)
|
ACGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAAGGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGGG > NC_000913/4620875‑4621058
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAACGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGGGC > NC_000913/4620873‑4621059
|
CAACGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCC < SRR4302542.1014801/94‑1 (MQ=60)
CAACGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCC > SRR4302542.5325852/1‑94 (MQ=60)
AACGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCA > SRR4302542.5325397/1‑94 (MQ=60)
AACGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCA > SRR4302542.700976/1‑94 (MQ=60)
AACGTCGAAATGCAATTCCACGCCCCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCA < SRR4302542.1991589/94‑1 (MQ=60)
CGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACT > SRR4302542.4235688/1‑94 (MQ=60)
CGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACT < SRR4302542.659066/94‑1 (MQ=60)
TCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCT < SRR4302542.5183423/94‑1 (MQ=60)
TCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCT < SRR4302542.7353420/94‑1 (MQ=60)
CGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTG > SRR4302542.2732515/1‑94 (MQ=60)
AAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGC < SRR4302542.7594656/94‑1 (MQ=60)
AAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGC > SRR4302542.377800/1‑94 (MQ=60)
AAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGC > SRR4302542.246133/1‑94 (MQ=60)
AATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCG > SRR4302542.5302001/1‑94 (MQ=60)
AATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCG > SRR4302542.239042/1‑94 (MQ=60)
ATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGG > SRR4302542.6406944/1‑94 (MQ=60)
ATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGG > SRR4302542.1729067/1‑94 (MQ=60)
ATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGG > SRR4302542.1367303/1‑94 (MQ=60)
TGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGG > SRR4302542.1656565/1‑94 (MQ=60)
TGCAGTCCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGG < SRR4302542.5344367/94‑1 (MQ=60)
AGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCGGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAA > SRR4302542.4712741/1‑94 (MQ=60)
TTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑G < SRR4302542.2897287/94‑1 (MQ=60)
TTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑G > SRR4302542.5567286/1‑94 (MQ=60)
TTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑G > SRR4302542.3666060/1‑94 (MQ=60)
TTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑G < SRR4302542.4957212/94‑1 (MQ=60)
CCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGT < SRR4302542.6884965/94‑1 (MQ=60)
CACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTT > SRR4302542.6902953/1‑94 (MQ=60)
CACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTT > SRR4302542.5382180/1‑94 (MQ=60)
CACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTT > SRR4302542.6338773/1‑94 (MQ=60)
CGCCGCCCCAGGTAAAGCGTTCATCCAGGAGAAGGGAGGATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCAATTTGGCGGGCAAAGGGTTT > SRR4302542.2373381/1‑94 (MQ=60)
CGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTC < SRR4302542.719626/94‑1 (MQ=60)
CGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTC < SRR4302542.5621855/94‑1 (MQ=60)
CGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGC > SRR4302542.1972234/1‑94 (MQ=60)
CGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGC < SRR4302542.3729342/94‑1 (MQ=60)
CCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAA > SRR4302542.1848424/1‑94 (MQ=60)
CCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAA > SRR4302542.4624898/1‑94 (MQ=60)
CCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAG < SRR4302542.6880749/94‑1 (MQ=60)
CCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAG > SRR4302542.7155224/1‑94 (MQ=60)
CAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGT > SRR4302542.175981/1‑94 (MQ=60)
AGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTT > SRR4302542.906410/1‑94 (MQ=60)
AGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTT < SRR4302542.4661619/94‑1 (MQ=60)
GGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTT < SRR4302542.5267228/94‑1 (MQ=60)
GGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTT > SRR4302542.2201726/1‑94 (MQ=60)
GGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTT > SRR4302542.6533960/1‑94 (MQ=60)
GTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTG > SRR4302542.1906059/1‑94 (MQ=60)
GTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTG < SRR4302542.5528144/94‑1 (MQ=60)
GTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTG < SRR4302542.6090835/94‑1 (MQ=60)
GTAAAGCGTCCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTG < SRR4302542.4262594/94‑1 (MQ=60)
TAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGG > SRR4302542.855487/1‑94 (MQ=60)
AAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGC < SRR4302542.732389/94‑1 (MQ=60)
AAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATCCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGC < SRR4302542.327826/94‑1 (MQ=60)
AAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCA < SRR4302542.7089746/94‑1 (MQ=60)
AAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCA < SRR4302542.2855159/94‑1 (MQ=60)
GCGTTCATCCAGCAGATGCGAGAAGGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAG < SRR4302542.7560118/94‑1 (MQ=60)
GCGTTCACCCAGCAGATGCGAGAAGGCCGGAGCCTGACCGAAGTTCCATCCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAG < SRR4302542.2719903/94‑1 (MQ=60)
TTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCT < SRR4302542.1768399/94‑1 (MQ=60)
TTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCT < SRR4302542.4049884/94‑1 (MQ=60)
CATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGG > SRR4302542.2863012/1‑94 (MQ=60)
AATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGG < SRR4302542.5179105/94‑1 (MQ=60)
ATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCGAGTCTGGC > SRR4302542.2243324/1‑94 (MQ=60)
ATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGC < SRR4302542.971547/94‑1 (MQ=60)
ATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGC < SRR4302542.3091198/94‑1 (MQ=60)
TCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCG > SRR4302542.5561262/1‑94 (MQ=60)
CCAGCAGATGCGAGAATGCCGGAGCCTGACCGCAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTtggggtagcttggttagtctggcgt > SRR4302542.5289900/1‑69 (MQ=60)
CCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGT > SRR4302542.4714774/1‑94 (MQ=60)
CCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGT < SRR4302542.1833004/94‑1 (MQ=60)
CCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGT > SRR4302542.1471594/1‑94 (MQ=60)
CAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTT > SRR4302542.4023601/1‑94 (MQ=60)
AGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTT > SRR4302542.5570865/1‑94 (MQ=60)
AGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTT > SRR4302542.3566313/1‑94 (MQ=60)
GCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTT < SRR4302542.5708781/94‑1 (MQ=60)
GCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTT > SRR4302542.7094677/1‑94 (MQ=60)
CAGATGCGAGAATGCCGGAGCCTGCCCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTG < SRR4302542.6383775/94‑1 (MQ=60)
AGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGT > SRR4302542.4651562/1‑94 (MQ=60)
GATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTT < SRR4302542.1278396/94‑1 (MQ=60)
GATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTT < SRR4302542.2576337/94‑1 (MQ=60)
GATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTT > SRR4302542.3500625/1‑94 (MQ=60)
ATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTC < SRR4302542.4134180/94‑1 (MQ=60)
TGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCG > SRR4302542.1557975/1‑94 (MQ=60)
TGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCG < SRR4302542.766960/94‑1 (MQ=60)
GCGAGAATCCGGGAGCCGGACCGAAGTTCCACTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGG < SRR4302542.6621265/94‑1 (MQ=60)
CGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGG > SRR4302542.1993885/1‑94 (MQ=60)
GAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGG < SRR4302542.4006243/94‑1 (MQ=60)
AGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGA < SRR4302542.18363/94‑1 (MQ=60)
AGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGA < SRR4302542.3070000/94‑1 (MQ=60)
GAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAG < SRR4302542.2282239/94‑1 (MQ=60)
AATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGA > SRR4302542.7160140/1‑94 (MQ=60)
ATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGAT > SRR4302542.5885512/1‑94 (MQ=60)
CGCCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATG > SRR4302542.4868984/1‑94 (MQ=60)
CCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGAT < SRR4302542.7061347/94‑1 (MQ=60)
CCGGAGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGAT > SRR4302542.4092941/1‑94 (MQ=60)
GGAGCCTGACCGAATTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTT < SRR4302542.4581824/94‑1 (MQ=60)
AGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCC < SRR4302542.2041919/94‑1 (MQ=60)
AGCCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCC > SRR4302542.1253245/1‑94 (MQ=60)
AGCCTGACCGAAGTTCCATCCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCC < SRR4302542.4086518/94‑1 (MQ=60)
CCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGC > SRR4302542.3330683/1‑94 (MQ=60)
CCTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGC > SRR4302542.141951/1‑94 (MQ=60)
CTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCT > SRR4302542.6131316/1‑94 (MQ=60)
CTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCT > SRR4302542.4653205/1‑94 (MQ=60)
CTGACCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCT > SRR4302542.5676243/1‑94 (MQ=60)
CCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCA < SRR4302542.4922605/94‑1 (MQ=60)
CCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCA < SRR4302542.939357/94‑1 (MQ=60)
CCGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCA > SRR4302542.6230321/1‑94 (MQ=60)
CGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCAC > SRR4302542.2964232/1‑94 (MQ=60)
CGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCAC < SRR4302542.6467125/94‑1 (MQ=60)
CGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCAC > SRR4302542.3396627/1‑94 (MQ=60)
CGAAGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCAC > SRR4302542.3396625/1‑94 (MQ=60)
AGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCG > SRR4302542.6763729/1‑94 (MQ=60)
AGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCG > SRR4302542.1168877/1‑94 (MQ=60)
AGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCG < SRR4302542.1165345/94‑1 (MQ=60)
AGTTCCATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCG < SRR4302542.5154793/94‑1 (MQ=60)
GTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCCAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGC > SRR4302542.6648985/1‑94 (MQ=60)
CATTCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGC > SRR4302542.277600/1‑94 (MQ=60)
CCCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCAT < SRR4302542.842852/94‑1 (MQ=60)
CCCAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATA > SRR4302542.900629/1‑94 (MQ=60)
CAGCCACTCTGGCGGGCCAA‑GGCTTCGGCGAAGTTTGGCAAGTCTTGCGGTTTGTTCGGGGAGATGATTTCCGCCTCCACGCGCTCGCCATAAT > SRR4302542.3996142/1‑94 (MQ=60)
CAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAAT < SRR4302542.2077330/94‑1 (MQ=60)
CAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAAT < SRR4302542.3438836/94‑1 (MQ=60)
CAGCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAAT > SRR4302542.846193/1‑94 (MQ=60)
GCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGG > SRR4302542.3409703/1‑94 (MQ=60)
GCCACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGG < SRR4302542.2993365/94‑1 (MQ=60)
CTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGGG > SRR4302542.2902432/1‑94 (MQ=60)
CAACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGGG < SRR4302542.3872398/94‑1 (MQ=60)
CACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGGGC < SRR4302542.3364106/94‑1 (MQ=60)
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CAACGTCGAAATGCAGTTCCACGCCGCCCCAGGTAAAGCGTTCATCCAGCAGATGCGAGAATGCCGGAGCCTGACCGAAGTTCCATTCCCAGCTACTCTGGCGGGCAAA‑GGTTTCGGCGAAGTTTGGCAAGTCTGGCGTTTTGTTCGGGGAGATGATTTCCGCTTCCACGCGCTCGCCATAATGGGC > NC_000913/4620873‑4621059
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
