Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑CAAGCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTAA  >  NC_000913/3222864‑3223041
                                                                                      |                                                                                             
ATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGC                                                                                      <  SRR4302542.7495830/94‑1 (MQ=60)
 TCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCC                                                                                     <  SRR4302542.4640573/94‑1 (MQ=60)
  CAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCA                                                                                    >  SRR4302542.6033961/1‑94 (MQ=60)
   NNGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCAT                                                                                   <  SRR4302542.1923743/94‑1 (MQ=60)
   AGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCAT                                                                                   <  SRR4302542.1977788/94‑1 (MQ=60)
   AGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCAT                                                                                   <  SRR4302542.4530867/94‑1 (MQ=60)
   AGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCAT                                                                                   <  SRR4302542.7227560/94‑1 (MQ=60)
   AGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCAT                                                                                   >  SRR4302542.5817306/1‑94 (MQ=60)
   AGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCAT                                                                                   <  SRR4302542.1486371/94‑1 (MQ=60)
     GTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGT                                                                                 >  SRR4302542.7179407/1‑94 (MQ=60)
      TGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTT                                                                                <  SRR4302542.6994973/94‑1 (MQ=60)
        GCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCG                                                                              <  SRR4302542.552184/94‑1 (MQ=60)
         CGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGA                                                                             >  SRR4302542.6417833/1‑94 (MQ=60)
          GTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAG                                                                            >  SRR4302542.920946/1‑94 (MQ=60)
          GTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAG                                                                            >  SRR4302542.5738761/1‑94 (MQ=60)
          GTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAG                                                                            <  SRR4302542.5977813/94‑1 (MQ=60)
          GTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAG                                                                            >  SRR4302542.1398746/1‑94 (MQ=60)
          GTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAG                                                                            <  SRR4302542.4085231/94‑1 (MQ=60)
           TATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGA                                                                           >  SRR4302542.6959918/1‑94 (MQ=60)
            ATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAA                                                                          <  SRR4302542.3821874/94‑1 (MQ=60)
            ATTACGGTCGCGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAA                                                                          >  SRR4302542.4688927/1‑94 (MQ=60)
             TTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAAC                                                                         >  SRR4302542.3940912/1‑94 (MQ=60)
             TTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAAC                                                                         >  SRR4302542.5395766/1‑94 (MQ=60)
              TACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACT                                                                        <  SRR4302542.425200/94‑1 (MQ=60)
              TACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACT                                                                        <  SRR4302542.4930551/94‑1 (MQ=60)
               ACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTA                                                                       >  SRR4302542.3391231/1‑94 (MQ=60)
                CGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTAT                                                                      <  SRR4302542.3755436/94‑1 (MQ=60)
                 GGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATC                                                                     <  SRR4302542.6418783/94‑1 (MQ=60)
                 GGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATC                                                                     <  SRR4302542.2068004/94‑1 (MQ=60)
                  GTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCC                                                                    >  SRR4302542.5521221/1‑94 (MQ=60)
                  GTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATACCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCC                                                                    >  SRR4302542.5721070/1‑94 (MQ=60)
                   TCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCC                                                                   <  SRR4302542.3777037/94‑1 (MQ=60)
                   TCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCC                                                                   <  SRR4302542.1091298/94‑1 (MQ=60)
                    CGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCT                                                                  >  SRR4302542.4375841/1‑94 (MQ=60)
                    CGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCT                                                                  <  SRR4302542.278635/94‑1 (MQ=60)
                    CGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCT                                                                  >  SRR4302542.6872152/1‑94 (MQ=60)
                     GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT                                                                 <  SRR4302542.2406277/94‑1 (MQ=60)
                     GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT                                                                 >  SRR4302542.1914997/1‑94 (MQ=60)
                     GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTT                                                                 <  SRR4302542.6005799/94‑1 (MQ=60)
                     GTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTA                                                                 <  SRR4302542.3872999/94‑1 (MQ=60)
                      TGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTC                                                                <  SRR4302542.4307240/94‑1 (MQ=60)
                        GACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCC                                                              <  SRR4302542.3290673/94‑1 (MQ=60)
                           CGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCA                                                           >  SRR4302542.1178566/1‑94 (MQ=60)
                            GGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAG                                                          >  SRR4302542.3653666/1‑94 (MQ=60)
                               CGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAAC                                                       >  SRR4302542.4434644/1‑94 (MQ=60)
                                GAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACA                                                      >  SRR4302542.789151/1‑94 (MQ=60)
                                GAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACA                                                      <  SRR4302542.5264140/94‑1 (MQ=60)
                                 AAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAA                                                     >  SRR4302542.2874461/1‑94 (MQ=60)
                                  AAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAAC                                                    <  SRR4302542.2491934/94‑1 (MQ=60)
                                  AAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAAC                                                    >  SRR4302542.4871803/1‑94 (MQ=60)
                                   AACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACG                                                   <  SRR4302542.2033885/94‑1 (MQ=60)
                                   AACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACG                                                   >  SRR4302542.3285290/1‑94 (MQ=60)
                                   AACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACG                                                   <  SRR4302542.5294877/94‑1 (MQ=60)
                                    ACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGG                                                  >  SRR4302542.1321263/1‑94 (MQ=60)
                                    ACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGG                                                  <  SRR4302542.4094291/94‑1 (MQ=60)
                                     CTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGT                                                 >  SRR4302542.2500985/1‑94 (MQ=60)
                                     CTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGT                                                 >  SRR4302542.4896534/1‑94 (MQ=60)
                                       ACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAA                                               <  SRR4302542.404148/94‑1 (MQ=60)
                                       ACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAA                                               <  SRR4302542.336843/94‑1 (MQ=60)
                                        CGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAAC                                              >  SRR4302542.5292377/1‑94 (MQ=60)
                                         GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC                                             <  SRR4302542.5210645/94‑1 (MQ=60)
                                         GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC                                             <  SRR4302542.448839/94‑1 (MQ=60)
                                         GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC                                             >  SRR4302542.945439/1‑94 (MQ=60)
                                         GCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACC                                             <  SRR4302542.3953350/94‑1 (MQ=60)
                                          CCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCG                                            <  SRR4302542.5511647/94‑1 (MQ=60)
                                           CGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGT                                           <  SRR4302542.136852/94‑1 (MQ=60)
                                           CGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGT                                           >  SRR4302542.5777839/1‑94 (MQ=60)
                                           CGACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGT                                           >  SRR4302542.1790219/1‑94 (MQ=60)
                                             ACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCA                                         <  SRR4302542.4313582/94‑1 (MQ=60)
                                             ACAGCCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCA                                         <  SRR4302542.6933509/94‑1 (MQ=60)
                                                 CCAGCAGGCTAACATCGTCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAT                                     <  SRR4302542.1648574/94‑1 (MQ=60)
                                                 CCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAT                                     <  SRR4302542.1006723/94‑1 (MQ=60)
                                                 CCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAT                                     >  SRR4302542.1896699/1‑94 (MQ=60)
                                                 CCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAT                                     >  SRR4302542.3932584/1‑94 (MQ=60)
                                                 CCAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCAT                                     <  SRR4302542.6063665/94‑1 (MQ=60)
                                                  CAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATG                                    <  SRR4302542.388279/94‑1 (MQ=60)
                                                  CAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATG                                    >  SRR4302542.3930082/1‑94 (MQ=60)
                                                  CAGCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATG                                    <  SRR4302542.552389/94‑1 (MQ=60)
                                                    GCAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTC                                  <  SRR4302542.5208706/94‑1 (MQ=60)
                                                     CAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCC                                 >  SRR4302542.4369506/1‑94 (MQ=60)
                                                     CAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCC                                 >  SRR4302542.5733275/1‑94 (MQ=60)
                                                     CAGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCC                                 >  SRR4302542.5245867/1‑94 (MQ=60)
                                                      AGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCG                                <  SRR4302542.7267992/94‑1 (MQ=60)
                                                      AGGCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCG                                >  SRR4302542.1941805/1‑94 (MQ=60)
                                                        GCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCT                              <  SRR4302542.5067878/94‑1 (MQ=60)
                                                        GCTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCT                              >  SRR4302542.614627/1‑94 (MQ=60)
                                                         CTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTG                             >  SRR4302542.6838190/1‑94 (MQ=60)
                                                         CTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTG                             <  SRR4302542.692119/94‑1 (MQ=60)
                                                         CTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTG                             <  SRR4302542.1552446/94‑1 (MQ=60)
                                                         CTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTG                             <  SRR4302542.6980474/94‑1 (MQ=60)
                                                         CTAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTG                             >  SRR4302542.878512/1‑94 (MQ=60)
                                                          TAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGG                            <  SRR4302542.5607272/94‑1 (MQ=60)
                                                          TAACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGG                            >  SRR4302542.1451946/1‑94 (MQ=60)
                                                           AACATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGA                           >  SRR4302542.3576786/1‑94 (MQ=60)
                                                             CATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACG                         <  SRR4302542.564363/94‑1 (MQ=60)
                                                             CATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACG                         <  SRR4302542.7153769/94‑1 (MQ=60)
                                                              ATCATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGG                        <  SRR4302542.1009639/94‑1 (MQ=60)
                                                                 ATCTATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCAC                     >  SRR4302542.444992/1‑94 (MQ=60)
                                                                 ATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCAC                     >  SRR4302542.5102080/1‑94 (MQ=60)
                                                                 ATCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCAC                     >  SRR4302542.2609631/1‑94 (MQ=60)
                                                                  TCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACT                    <  SRR4302542.1627531/94‑1 (MQ=60)
                                                                  TCGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACT                    <  SRR4302542.7021510/94‑1 (MQ=60)
                                                                   CGATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTG                   <  SRR4302542.1791761/94‑1 (MQ=60)
                                                                     ATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGAC                 >  SRR4302542.3630203/1‑94 (MQ=60)
                                                                     ATATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGAC                 >  SRR4302542.4432474/1‑94 (MQ=60)
                                                                      TATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGGCGGCACTGACT                <  SRR4302542.6213336/94‑1 (MQ=60)
                                                                      TATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT                >  SRR4302542.112706/1‑94 (MQ=60)
                                                                      TATCTGGCGCAGCA‑‑CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACT                <  SRR4302542.4474623/94‑1 (MQ=60)
                                                                         atctggcgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTA               >  SRR4302542.5620442/14‑94 (MQ=60)
                                                                           ctggcgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAAC             <  SRR4302542.3302931/83‑1 (MQ=60)
                                                                            tggcgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACC            <  SRR4302542.1325772/84‑1 (MQ=60)
                                                                             ggcgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCG           <  SRR4302542.4555734/85‑1 (MQ=60)
                                                                             ggcgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCG           <  SRR4302542.2150713/85‑1 (MQ=60)
                                                                               cgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCC         >  SRR4302542.1201285/8‑94 (MQ=60)
                                                                               cgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCC         >  SRR4302542.7535613/8‑94 (MQ=60)
                                                                               cgcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCC         <  SRR4302542.2827048/87‑1 (MQ=60)
                                                                                gcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCA        <  SRR4302542.1594773/88‑1 (MQ=60)
                                                                                gcagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCA        <  SRR4302542.1291480/88‑1 (MQ=60)
                                                                                 cagcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCAC       >  SRR4302542.5629137/6‑94 (MQ=60)
                                                                                  agcaCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACG      >  SRR4302542.4228165/5‑94 (MQ=60)
                                                                                    caCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGT    <  SRR4302542.6302017/92‑1 (MQ=60)
                                                                                     ACCGTCGATGCCATGTTCGAGGACTTTCCCTTCCCCCAGAACAACGGGAACCGTCAGCATGTCCGCTGGACGGCCCCGGCTAACCGCCACGGGA   >  SRR4302542.3672022/1‑94 (MQ=60)
                                                                                     ACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTA   <  SRR4302542.2265567/94‑1 (MQ=60)
                                                                                     ACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTA   >  SRR4302542.5503067/1‑94 (MQ=60)
                                                                                     ACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTA   <  SRR4302542.2751316/94‑1 (MQ=60)
                                                                                     ACCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTA   >  SRR4302542.6375760/1‑94 (MQ=60)
                                                                                      CCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTAA  >  SRR4302542.3423125/1‑94 (MQ=60)
                                                                                      |                                                                                             
ATCAGGTGGCGTATTACGGTCGTGGACCGGGCGAAAACTACGCCGACAGCCAGCAGGCTAACATCATCGATATCTGGCGC‑‑CAAGCCGTCGATGCCATGTTCGAGAACTATCCCTTCCCGCAGAACAACGGTAACCGTCAGCATGTCCGCTGGACGGCACTGACTAACCGCCACGGTAA  >  NC_000913/3222864‑3223041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑