Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC  >  NC_000913/3725654‑3725840
                                                                                               |                                                                                             
TAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCC                                                                                               >  SRR4302542.4358431/1‑94 (MQ=60)
   TTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGCA                                                                                            >  SRR4302542.4057297/1‑94 (MQ=60)
    TGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTA                                                                                            <  SRR4302542.7547478/94‑1 (MQ=60)
       GGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCcctacgg                                                                                        >  SRR4302542.5118049/1‑87 (MQ=60)
       GGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGT                                                                                        >  SRR4302542.1479348/1‑94 (MQ=60)
         CAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTA                                                                                       >  SRR4302542.3678172/1‑94 (MQ=60)
          AACAGTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACCGTAA                                                                                      >  SRR4302542.1874593/1‑94 (MQ=60)
          AACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAA                                                                                      >  SRR4302542.5738659/1‑94 (MQ=60)
          AACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCCTACGGTAA                                                                                      >  SRR4302542.4528458/1‑94 (MQ=60)
           ACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGCAAT                                                                                     >  SRR4302542.481376/1‑94 (MQ=60)
             AATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCCTACGGTAATCG                                                                                   >  SRR4302542.5923752/1‑94 (MQ=60)
             AATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGA                                                                                  <  SRR4302542.5482661/94‑1 (MQ=60)
              ATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCccccacgctatcgg                                                                                 >  SRR4302542.5102940/1‑80 (MQ=60)
               TTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCCTACGGTAATCCAG                                                                                 >  SRR4302542.6546692/1‑94 (MQ=60)
               TTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTACGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGGAATCGAG                                                                                 >  SRR4302542.1739595/1‑94 (MQ=60)
                TCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCT                                                                               <  SRR4302542.5696582/94‑1 (MQ=60)
                 CAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCT                                                                               >  SRR4302542.6993007/1‑94 (MQ=60)
                 CAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGCACGGTAATCGAGCT                                                                               >  SRR4302542.7002470/1‑94 (MQ=60)
                   ATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGC                                                                             >  SRR4302542.3517704/1‑94 (MQ=60)
                   ATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGC                                                                             >  SRR4302542.4465625/1‑94 (MQ=60)
                   ATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGC                                                                             >  SRR4302542.783397/1‑94 (MQ=60)
                    TGAGCGATTTCTCTGGATTCGCCGCGTTCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCT                                                                            >  SRR4302542.1952473/1‑94 (MQ=60)
                     GAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGGACGGTAATCGAGCTGCTGA                                                                          >  SRR4302542.2760282/1‑94 (MQ=60)
                       GCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGAC                                                                         <  SRR4302542.809007/94‑1 (MQ=60)
                        CGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATCCCCCCCCCCCTACGGTAATCGAGCTGCTGAC                                                                         >  SRR4302542.3428401/1‑94 (MQ=60)
                          ATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGC                                                                      <  SRR4302542.3308829/94‑1 (MQ=60)
                          ATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGGAATCGAGCTGCTGACCGC                                                                      >  SRR4302542.6658599/1‑94 (MQ=60)
                           TTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATCCCCCCCCCCG‑ACGGTAAACGAGCCGCTGACCGCT                                                                     >  SRR4302542.1362203/1‑94 (MQ=60)
                            TTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTG                                                                    >  SRR4302542.3896817/1‑94 (MQ=60)
                             TCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGA                                                                   >  SRR4302542.5712205/1‑94 (MQ=60)
                             TCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCCTACGGTAATCGAGCTGCTGACCGCTGA                                                                   >  SRR4302542.4413938/1‑94 (MQ=60)
                              CTNTNNANTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTNGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGAT                                                                  <  SRR4302542.6440242/94‑1 (MQ=60)
                              CTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGAT                                                                  <  SRR4302542.6876858/94‑1 (MQ=60)
                              CTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGAT                                                                  <  SRR4302542.4343615/94‑1 (MQ=60)
                              CTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGAT                                                                  <  SRR4302542.1693577/94‑1 (MQ=60)
                              CTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATA                                                                 >  SRR4302542.484074/1‑94 (MQ=60)
                               TCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATAT                                                                <  SRR4302542.6525421/94‑1 (MQ=60)
                               TCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATAT                                                                <  SRR4302542.2803354/94‑1 (MQ=60)
                                CTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTCACCGCTGATAT                                                                >  SRR4302542.5610575/1‑94 (MQ=60)
                                  GGATTCGCCTCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGTCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCC                                                              <  SRR4302542.6182960/94‑1 (MQ=60)
                                  GGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCC                                                              >  SRR4302542.5945978/1‑94 (MQ=60)
                                  GGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCC                                                              <  SRR4302542.652602/94‑1 (MQ=60)
                                  GGATTCGCCGCAATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGTCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCC                                                              <  SRR4302542.553310/94‑1 (MQ=60)
                                    ATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGC                                                            >  SRR4302542.2127894/1‑94 (MQ=60)
                                    ATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCCTACGGTAATCGAGCTGCCGACCCCTGATATCCGC                                                            >  SRR4302542.6294071/1‑94 (MQ=60)
                                     TTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCCTACGGTAATCGAGCTGCTGCCCGCCGATATCCGCC                                                           >  SRR4302542.6586136/1‑94 (MQ=60)
                                       CGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCccaacgggaatcgagctgcctacccccgggattcgccag                                                        >  SRR4302542.4108142/1‑55 (MQ=60)
                                       CGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCCGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCCCCAG                                                         >  SRR4302542.1583802/1‑94 (MQ=60)
                                        GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGC                                                        <  SRR4302542.6696018/94‑1 (MQ=60)
                                        GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCccgaccggaattcgggcggctgacccctgctaccccccgc                                                       >  SRR4302542.2672390/1‑54 (MQ=60)
                                         CCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCccgacggtaatcgagccgccgacccccgatttcccccacca                                                      >  SRR4302542.2945397/1‑53 (MQ=60)
                                          CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAT                                                      >  SRR4302542.484278/1‑94 (MQ=60)
                                          CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAT                                                      <  SRR4302542.3046366/94‑1 (MQ=60)
                                          CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAT                                                      >  SRR4302542.347612/1‑94 (MQ=60)
                                          CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGGAATCGAGCTGCTGACCGCTGATATCCGCCAGCAT                                                      >  SRR4302542.1555537/1‑94 (MQ=60)
                                          CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATC                                                     >  SRR4302542.4774256/1‑94 (MQ=60)
                                          CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATC                                                     >  SRR4302542.919403/1‑94 (MQ=60)
                                            CGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCT                                                    <  SRR4302542.4033135/94‑1 (MQ=60)
                                             GATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTG                                                   <  SRR4302542.3433551/94‑1 (MQ=60)
                                              ATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCCGACCGCTGATATCCGCCAGCATCTGCC                                                 >  SRR4302542.3835319/1‑94 (MQ=60)
                                               TCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGAC                                                 <  SRR4302542.6146910/94‑1 (MQ=60)
                                               TCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGAC                                                 <  SRR4302542.3574444/94‑1 (MQ=60)
                                               TCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGAC                                                 <  SRR4302542.2696648/94‑1 (MQ=60)
                                                    GCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAG                                            >  SRR4302542.927782/1‑94 (MQ=60)
                                                     CCAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGCACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGT                                           <  SRR4302542.6405253/94‑1 (MQ=60)
                                                      CAGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCCTACGGGAATCGAGCTGCTGACCGCTGATATCCGCCCGCATCTGACGCCCGTA                                          >  SRR4302542.2603222/1‑94 (MQ=60)
                                                       AGCCTTGCTGCGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTAC                                         >  SRR4302542.1014217/1‑94 (MQ=60)
                                                       AGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACT                                        >  SRR4302542.6720189/1‑94 (MQ=60)
                                                       AGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACT                                        >  SRR4302542.3632078/1‑94 (MQ=60)
                                                         CCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGGTATCCGCCAGCATCTGACGCCCGTACTCC                                      >  SRR4302542.5069656/1‑94 (MQ=60)
                                                         CCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCA                                      >  SRR4302542.2754354/1‑94 (MQ=60)
                                                           TTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACT                                    <  SRR4302542.6848235/94‑1 (MQ=60)
                                                                 CGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGGAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCG                               >  SRR4302542.5765542/1‑94 (MQ=60)
                                                                 CGCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGGAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCG                               >  SRR4302542.5439397/1‑94 (MQ=60)
                                                                  GCCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGC                              >  SRR4302542.6945355/1‑94 (MQ=60)
                                                                   CCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCCGCATCTGACGCCCGGACTCACTACGCGCC                             >  SRR4302542.5421485/1‑94 (MQ=60)
                                                                   CCCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCC                             <  SRR4302542.3362443/94‑1 (MQ=60)
                                                                   CCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCC                            >  SRR4302542.6290743/1‑94 (MQ=60)
                                                                    CCAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGATCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTAACTCCGCGCCC                            >  SRR4302542.7584298/1‑94 (MQ=60)
                                                                    CCAGTGCTGGCCCCACATC‑CCCCCCCCGGACGGTAATCGAGCTGCTGACCGCTGATATCCGCCCGCATCTGACGCCCGTACTCACTACGCGCCC                            >  SRR4302542.52988/1‑94 (MQ=60)
                                                                    CCAGTGCTGGCCCCACATC‑CCCCCCCCGCACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTTACGCCAGTACTCACCACGCCCCC                            >  SRR4302542.138418/1‑94 (MQ=60)
                                                                     CAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCC                           <  SRR4302542.585106/94‑1 (MQ=60)
                                                                     CAGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCC                           >  SRR4302542.4617282/1‑94 (MQ=60)
                                                                      AGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGTCCGCTGATATCCGCCAGCATCTCACGCCCGTACTCACTACGCGCCCCG                          >  SRR4302542.6901398/1‑94 (MQ=60)
                                                                      AGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG                          >  SRR4302542.2157682/1‑94 (MQ=60)
                                                                      AGTGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG                          >  SRR4302542.4767119/1‑94 (MQ=60)
                                                                        TGCTGGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCC                        <  SRR4302542.1600940/94‑1 (MQ=60)
                                                                          CTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCCCCCCC                     >  SRR4302542.4119775/1‑94 (MQ=60)
                                                                            GGCCCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCA                    <  SRR4302542.1431600/94‑1 (MQ=60)
                                                                               CCCACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATC                 <  SRR4302542.5930888/94‑1 (MQ=60)
                                                                               CCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCA                >  SRR4302542.2437467/1‑94 (MQ=60)
                                                                                cccccaccCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATC                 <  SRR4302542.3561480/86‑1 (MQ=60)
                                                                                 ccacaccCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCA                <  SRR4302542.3022268/87‑1 (MQ=60)
                                                                                 ccacaccCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCA                <  SRR4302542.2977858/87‑1 (MQ=60)
                                                                                 CACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAA               >  SRR4302542.7468252/1‑94 (MQ=60)
                                                                                 CACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAA               <  SRR4302542.3159079/94‑1 (MQ=60)
                                                                                  ACAC‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACG             <  SRR4302542.6587966/94‑1 (MQ=60)
                                                                                  ACAC‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACG             <  SRR4302542.6418281/94‑1 (MQ=60)
                                                                                   acaccCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAAC              <  SRR4302542.6562942/89‑1 (MQ=60)
                                                                                   acaccCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAAC              <  SRR4302542.2722340/89‑1 (MQ=60)
                                                                                     atcCCCCCCCCGTACGGTAATCGGGCCGCTGACCGCTCATATCCGCCAGCATCGGACGCCAGTAacccctaggtgccccgcccccgaccaacac            >  SRR4302542.7023867/4‑64 (MQ=54)
                                                                                     accCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGT            <  SRR4302542.6485851/91‑1 (MQ=60)
                                                                                     C‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAA          >  SRR4302542.6783385/1‑94 (MQ=60)
                                                                                     C‑‑CCCCCCCCGTACGGGAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTGCTCACTACGCGCCCCGCCCCCAATCAACGCAA          >  SRR4302542.984622/1‑94 (MQ=60)
                                                                                      tcCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTA           <  SRR4302542.7460718/92‑1 (MQ=60)
                                                                                        CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAAC         >  SRR4302542.4257584/1‑94 (MQ=60)
                                                                                        CCCCCCCCGTACGGTAATAGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAAC         <  SRR4302542.1170735/94‑1 (MQ=60)
                                                                                         CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA        <  SRR4302542.4643113/94‑1 (MQ=60)
                                                                                         CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA        <  SRR4302542.4370383/94‑1 (MQ=60)
                                                                                         CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA        <  SRR4302542.3899005/94‑1 (MQ=60)
                                                                                          CCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACAC       >  SRR4302542.1034448/1‑94 (MQ=60)
                                                                                           CCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACT      >  SRR4302542.6522497/1‑94 (MQ=60)
                                                                                             CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT    >  SRR4302542.5967521/1‑94 (MQ=60)
                                                                                              CCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG   <  SRR4302542.3724852/94‑1 (MQ=60)
                                                                                              CCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG   >  SRR4302542.260459/1‑94 (MQ=60)
                                                                                               CGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC  <  SRR4302542.4327605/94‑1 (MQ=60)
                                                                                               CGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC  >  SRR4302542.1479774/1‑94 (MQ=60)
                                                                                               CGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC  <  SRR4302542.1235669/94‑1 (MQ=60)
                                                                                               |                                                                                             
TAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC  >  NC_000913/3725654‑3725840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑