Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTG  >  NC_000913/3767178‑3767353
                                                                                            |                                                                                   
TACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTA                                                                                    <  SRR4302542.2855555/94‑1 (MQ=60)
TACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCA                                                                                    >  SRR4302542.3184072/1‑94 (MQ=60)
TACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCA                                                                                    <  SRR4302542.5917115/94‑1 (MQ=60)
TACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCA                                                                                    <  SRR4302542.2407742/94‑1 (MQ=60)
TACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCGAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCA                                                                                    <  SRR4302542.6273651/94‑1 (MQ=60)
 ACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAA                                                                                   <  SRR4302542.3414443/94‑1 (MQ=60)
 ACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAA                                                                                   <  SRR4302542.4579583/94‑1 (MQ=60)
  CATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAA                                                                                  <  SRR4302542.641113/94‑1 (MQ=60)
  CATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAA                                                                                  <  SRR4302542.1760651/94‑1 (MQ=60)
  CATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAA                                                                                  <  SRR4302542.1623407/94‑1 (MQ=60)
     GCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAA                                                                               <  SRR4302542.2667803/94‑1 (MQ=60)
     GCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAA                                                                               <  SRR4302542.2586993/94‑1 (MQ=60)
       TATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAA                                                                             <  SRR4302542.3022374/94‑1 (MQ=60)
        ATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAAT                                                                            <  SRR4302542.4860402/94‑1 (MQ=60)
        ATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAAT                                                                            <  SRR4302542.2616301/94‑1 (MQ=60)
        ATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAAT                                                                            <  SRR4302542.2395024/94‑1 (MQ=60)
         TTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATA                                                                           <  SRR4302542.2882324/94‑1 (MQ=60)
            ATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAA                                                                        <  SRR4302542.7002112/94‑1 (MQ=60)
             TTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAG                                                                       <  SRR4302542.332755/94‑1 (MQ=60)
             TTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAG                                                                       <  SRR4302542.4004109/94‑1 (MQ=60)
              TAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGA                                                                      <  SRR4302542.6118833/94‑1 (MQ=60)
              TAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGA                                                                      <  SRR4302542.4652128/94‑1 (MQ=60)
                AGTAAGGTAAAGATCATAAGACCATATCTGAAAGATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATA                                                                    <  SRR4302542.1102622/94‑1 (MQ=60)
                AGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATA                                                                    <  SRR4302542.5857096/94‑1 (MQ=60)
                AGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATA                                                                    <  SRR4302542.6323574/94‑1 (MQ=60)
                AGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATA                                                                    <  SRR4302542.251178/94‑1 (MQ=60)
                  TAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCCCTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAG                                                                  <  SRR4302542.6236273/94‑1 (MQ=60)
                  TAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAG                                                                  <  SRR4302542.3957400/94‑1 (MQ=60)
                  TAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAG                                                                  <  SRR4302542.3486712/94‑1 (MQ=60)
                    AGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAA                                                                <  SRR4302542.5785444/94‑1 (MQ=60)
                     GGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAAT                                                               <  SRR4302542.2366687/94‑1 (MQ=60)
                      GGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATA                                                              <  SRR4302542.3654287/94‑1 (MQ=60)
                         AAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAA                                                           <  SRR4302542.1492541/94‑1 (MQ=60)
                              CATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAAT                                                      <  SRR4302542.3026690/94‑1 (MQ=60)
                               ATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATC                                                     <  SRR4302542.4618709/94‑1 (MQ=60)
                                     CCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGAT                                               <  SRR4302542.802334/94‑1 (MQ=60)
                                               AAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAG                                     >  SRR4302542.5579349/1‑94 (MQ=60)
                                                    CTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAAT                                <  SRR4302542.1124950/94‑1 (MQ=60)
                                                     TAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATA                               <  SRR4302542.6558253/94‑1 (MQ=60)
                                                     TAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATA                               <  SRR4302542.5184366/94‑1 (MQ=60)
                                                         TCCACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTG                           <  SRR4302542.895761/94‑1 (MQ=60)
                                                            ACTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAG                        <  SRR4302542.4545001/94‑1 (MQ=60)
                                                             CTCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGT                       <  SRR4302542.5026363/94‑1 (MQ=60)
                                                              TCCAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTG                      <  SRR4302542.703257/94‑1 (MQ=60)
                                                                CAACTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGAT                    <  SRR4302542.7475723/94‑1 (MQ=60)
                                                                   CTTGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGAT                 <  SRR4302542.661551/94‑1 (MQ=60)
                                                                     TGCCGCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAA               >  SRR4302542.5493504/1‑94 (MQ=60)
                                                                         GCTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAAT           <  SRR4302542.2516439/94‑1 (MQ=60)
                                                                          CTGATTGCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATA          >  SRR4302542.620201/1‑94 (MQ=60)
                                                                                GCATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAAT    <  SRR4302542.4072546/94‑1 (MQ=60)
                                                                                  ATTGAAACAGCAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTG  <  SRR4302542.3977936/94‑1 (MQ=60)
                                                                                            |                                                                                   
TACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTG  >  NC_000913/3767178‑3767353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑