Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGGCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448449‑4448634
|
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGC > SRR4302542.6788598/1‑94 (MQ=60)
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGC > SRR4302542.3276105/1‑94 (MQ=60)
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcg > SRR4302542.4434792/1‑92 (MQ=60)
CCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgcc > SRR4302542.3223744/1‑90 (MQ=60)
CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccg > SRR4302542.2126345/1‑89 (MQ=60)
GCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgc > SRR4302542.5001654/1‑88 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgca > SRR4302542.6909976/1‑87 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgca > SRR4302542.6033456/1‑87 (MQ=60)
AAAAGAAGAATTAGAGAAGAAGAAAAATATTGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgcat < SRR4302542.1643938/94‑9 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgcatcc < SRR4302542.6664237/94‑11 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgcatcc < SRR4302542.4693426/94‑11 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGcgccgcatcc < SRR4302542.3313130/94‑11 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCG > SRR4302542.2440704/1‑94 (MQ=60)
GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGG > SRR4302542.5234928/1‑94 (MQ=60)
GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGG > SRR4302542.3322071/1‑94 (MQ=60)
AAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGC < SRR4302542.4338869/94‑1 (MQ=60)
AAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGC > SRR4302542.4391552/1‑94 (MQ=60)
AGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCG < SRR4302542.2005708/94‑1 (MQ=60)
GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGA > SRR4302542.6009909/1‑94 (MQ=60)
GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGA > SRR4302542.5677607/1‑94 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGAT > SRR4302542.4975953/1‑94 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGAT > SRR4302542.5257864/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATG > SRR4302542.6732617/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATG < SRR4302542.5399290/94‑1 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTG > SRR4302542.3971094/1‑94 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTG > SRR4302542.3463270/1‑94 (MQ=60)
GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGC < SRR4302542.291159/94‑1 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCA > SRR4302542.4528473/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCA < SRR4302542.7193806/94‑1 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCA > SRR4302542.3184382/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCA > SRR4302542.2551081/1‑94 (MQ=60)
GAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCAC > SRR4302542.4321642/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACT > SRR4302542.785267/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACT < SRR4302542.4051765/94‑1 (MQ=60)
AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTG > SRR4302542.2984139/1‑94 (MQ=60)
AAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAA > SRR4302542.2670944/1‑94 (MQ=60)
AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAG > SRR4302542.1838619/1‑94 (MQ=60)
AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAG > SRR4302542.5805019/1‑94 (MQ=60)
GAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGC > SRR4302542.4611323/1‑94 (MQ=60)
GAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGC > SRR4302542.4065608/1‑94 (MQ=60)
AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCC > SRR4302542.7310851/1‑94 (MQ=60)
AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCC < SRR4302542.4084683/94‑1 (MQ=60)
AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCC < SRR4302542.5777753/94‑1 (MQ=60)
AAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCT < SRR4302542.2006433/94‑1 (MQ=60)
AAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCT > SRR4302542.6509954/1‑94 (MQ=60)
AATATGGGGTATTGAGGTTTGCTATGCCTGATGCCGATTCGTGGGCGGGAAAGG‑‑G‑‑CCCT‑‑C‑GCGCCCCACCCGGCGATGGTGCACTGAAGCCTGA < SRR4302542.2544991/94‑1 (MQ=34)
AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGA < SRR4302542.2825998/94‑1 (MQ=60)
AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGA > SRR4302542.5189357/1‑94 (MQ=60)
AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGA > SRR4302542.5377111/1‑94 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGAT > SRR4302542.4131899/1‑94 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGAT < SRR4302542.1210348/94‑1 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGAT > SRR4302542.2637747/1‑94 (MQ=60)
TATGGGGTATTGGGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATG < SRR4302542.6537323/94‑1 (MQ=60)
TATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATG < SRR4302542.4440142/94‑1 (MQ=60)
ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGC > SRR4302542.7349173/1‑94 (MQ=60)
ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGC > SRR4302542.4600240/1‑94 (MQ=60)
ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGC > SRR4302542.6795162/1‑94 (MQ=60)
TGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCG > SRR4302542.660482/1‑94 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCCCCCG‑‑CGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGAC < SRR4302542.2968844/94‑1 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCaga > SRR4302542.3741692/1‑91 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGAC < SRR4302542.1148777/94‑1 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG < SRR4302542.2909352/94‑1 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG > SRR4302542.5678996/1‑94 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG > SRR4302542.6552998/1‑94 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG > SRR4302542.3610506/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.552218/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.7389422/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.6054261/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.1893322/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.7280869/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302542.5768915/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302542.2261301/1‑94 (MQ=60)
ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT < SRR4302542.7569997/94‑1 (MQ=60)
TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC > SRR4302542.1583641/1‑94 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC > SRR4302542.1702450/1‑94 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC < SRR4302542.2741431/94‑1 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC > SRR4302542.4717273/1‑94 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG < SRR4302542.7216763/94‑1 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG < SRR4302542.1196738/94‑1 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG > SRR4302542.3092630/1‑94 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG < SRR4302542.6630153/94‑1 (MQ=60)
GGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCG > SRR4302542.2154924/1‑94 (MQ=60)
GGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCG > SRR4302542.4434096/1‑94 (MQ=60)
GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGG > SRR4302542.5904165/1‑94 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT > SRR4302542.5427437/1‑94 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT < SRR4302542.5774909/94‑1 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT > SRR4302542.87445/1‑94 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT < SRR4302542.3212976/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302542.7164395/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302542.2961007/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302542.3461697/94‑1 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA < SRR4302542.471876/94‑1 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCCCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA > SRR4302542.5135613/1‑94 (MQ=60)
TGCCTGATGCCGATTCGTAGGCCGGATAAGCCG‑‑CCCC‑‑CGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA < SRR4302542.4099587/94‑1 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG < SRR4302542.6629306/94‑1 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302542.6507330/1‑94 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302542.3638513/1‑94 (MQ=60)
CTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCCCTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC < SRR4302542.7520049/94‑1 (MQ=60)
CTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC > SRR4302542.1841663/1‑94 (MQ=60)
CTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC > SRR4302542.3970719/1‑94 (MQ=60)
GATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT > SRR4302542.2870943/1‑94 (MQ=60)
GATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT < SRR4302542.3964988/94‑1 (MQ=60)
ATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA > SRR4302542.1121997/1‑94 (MQ=60)
ATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA > SRR4302542.5426061/1‑94 (MQ=60)
GCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACT < SRR4302542.1248354/94‑1 (MQ=60)
CCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG > SRR4302542.2708474/1‑94 (MQ=60)
CCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG > SRR4302542.5788065/1‑94 (MQ=60)
GATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG > SRR4302542.2095319/1‑94 (MQ=60)
GATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG < SRR4302542.3546562/94‑1 (MQ=60)
GATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG > SRR4302542.5802526/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302542.583832/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302542.3677113/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302542.132648/1‑94 (MQ=60)
TTCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG < SRR4302542.2762909/94‑1 (MQ=60)
TTCGGAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG < SRR4302542.2613077/94‑1 (MQ=60)
TCGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGC < SRR4302542.7598885/94‑1 (MQ=60)
CGTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA > SRR4302542.384172/1‑94 (MQ=60)
GTGGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC < SRR4302542.3937999/94‑1 (MQ=60)
GTAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC < SRR4302542.3222798/94‑1 (MQ=60)
TAGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACG > SRR4302542.639247/1‑94 (MQ=60)
AGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGC < SRR4302542.7301724/94‑1 (MQ=60)
AGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGC < SRR4302542.4875366/94‑1 (MQ=60)
AGGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGC > SRR4302542.6116069/1‑94 (MQ=60)
GGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCT > SRR4302542.4623995/1‑94 (MQ=60)
GGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCT < SRR4302542.5804082/94‑1 (MQ=60)
GGCCGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCT < SRR4302542.1502714/94‑1 (MQ=60)
CGGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA > SRR4302542.4123934/1‑94 (MQ=60)
GGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > SRR4302542.4744192/1‑94 (MQ=60)
GGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > SRR4302542.2505403/1‑94 (MQ=60)
GGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC < SRR4302542.713505/94‑1 (MQ=60)
GGATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC < SRR4302542.3521146/94‑1 (MQ=60)
ATAAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAC < SRR4302542.489359/94‑1 (MQ=60)
AAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACTG > SRR4302542.5119039/1‑94 (MQ=60)
AAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG < SRR4302542.2701367/94‑1 (MQ=60)
AAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG < SRR4302542.5750377/94‑1 (MQ=60)
AAG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > SRR4302542.1146987/1‑94 (MQ=60)
AG‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG < SRR4302542.5365483/94‑1 (MQ=60)
G‑‑G‑‑CGCTCGCGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG < SRR4302542.672412/94‑1 (MQ=60)
CGCCG‑‑‑CATCTGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA > SRR4302542.3582370/1‑94 (MQ=60)
CGCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA > SRR4302542.5190817/1‑94 (MQ=60)
GCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > SRR4302542.3289326/1‑94 (MQ=60)
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ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑G‑‑CGCT‑‑CGGCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448449‑4448634
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
