Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
245 |
579.6 |
28867798 |
97.7% |
28203838 |
96.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,448,543 |
+C |
intergenic (+48/‑90) |
ytfQ → / → ytfR |
putative LACI‑type transcriptional regulator/YtfR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,448,542 | 1 | . | C | 99.5%
| 1194.1
/ ‑1.8
| 375 | intergenic (+47/‑91) | ytfQ/ytfR | putative LACI‑type transcriptional regulator/YtfR |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (238/135); total (238/137) |
| Fisher's exact test for biased strand distribution p-value = 1.33e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 407 total aligned reads displayed.
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCG‑G‑C‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGG > NC_000913/4448448‑4448626
|
agaagaATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGc < 1:10373893/96‑1 (MQ=37)
gaagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCg > 2:10976692/1‑96 (MQ=37)
agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGAt < 2:1535269/96‑1 (MQ=37)
gaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATg > 1:4457167/1‑96 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATgg > 1:5180943/1‑96 (MQ=37)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGt > 2:6086855/1‑96 (MQ=37)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGt < 1:2845435/96‑1 (MQ=37)
tAGAGAAGAAGAAAAATATGGGGGATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATTAGGCGCTCGCGCC‑GCATCCGGCGATGGTGc > 2:14096211/1‑96 (MQ=37)
agagAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCa > 2:2421225/1‑96 (MQ=37)
gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCAc > 2:8716196/1‑96 (MQ=37)
gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCAc > 2:6739885/1‑96 (MQ=37)
agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGTGCTCGCGCC‑GCATCCGGCGATGGTGCACt > 2:13380408/1‑96 (MQ=37)
agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACt > 1:7214433/1‑96 (MQ=37)
agaagaaaaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGTTTCGTAGGCGGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACt < 2:4799152/96‑1 (MQ=25)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGaa < 1:13698316/96‑1 (MQ=37)
aaaagaaAAATATGGGGTATTGAGGGGTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGGGCACTGaa > 1:3321984/3‑96 (MQ=25)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAg > 2:7169253/1‑96 (MQ=37)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAg > 1:4244071/1‑96 (MQ=37)
agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGcc > 1:5657322/1‑96 (MQ=37)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCt > 1:7846926/1‑96 (MQ=37)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCt > 2:4527662/1‑96 (MQ=37)
aaaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTg < 2:102023/96‑1 (MQ=37)
aaaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTg > 1:8358629/1‑96 (MQ=37)
aaaaaTATGGGGTATTGAGGGGTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTg > 1:8533225/1‑96 (MQ=37)
aaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGa > 1:5399685/1‑96 (MQ=37)
aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATg > 2:9606454/1‑96 (MQ=37)
aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATg < 2:3893294/96‑1 (MQ=37)
aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATg > 1:6267467/1‑96 (MQ=37)
aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATg > 1:4143701/1‑96 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGc > 2:2751125/1‑96 (MQ=25)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGGGATGGTGCACTGAAGCCTGATGCGa > 2:5434970/1‑96 (MQ=37)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGa > 1:8019245/1‑96 (MQ=37)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc > 2:4406107/1‑96 (MQ=37)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc < 1:1182945/96‑1 (MQ=25)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc < 1:12592413/96‑1 (MQ=25)
ggggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg < 2:5223060/96‑1 (MQ=37)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCGTGATGCGACGc > 1:6434437/1‑96 (MQ=25)
ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt < 2:12142551/96‑1 (MQ=37)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 2:8112384/1‑96 (MQ=25)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 1:11544585/1‑96 (MQ=25)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 2:11858917/1‑96 (MQ=25)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 2:2889333/1‑96 (MQ=25)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 1:10559070/1‑96 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 1:14374015/96‑1 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 2:9200239/96‑1 (MQ=25)
aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc > 1:3105611/1‑96 (MQ=25)
aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCAATGAAGGCTGAGGGGGCGCttcc > 2:13127718/1‑94 (MQ=21)
aTTGAGGGTTGCTATGCCTGATGCCGACTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc > 2:13807198/1‑96 (MQ=25)
ttGAGGGTTGCTATCCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCG‑CTGCATCCGGCGATGGTGCACTGAAGCCTGCTGCGACGCTTAcc < 1:10977503/96‑1 (MQ=25)
aGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg > 1:3787738/1‑96 (MQ=25)
ggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTc > 2:8237996/1‑96 (MQ=25)
tccTATGCCGGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa < 2:7620489/94‑1 (MQ=21)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCtag < 1:11282654/96‑3 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa < 2:11489060/96‑1 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa > 1:1081677/1‑96 (MQ=25)
tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa > 1:2150727/1‑96 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGTTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAt > 2:10525492/1‑96 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAt > 1:9198704/1‑96 (MQ=25)
cTACGCCTGATGCCGTTTCGTGGCAAGGAAAAGGAGCTCGCGCC‑GCCTCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc < 1:9930854/96‑1 (MQ=16)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa > 2:7995167/1‑96 (MQ=21)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa < 2:78505/96‑1 (MQ=25)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa > 2:8896112/1‑96 (MQ=25)
aTGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt > 1:11986936/1‑96 (MQ=25)
aTGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt > 2:6358596/1‑96 (MQ=21)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg < 2:5987691/96‑1 (MQ=25)
gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:7126514/1‑96 (MQ=21)
gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 1:1656867/1‑96 (MQ=21)
gCCTGATGCCGATTCGGAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 1:1427883/1‑96 (MQ=21)
cTGGTGCCGATCCGGAGGCCGAACAAGGCGCCCGCGCC‑GCATCTGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCt < 2:2582573/96‑1 (MQ=18)
cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCt < 1:6739101/96‑1 (MQ=21)
cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCt > 2:11323206/1‑96 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCACTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa > 2:11428579/1‑96 (MQ=21)
gATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAc > 2:12929941/1‑96 (MQ=21)
aTGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACt < 2:1714853/96‑1 (MQ=21)
tGCCGGTTCGTGGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg < 2:6847211/96‑1 (MQ=18)
tGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg < 1:10721224/96‑1 (MQ=21)
tGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg < 2:4237426/96‑1 (MQ=21)
tGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg > 2:5018301/1‑96 (MQ=21)
ccGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTggg > 1:5563509/1‑96 (MQ=21)
cGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTTGGa > 1:707968/1‑96 (MQ=18)
cGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 1:381911/1‑96 (MQ=21)
cGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 2:3454781/1‑96 (MQ=21)
cGATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCCTACCGCGTCTTATCATGCCTACTGGGa < 2:12699421/96‑1 (MQ=21)
agATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 1:8842766/2‑96 (MQ=21)
gATTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAg > 2:3630563/1‑96 (MQ=21)
aTTCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc < 2:1982017/96‑1 (MQ=21)
ttCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa > 1:10086971/1‑96 (MQ=21)
tCGTAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAc < 1:7644825/96‑1 (MQ=21)
cGTAGGCCTGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCatg > 1:12960715/1‑94 (MQ=18)
tAGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCt > 1:9453601/1‑96 (MQ=21)
aGGCCGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCtt < 1:1863202/96‑1 (MQ=21)
ccGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac > 2:2132711/1‑96 (MQ=21)
cGGATAAGGCGCTCGCGCC‑GCTCCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTaca < 2:12401358/96‑1 (MQ=21)
cGGATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacc > 1:13217566/1‑95 (MQ=21)
ggATAAGGCGCTCGCGCC‑GCATCCGTCGATGGTGCACTGAAGCCTGATGCGAGGCTTACCGCGTCTTATCATGCCGACTGGGAGCTCTCTTTacag > 1:6118565/1‑95 (MQ=21)
gATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc < 2:10797089/96‑1 (MQ=25)
gATAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc > 2:851164/1‑96 (MQ=25)
tAAGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgg > 2:5498007/1‑96 (MQ=25)
aaGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCggg > 1:364335/1‑96 (MQ=25)
aGGCGCTCGCGCC‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg > 1:11751248/1‑96 (MQ=25)
|
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCG‑G‑C‑GCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGG > NC_000913/4448448‑4448626
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
