Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTT  >  NC_000913/4603571‑4603751
                                                                                                 |                                                                                        
GGCATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGG                                                                                         >  SRR4302542.5679881/1‑94 (MQ=60)
 GCATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGga                                                                                        <  SRR4302542.6868457/94‑3 (MQ=60)
 GCATAATGCTAATTATAATAAATTTAAATCAGGGAAAAAAAAAAAAAGAAGAAAAAAAAAAGGAAGAAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGgg                                                                                        <  SRR4302542.2806061/94‑3 (MQ=16)
   ATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGggac                                                                                      >  SRR4302542.1008445/1‑90 (MQ=60)
    TCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTG                                                                                     >  SRR4302542.7033934/1‑94 (MQ=60)
      ATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTG                                                                                     <  SRR4302542.6235572/94‑1 (MQ=60)
      ATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGggcttta                                                                                   >  SRR4302542.7015935/1‑87 (MQ=60)
       TGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAAC                                                                                  >  SRR4302542.3853810/1‑94 (MQ=60)
        GCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAA                                                                                   >  SRR4302542.2672477/1‑94 (MQ=60)
          TGATGATAATGAATTTGAATAAGGGATGAAAAATCAAGGAAAAAAAAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACC                                                                                 <  SRR4302542.4229735/94‑1 (MQ=60)
            ATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCC                                                                               >  SRR4302542.3119742/1‑94 (MQ=60)
            ATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCA                                                                             >  SRR4302542.5393290/1‑94 (MQ=60)
             TGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCC                                                                              >  SRR4302542.3958196/1‑94 (MQ=60)
             TGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAG‑‑GGGGGGGGACTTGAACCCCCA                                                                             >  SRR4302542.5979158/1‑94 (MQ=60)
               ATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCAC                                                                            <  SRR4302542.1082292/94‑1 (MQ=60)
               ATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGT                                                                          >  SRR4302542.1761749/1‑94 (MQ=60)
               ATAATGAATTTGAATCAGGGAAGAAAAATCAAGGAAAAAAAAAGAAAGGAAGTAAAGATAATTGGGGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCAC                                                                            <  SRR4302542.1925449/94‑1 (MQ=60)
               AAAATGAATTTGAATCAGGGATGAAAAATCAAGGAAAAAACAAGAAAGGAAGTAAAGATAATTGGGGCGGGG‑‑‑GGGGGGGGACTTGAACCCCCAC                                                                            <  SRR4302542.1105431/94‑1 (MQ=60)
                AAATGAATTTGAATCAGGGATGAAAAATAAAGGAAAAAAAAAGAAAGGAAGAAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACG                                                                           <  SRR4302542.369163/94‑1 (MQ=60)
                     AATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGGGGGGGGGGGACTTGAACCCCCACGTCCG                                                                       >  SRR4302542.1529455/1‑94 (MQ=60)
                     AATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGT                                                                      <  SRR4302542.911615/94‑1 (MQ=60)
                        TTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGCCTTGAACCCCCACGTCCGTAAG                                                                   >  SRR4302542.4856075/1‑94 (MQ=60)
                          GAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGACCCCCCACGTCCGTAAGGACA                                                               <  SRR4302542.4214348/94‑1 (MQ=60)
                           AATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGAC                                                                >  SRR4302542.3632415/1‑94 (MQ=60)
                           AATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGTGGGGACTTGAATCCCCACGTCCGTAGGGACAC                                                              >  SRR4302542.3242749/1‑94 (MQ=60)
                            ATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGGGGGGGGGGGACTTGAACCCCCACGTCCGTAAGGAC                                                                >  SRR4302542.2061124/1‑94 (MQ=60)
                             TCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACAC                                                              <  SRR4302542.1141233/94‑1 (MQ=60)
                             TCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGggctttaaacccccccgcccgtagggaacc                                                            >  SRR4302542.4027725/1‑64 (MQ=60)
                              CAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGGGGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACAC                                                              >  SRR4302542.1891971/1‑94 (MQ=60)
                               AGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTA                                                            >  SRR4302542.2377055/1‑94 (MQ=60)
                               AGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTA                                                            >  SRR4302542.3435133/1‑94 (MQ=60)
                               AGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTA                                                            >  SRR4302542.1389716/1‑94 (MQ=60)
                                 gaaaaaaaaaaaaagaaaaaaaaaaaAAAGGAAGAAAAAATAATTGGGGC‑‑GAGG‑GGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAAC                                                          <  SRR4302542.4136264/68‑1 (MQ=1)
                                 GGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAAC                                                          <  SRR4302542.1003021/94‑1 (MQ=60)
                                   ATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACAC                                                        >  SRR4302542.2156868/1‑94 (MQ=60)
                                    gaaaaaaaaaaaaagaaaaaaaaaaaaaagaaaaaaaaaaaattggggggggggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAAC                                                          <  SRR4302542.234708/40‑1 (MQ=0)
                                    TGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAG‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCT                                                      <  SRR4302542.5019851/94‑1 (MQ=60)
                                     GAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCT                                                      >  SRR4302542.5974573/1‑94 (MQ=60)
                                     GAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGgggtttgaacccccccggccgtaagggaatcgacacct                                                    >  SRR4302542.3853266/1‑56 (MQ=60)
                                     AAAAAAACAAGGAAGAAACAAGAAAGGAAGAAAAAAAAATTGGGGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCT                                                      <  SRR4302542.667893/94‑1 (MQ=27)
                                        AAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAG‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAG                                                  >  SRR4302542.846435/1‑94 (MQ=60)
                                        AAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAG‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAG                                                  >  SRR4302542.929601/1‑94 (MQ=60)
                                        AAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGC                                                 >  SRR4302542.5467148/1‑94 (MQ=60)
                                         AATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCGCCACGTCCGTAAGGACACTAACACCTGAAG                                                  >  SRR4302542.2978270/1‑94 (MQ=60)
                                         AATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAG                                                  >  SRR4302542.2212493/1‑94 (MQ=60)
                                         AATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAG‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGC                                                 >  SRR4302542.5812354/1‑94 (MQ=60)
                                           TAAAGGAAGAAAAAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAG                                              <  SRR4302542.3044140/94‑1 (MQ=60)
                                            CAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTA                                               >  SRR4302542.6805488/1‑94 (MQ=60)
                                            CAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTAAACCCCCACGTCCGTAAGGACCCTAACCCCTGAAGCTA                                               >  SRR4302542.4301455/1‑94 (MQ=60)
                                            CAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAG‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAG                                              >  SRR4302542.3607572/1‑94 (MQ=60)
                                             AAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAG                                              >  SRR4302542.6282522/1‑94 (MQ=60)
                                             AAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAG                                              >  SRR4302542.4838953/1‑94 (MQ=60)
                                             AAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAG                                              >  SRR4302542.5806924/1‑94 (MQ=60)
                                              AGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGC                                             >  SRR4302542.6771276/1‑94 (MQ=60)
                                              AGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGC                                             >  SRR4302542.3080903/1‑94 (MQ=60)
                                               GGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGAAACTAACACCTGAAGCTAGCG                                            >  SRR4302542.2525223/1‑94 (MQ=60)
                                               GGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCG                                            <  SRR4302542.4704956/94‑1 (MQ=60)
                                               GGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCG                                            >  SRR4302542.687492/1‑94 (MQ=60)
                                                GAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGC                                           >  SRR4302542.4914168/1‑94 (MQ=60)
                                                GAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGC                                           >  SRR4302542.5706449/1‑94 (MQ=60)
                                                GAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGT                                         <  SRR4302542.683451/94‑1 (MQ=60)
                                                GAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGT                                         >  SRR4302542.1098772/1‑94 (MQ=60)
                                                 ttttaattttttatttaaatttttaaaggtcgtggggcgagGGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGC                                             <  SRR4302542.6409569/53‑1 (MQ=0)
                                                 AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCG                                          >  SRR4302542.686791/1‑94 (MQ=60)
                                                 AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCG                                          >  SRR4302542.2166781/1‑94 (MQ=60)
                                                  AGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGT                                         >  SRR4302542.5414216/1‑94 (MQ=60)
                                                  AGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAG‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTC                                        >  SRR4302542.3566847/1‑94 (MQ=60)
                                                   aaaaaaaaaaaaaagaaagaaaagaaattggggggggggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGC                                           <  SRR4302542.831675/55‑1 (MQ=0)
                                                   GAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACCCCTGAAGCTAGCGCCTC                                        >  SRR4302542.2963960/1‑94 (MQ=54)
                                                   GAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTC                                        >  SRR4302542.6976426/1‑94 (MQ=60)
                                                    AAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTAC                                     >  SRR4302542.4434455/1‑94 (MQ=60)
                                                     AACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGGGTCTA                                      >  SRR4302542.444498/1‑94 (MQ=53)
                                                     AACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTA                                      <  SRR4302542.4688342/94‑1 (MQ=55)
                                                      ACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTAC                                     >  SRR4302542.145876/1‑94 (MQ=51)
                                                        tttttatttcattttttaaaagtggtggtgggggGGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTA                                      <  SRR4302542.6402955/60‑1 (MQ=0)
                                                        AAGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCA                                   >  SRR4302542.214025/1‑94 (MQ=48)
                                                        AAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAT                                 >  SRR4302542.834474/1‑94 (MQ=52)
                                                         AGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAA                                  >  SRR4302542.6226873/1‑94 (MQ=44)
                                                         AGAAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAA                                  >  SRR4302542.5254898/1‑94 (MQ=46)
                                                         AGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATT                                >  SRR4302542.2010403/1‑94 (MQ=50)
                                                           AAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATT                                >  SRR4302542.7543759/1‑94 (MQ=41)
                                                           AAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATT                                >  SRR4302542.3166972/1‑94 (MQ=41)
                                                           AAAGGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATT                                >  SRR4302542.7591776/1‑94 (MQ=41)
                                                            aaaaaggaagaaaagaaaatgggtggggggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAA                                  <  SRR4302542.7151564/64‑1 (MQ=0)
                                                             AGGAAGTAAAGATAATTGGTGC‑‑GAGGGGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTC                               >  SRR4302542.4290405/1‑94 (MQ=36)
                                                             AGGAAGAAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCC                              <  SRR4302542.1757925/94‑1 (MQ=23)
                                                              GGAAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGCCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCG                             >  SRR4302542.4109101/1‑94 (MQ=32)
                                                                AAGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCC                           >  SRR4302542.2411302/1‑94 (MQ=29)
                                                                AAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGCCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAC                         >  SRR4302542.3628131/1‑94 (MQ=30)
                                                                 AGTAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCA                          >  SRR4302542.4852417/1‑94 (MQ=26)
                                                                   agaaaaaaaaattggggggggggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCC                           <  SRR4302542.3132413/71‑1 (MQ=0)
                                                                   TAAAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACC                        >  SRR4302542.5507602/1‑94 (MQ=22)
                                                                     AAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT                      >  SRR4302542.3437001/1‑94 (MQ=14)
                                                                     AAGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT                      >  SRR4302542.3245273/1‑94 (MQ=14)
                                                                      AGATAATTGGTGC‑‑GAGG‑GGGGGGGGGCTTGAACCCCCACCTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTC                     >  SRR4302542.3566721/1‑94 (MQ=8)
                                                                      AGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTC                     >  SRR4302542.5734390/1‑94 (MQ=9)
                                                                      AGATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTC                     >  SRR4302542.236956/1‑94 (MQ=9)
                                                                       GATAATTGGGGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCG                    <  SRR4302542.7065402/94‑1 (MQ=0)
                                                                        ATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGC                   >  SRR4302542.386825/1‑94 (MQ=5)
                                                                        ATAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGGCCGTAAGGACACTAAAACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGC                   >  SRR4302542.6024306/1‑94 (MQ=4)
                                                                         taaagtgggggggcgggGGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTC                     <  SRR4302542.6620055/77‑1 (MQ=0)
                                                                         TAATTGGTGC‑‑GAGGGGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGC                   >  SRR4302542.7211694/1‑94 (MQ=2)
                                                                         TAATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCA                  >  SRR4302542.3610849/1‑94 (MQ=2)
                                                                         TAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACA                >  SRR4302542.2692456/1‑94 (MQ=8)
                                                                           ATTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCA                >  SRR4302542.4222153/1‑94 (MQ=0)
                                                                            TTGGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAG               <  SRR4302542.6212157/94‑1 (MQ=2)
                                                                              GGTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTC             <  SRR4302542.5015753/94‑1 (MQ=7)
                                                                               tgggtgtggggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAG               <  SRR4302542.653427/83‑1 (MQ=3)
                                                                               tggggggggggGGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAG               <  SRR4302542.2994216/83‑1 (MQ=3)
                                                                               aatggggggggGGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAG               <  SRR4302542.47877/83‑1 (MQ=3)
                                                                               GTGC‑‑GAGG‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCA            >  SRR4302542.1654459/1‑94 (MQ=10)
                                                                                 gggggggggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTC             <  SRR4302542.6977701/85‑1 (MQ=9)
                                                                                  ggggggggGGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCA            <  SRR4302542.1540428/86‑1 (MQ=11)
                                                                                   gtgggagGGGGGGGGACTTGAACCCCCACGTCCGGAAGGGCACTAACCCCTGAAGCTAGCGCGTTTTCCAATTCCGCCCCCTTCaggtgttaag           <  SRR4302542.6259428/87‑11 (MQ=0)
                                                                                    ggcaggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATC          <  SRR4302542.3748062/88‑1 (MQ=22)
                                                                                     cgaggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCT         >  SRR4302542.2821980/6‑94 (MQ=24)
                                                                                      ggggGGGGGGGGACTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTT        <  SRR4302542.356592/90‑1 (MQ=26)
                                                                                      G‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACT     >  SRR4302542.4640291/1‑94 (MQ=34)
                                                                                       gggGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTA       <  SRR4302542.1555174/91‑1 (MQ=29)
                                                                                          GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTT    <  SRR4302542.499127/94‑1 (MQ=37)
                                                                                          GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTT    >  SRR4302542.4963452/1‑94 (MQ=37)
                                                                                          GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTT    >  SRR4302542.6902872/1‑94 (MQ=37)
                                                                                           GGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTT   >  SRR4302542.2233859/1‑94 (MQ=39)
                                                                                           GGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTT   <  SRR4302542.6059222/94‑1 (MQ=39)
                                                                                            GGGGGGCCTTCACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTT  <  SRR4302542.2505883/94‑1 (MQ=38)
                                                                                                 |                                                                                        
GGCATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGC‑‑GA‑‑‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTT  >  NC_000913/4603571‑4603751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑