Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	245	579.6	28867798	97.7%	28203838	96.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,544,170	T→C	I502I (ATT→ATC)	fimD →	FimD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,544,170	0	T	C	99.4%	2777.8 / NA	702	I502I (ATT→ATC)	fimD	FimD
Reads supporting (aligned to +/- strand): ref base T (0/4); new base C (374/323); total (375/327)
Fisher's exact test for biased strand distribution p-value = 4.69e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 716 total aligned reads displayed.

GCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATTGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGT  >  NC_000913/4544076‑4544262

gCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATTg                                                                                             <  1:9369960/96‑1 (MQ=255)

 cACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGa                                                                                            <  1:8522655/96‑1 (MQ=255)

  aCGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGaa                                                                                           >  2:9703796/1‑96 (MQ=255)

   cGAATATTCAGTTAGTGTGTTACCGTTATTCGACCAGCGGATATTTTAATTTAGCTGATACAACATACCGTCGAATGAATGGCTACAACATCGaaa                                                                                          <  1:6747495/96‑1 (MQ=255)

    gAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAac                                                                                         >  2:2050235/1‑96 (MQ=255)

     aaTATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAaca                                                                                        >  1:9643528/1‑96 (MQ=255)

      atatTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAacac                                                                                       <  1:7954960/96‑1 (MQ=255)

       tatTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAAcaca                                                                                      <  2:7462609/96‑1 (MQ=255)

         ttCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAgg                                                                                    <  2:3665536/96‑1 (MQ=255)

         ttCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAgg                                                                                    >  1:12392340/1‑96 (MQ=255)

         ttCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAgg                                                                                    >  2:8350072/1‑96 (MQ=255)

           cAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAggtc                                                                                  >  2:14018042/1‑94 (MQ=255)

           cAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGAc                                                                                  >  2:6127150/1‑96 (MQ=255)

            aGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACg                                                                                 >  1:6475029/1‑96 (MQ=255)

             gTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACgg                                                                                <  2:13869981/96‑1 (MQ=255)

                aGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGt                                                                             >  1:7574519/1‑96 (MQ=255)

                aGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGt                                                                             >  1:10456660/1‑96 (MQ=255)

                  tGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTa                                                                           >  2:4104251/1‑96 (MQ=255)

                  tGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGGTa                                                                           >  2:6502991/1‑96 (MQ=255)

                     gTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTc                                                                        <  1:8876835/96‑1 (MQ=255)

                       tACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACCCAGGACGGAGTTATTCAg                                                                      <  1:2050235/96‑1 (MQ=255)

                       tACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAg                                                                      <  2:10241152/96‑1 (MQ=255)

                        aCCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAgg                                                                     <  2:11005334/96‑1 (MQ=255)

                         ccGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAAAACAGGACGGATTTATTCAGGt                                                                    >  1:5000180/1‑96 (MQ=255)

                          cGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGtt                                                                   <  1:7283690/96‑1 (MQ=255)

                           gTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTa                                                                  >  1:1013556/1‑96 (MQ=255)

                             tATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAg                                                                >  1:4036345/1‑96 (MQ=255)

                              aTTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTaacc                                                               <  1:14232689/96‑3 (MQ=255)

                              aTTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGc                                                               <  1:3238741/96‑1 (MQ=255)

                               ttCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGcc                                                              <  2:11506246/96‑1 (MQ=255)

                                tCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCg                                                             >  2:12085419/1‑96 (MQ=255)

                                  gACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTGTTCAGGTTAAGCCGaa                                                           >  1:12818908/1‑96 (MQ=255)

                                  gACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGaa                                                           >  2:9044484/1‑96 (MQ=255)

                                  gACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGATATTCAGGTTAAGCCGaa                                                           >  1:13128325/1‑96 (MQ=255)

                                   aCCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGaaa                                                          >  1:3588969/1‑96 (MQ=255)

                                   aCCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGaaa                                                          <  1:7155030/96‑1 (MQ=255)

                                    ccAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAAt                                                         >  2:13569129/1‑96 (MQ=255)

                                     cAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAAtt                                                        >  2:7948977/1‑96 (MQ=255)

                                     cAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAAtt                                                        >  1:3777860/1‑96 (MQ=255)

                                     cAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGGTAAGCCGAAAtt                                                        >  2:7059716/1‑96 (MQ=255)

                                       gCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCa                                                      >  1:1355096/1‑96 (MQ=255)

                                         ggATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAATTTCAcc                                                    >  1:3022845/1‑96 (MQ=255)

                                         ggATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCAcc                                                    >  1:2506669/1‑96 (MQ=255)

                                         ggATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCAcc                                                    >  2:12242052/1‑96 (MQ=255)

                                         ggATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCAcc                                                    >  2:11728174/1‑96 (MQ=255)

                                          gATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCg                                                   >  2:5916683/1‑96 (MQ=255)

                                          gATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCg                                                   >  2:4808316/1‑96 (MQ=255)

                                          gATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCg                                                   >  1:579510/1‑96 (MQ=255)

                                           atatTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGa                                                  >  2:1717025/1‑96 (MQ=255)

                                           atatTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGa                                                  >  2:13333547/1‑96 (MQ=255)

                                           atatTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGa                                                  <  1:14433024/96‑1 (MQ=255)

                                           atatTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGa                                                  <  1:823271/96‑1 (MQ=255)

                                            tatTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGAc                                                 >  2:4703341/1‑96 (MQ=255)

                                              ttttAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTa                                               <  1:6061207/96‑1 (MQ=255)

                                               tttAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGGGTTATTCAGGTTAAGCCGAAATTCACCGACTAt                                              >  2:10537228/1‑96 (MQ=255)

                                               tttAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTAt                                              >  1:5415705/1‑96 (MQ=255)

                                               tttAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACAGACTAt                                              >  1:11657326/1‑96 (MQ=255)

                                                ttAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTAtt                                             <  2:5333309/96‑1 (MQ=255)

                                                 tAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTa                                            >  2:2497020/1‑96 (MQ=255)

                                                  aaTTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTAc                                           <  1:12112337/96‑1 (MQ=255)

                                                   aTTTCGCTGATACAACATCCAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACa                                          >  1:12624278/1‑96 (MQ=255)

                                                   aTTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACa                                          <  1:4220277/96‑1 (MQ=255)

                                                      tCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAAcc                                       <  1:10040110/96‑1 (MQ=255)

                                                      tCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAAcc                                       >  2:12901858/1‑96 (MQ=255)

                                                      tCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTAACCGACTATTACAAcc                                       >  2:14321777/1‑96 (MQ=255)

                                                       cGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCt                                      >  2:5126523/1‑96 (MQ=255)

                                                        gCTGATACAACATGCAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTc                                     >  1:11413054/1‑96 (MQ=255)

                                                        gCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTc                                     <  1:2339378/96‑1 (MQ=255)

                                                        gCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTc                                     <  1:4790509/96‑1 (MQ=255)

                                                         cagATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCg                                    >  1:561141/3‑96 (MQ=255)

                                                         cTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCg                                    <  1:4557984/96‑1 (MQ=255)

                                                          tGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGc                                   >  2:2722540/1‑96 (MQ=255)

                                                           gATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCt                                  <  2:14168007/96‑1 (MQ=255)

                                                              acaacaTACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTtat                               >  2:9577650/1‑96 (MQ=255)

                                                                aacaTACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATaa                             >  1:1655140/1‑96 (MQ=255)

                                                                aacaTACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATaa                             >  1:10764681/1‑96 (MQ=255)

                                                                aacaTACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATaa                             >  2:4456174/1‑96 (MQ=255)

                                                                   aTACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACaa                          <  1:11023855/96‑1 (MQ=255)

                                                                   aTACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACaa                          >  1:9777680/1‑96 (MQ=255)

                                                                     aCAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAAc                        <  1:9129248/96‑1 (MQ=255)

                                                                      cAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAAcg                       <  2:3492940/96‑1 (MQ=255)

                                                                      cAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAAcg                       >  2:12489209/1‑96 (MQ=255)

                                                                        gTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAAcgcg                     <  2:2857324/96‑1 (MQ=255)

                                                                         tCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCgg                    <  2:10774369/96‑1 (MQ=255)

                                                                           gaatgaatGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGa                  >  1:9922105/1‑96 (MQ=255)

                                                                           gaatgaatGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGa                  >  1:13911934/1‑96 (MQ=255)

                                                                             atgaatgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGaaa                <  1:11902784/96‑1 (MQ=255)

                                                                              tgaatgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAAt               >  2:5513129/1‑96 (MQ=255)

                                                                              tgaatgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAAt               >  2:6818411/1‑96 (MQ=255)

                                                                               gaatgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAAtt              >  2:7641388/1‑96 (MQ=255)

                                                                                aatgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTa             >  1:2625735/1‑96 (MQ=255)

                                                                                 atgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTAc            >  1:6289625/1‑96 (MQ=255)

                                                                                 atgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTAc            >  2:9420083/1‑96 (MQ=255)

                                                                                 atgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTAc            >  2:8723361/1‑96 (MQ=255)

                                                                                 atgGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTAc            >  2:773761/1‑96 (MQ=255)

                                                                                   ggCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACaa          >  1:13285774/1‑96 (MQ=255)

                                                                                      tACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTc       >  2:3081940/1‑96 (MQ=255)

                                                                                        caacaTCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCAc     <  1:7848782/96‑1 (MQ=255)

                                                                                          acaTCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCg   >  2:7266902/1‑96 (MQ=255)

                                                                                          acaTCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCg   >  2:322014/1‑96 (MQ=255)

GCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATTGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGT  >  NC_000913/4544076‑4544262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 411 total aligned reads displayed.

AATCAGGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATTGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGC  >  NC_000913/4544070‑4544270

AATCAGGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATC                                                                                                      >  SRR4302518.1604956/1‑101 (MQ=60)

  TCAGGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATNNN                                                                                                    >  SRR4302518.12694515/1‑101 (MQ=60)

  TCAGGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATNNN                                                                                                    >  SRR4302518.10521744/1‑101 (MQ=60)

  NNNGGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGA                                                                                                    <  SRR4302518.8938606/101‑1 (MQ=60)

    NNNCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAA                                                                                                  <  SRR4302518.7694989/101‑1 (MQ=60)

    AGGCAGGAATATTCAGTTATGGGGTTACCGTTATTAGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAA                                                                                                  <  SRR4302518.6793636/101‑1 (MQ=60)

     GGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAAC                                                                                                 >  SRR4302518.2788383/1‑101 (MQ=60)

     GGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAAC                                                                                                 >  SRR4302518.792457/1‑101 (MQ=60)

      NNNCGAGTATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACA                                                                                                <  SRR4302518.13486457/101‑1 (MQ=60)

       NNNGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACAC                                                                                               <  SRR4302518.8277146/101‑1 (MQ=60)

       CACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACAC                                                                                               >  SRR4302518.14447/1‑101 (MQ=60)

       CACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACAC                                                                                               >  SRR4302518.5780972/1‑101 (MQ=60)

        ACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACA                                                                                              >  SRR4302518.6215777/1‑101 (MQ=60)

        ACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACA                                                                                              <  SRR4302518.2640461/101‑1 (MQ=60)

        ACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACA                                                                                              >  SRR4302518.6676731/1‑101 (MQ=60)

         NNNATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAG                                                                                             <  SRR4302518.8547414/101‑1 (MQ=60)

          GCATATTTAGTTAGTGGGTTTCCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATCCAGTCGAATGAATGGCTACAACATCGAAACACAGG                                                                                            <  SRR4302518.6750991/101‑1 (MQ=60)

          GAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGG                                                                                            >  SRR4302518.6471563/1‑101 (MQ=60)

          GAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGG                                                                                            <  SRR4302518.1813107/101‑1 (MQ=60)

           AATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACANNN                                                                                           >  SRR4302518.10108553/1‑101 (MQ=60)

           AATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGA                                                                                           >  SRR4302518.3968224/1‑101 (MQ=60)

            ATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGAC                                                                                          <  SRR4302518.296088/101‑1 (MQ=60)

             NNNTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACG                                                                                         <  SRR4302518.9584759/101‑1 (MQ=60)

              NNNCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGG                                                                                        <  SRR4302518.14707107/101‑1 (MQ=60)

               TTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACNNN                                                                                       >  SRR4302518.7619152/1‑101 (MQ=60)

               TTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACNNN                                                                                       >  SRR4302518.12976590/1‑101 (MQ=60)

               TTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGA                                                                                       <  SRR4302518.3268908/101‑1 (MQ=60)

                TCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGNNN                                                                                      >  SRR4302518.8576785/1‑101 (MQ=60)

                 NNNTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGT                                                                                     <  SRR4302518.10351336/101‑1 (MQ=60)

                      NNNGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTC                                                                                <  SRR4302518.15004198/101‑1 (MQ=60)

                      AGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTC                                                                                <  SRR4302518.2724743/101‑1 (MQ=60)

                      AGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTC                                                                                <  SRR4302518.4930219/101‑1 (MQ=60)

                      AGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCCAAACACAGGACGGAGgtannn                                                                                >  SRR4302518.10823853/1‑95 (MQ=60)

                       GTGTGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCA                                                                               <  SRR4302518.6812775/101‑1 (MQ=60)

                        TGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACCCAGGACGGAGTTATTCAG                                                                              <  SRR4302518.2145138/101‑1 (MQ=60)

                        TGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAG                                                                              <  SRR4302518.4192146/101‑1 (MQ=60)

                        GGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAG                                                                              <  SRR4302518.6510551/101‑1 (MQ=60)

                           GTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTT                                                                           <  SRR4302518.7107229/101‑1 (MQ=60)

                             NNNCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAA                                                                         <  SRR4302518.14626035/101‑1 (MQ=60)

                             NNNCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATACAGGTTAA                                                                         <  SRR4302518.13578453/101‑1 (MQ=60)

                              NNNGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAG                                                                        <  SRR4302518.13257955/101‑1 (MQ=60)

                               NNNTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGC                                                                       <  SRR4302518.14855736/101‑1 (MQ=60)

                               CCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGC                                                                       <  SRR4302518.3389271/101‑1 (MQ=60)

                               CCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAAAACAGGACGGATTTATTCAGGTTAAGC                                                                       >  SRR4302518.5259823/1‑101 (MQ=60)

                                 gatacTCGACCAGCTGATATTTTAATTGCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCG                                                                     <  SRR4302518.541907/96‑1 (MQ=60)

                                 GTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCG                                                                     >  SRR4302518.1053387/1‑101 (MQ=60)

                                  TTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCNNN                                                                    >  SRR4302518.7440983/1‑101 (MQ=60)

                                   TCTTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAA                                                                   <  SRR4302518.1731192/101‑1 (MQ=60)

                                   TATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAA                                                                   <  SRR4302518.4057305/101‑1 (MQ=60)

                                   TATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCAAA                                                                   >  SRR4302518.4230596/1‑101 (MQ=60)

                                    NNNCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAA                                                                  <  SRR4302518.7531184/101‑1 (MQ=60)

                                    ATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGNNN                                                                  >  SRR4302518.8679157/1‑101 (MQ=60)

                                     TTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGANNN                                                                 >  SRR4302518.8391016/1‑101 (MQ=60)

                                      TCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATT                                                                <  SRR4302518.6073432/101‑1 (MQ=60)

                                      TCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATT                                                                >  SRR4302518.3827413/1‑101 (MQ=60)

                                       CGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTC                                                               >  SRR4302518.1517582/1‑101 (MQ=60)

                                       CGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTC                                                               >  SRR4302518.2851743/1‑101 (MQ=60)

                                        GACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATNNN                                                              >  SRR4302518.12785484/1‑101 (MQ=60)

                                        GACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAAAATCGAAACACAAGAAGGAGATAGTCAGGTTAAACCGAAATTAA                                                              >  SRR4302518.2296162/1‑101 (MQ=60)

                                         NNNAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCtg                                                             <  SRR4302518.12247663/101‑3 (MQ=60)

                                         ACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTNNN                                                             >  SRR4302518.9569772/1‑101 (MQ=60)

                                         ACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCAC                                                             >  SRR4302518.3757082/1‑101 (MQ=60)

                                          NNNGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCAGC                                                            <  SRR4302518.12324916/101‑1 (MQ=60)

                                          CCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACC                                                            <  SRR4302518.1553629/101‑1 (MQ=60)

                                           NNNCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCG                                                           <  SRR4302518.10661370/101‑1 (MQ=60)

                                           NNNCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCG                                                           <  SRR4302518.11261751/101‑1 (MQ=60)

                                            AGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGA                                                          >  SRR4302518.510543/1‑101 (MQ=60)

                                             GCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGAC                                                         >  SRR4302518.1411261/1‑101 (MQ=60)

                                              NNNATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACT                                                        <  SRR4302518.13761660/101‑1 (MQ=60)

                                              CGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGNNN                                                        >  SRR4302518.15097129/1‑101 (MQ=60)

                                              CGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACT                                                        <  SRR4302518.4858119/101‑1 (MQ=60)

                                              CGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACAACGAAACACAGGCCGGAGTTATTCAGGTTAAGCCGAAATTCACCGACT                                                        <  SRR4302518.3325445/101‑1 (MQ=60)

                                               GGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGANNN                                                       >  SRR4302518.8232039/1‑101 (MQ=60)

                                                GATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTAT                                                      >  SRR4302518.601959/1‑101 (MQ=60)

                                                 ATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATT                                                     >  SRR4302518.978201/1‑101 (MQ=60)

                                                  TATTTTAATTTCGCTGATACAACATACAGTCGAATGACTGGCTACAACATCGAAGCCCATGACGGAGTTATTCAGGTTAAGCCGAAATACACCGCCAATTA                                                    >  SRR4302518.6350426/1‑101 (MQ=60)

                                                   NNNTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACgataga                                                   <  SRR4302518.13355884/101‑7 (MQ=60)

                                                    TTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACA                                                  <  SRR4302518.6175119/101‑1 (MQ=60)

                                                    TTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACA                                                  <  SRR4302518.4426809/101‑1 (MQ=60)

                                                    NNNTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTAACCGACTATTACA                                                  <  SRR4302518.11923001/101‑1 (MQ=60)

                                                     TTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTANNN                                                 >  SRR4302518.13375449/1‑101 (MQ=60)

                                                     TTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACAGACTATTANNN                                                 >  SRR4302518.12206126/1‑101 (MQ=60)

                                                      NNNATTTCGCTGATACAACATACAGTCGCATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAAC                                                <  SRR4302518.10569442/101‑1 (MQ=60)

                                                       TAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACANNN                                               >  SRR4302518.10236828/1‑101 (MQ=60)

                                                       TAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACC                                               <  SRR4302518.5670451/101‑1 (MQ=60)

                                                       TAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACC                                               >  SRR4302518.2689418/1‑101 (MQ=60)

                                                        NNNTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACAT                                              <  SRR4302518.14950591/101‑1 (MQ=60)

                                                        AATTTCGCTGATATAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGGGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAANNN                                              >  SRR4302518.11478793/1‑101 (MQ=60)

                                                        AATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTGAGCCGAAATTCACCGACTATTACAANNN                                              >  SRR4302518.13064040/1‑101 (MQ=60)

                                                        AATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAANNN                                              >  SRR4302518.13032786/1‑101 (MQ=60)

                                                        AATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAANNN                                              >  SRR4302518.9683787/1‑101 (MQ=60)

                                                        AATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCT                                              >  SRR4302518.3043749/1‑101 (MQ=60)

                                                        AATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCT                                              <  SRR4302518.2673793/101‑1 (MQ=60)

                                                         NNNTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTC                                             <  SRR4302518.10005149/101‑1 (MQ=60)

                                                         ATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACNNN                                             >  SRR4302518.12510966/1‑101 (MQ=60)

                                                         ATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTC                                             <  SRR4302518.4560635/101‑1 (MQ=60)

                                                         ATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTC                                             <  SRR4302518.5041398/101‑1 (MQ=60)

                                                         ATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTC                                             <  SRR4302518.1727333/101‑1 (MQ=60)

                                                          TTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCG                                            <  SRR4302518.9389/101‑1 (MQ=60)

                                                          TTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCG                                            <  SRR4302518.4797636/101‑1 (MQ=60)

                                                           TTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGC                                           >  SRR4302518.5843749/1‑101 (MQ=60)

                                                           TTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGC                                           <  SRR4302518.5127811/101‑1 (MQ=60)

                                                            TCGCGGATACAACATACAGTCGAATGAATGGCTACAACAGCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCNNN                                          >  SRR4302518.13204982/1‑101 (MQ=60)

                                                            NNNCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCT                                          <  SRR4302518.9813971/101‑1 (MQ=60)

                                                             CGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGNNN                                         >  SRR4302518.13828300/1‑101 (MQ=60)

                                                             CGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTT                                         >  SRR4302518.3637023/1‑101 (MQ=60)

                                                              GCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTA                                        >  SRR4302518.6206439/1‑101 (MQ=60)

                                                              GCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCNNN                                        >  SRR4302518.11718523/1‑101 (MQ=60)

                                                               CTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGATGGAGATATTTAGGTTAAaccgatcttcacctactaataacacctccgctaa                                       >  SRR4302518.7034084/1‑67 (MQ=60)

                                                               CTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTAT                                       >  SRR4302518.5635058/1‑101 (MQ=60)

                                                               CTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTAT                                       <  SRR4302518.6926430/101‑1 (MQ=60)

                                                               CTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTAT                                       <  SRR4302518.4712457/101‑1 (MQ=60)

                                                               CTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTAT                                       <  SRR4302518.1503577/101‑1 (MQ=60)

                                                               CTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTAT                                       <  SRR4302518.4377448/101‑1 (MQ=60)

                                                                TGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATA                                      >  SRR4302518.5699529/1‑101 (MQ=60)

                                                                 GATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAA                                     <  SRR4302518.359058/101‑1 (MQ=60)

                                                                  NNNCAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAAC                                    <  SRR4302518.9006128/101‑1 (MQ=60)

                                                                  NNNCAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAAC                                    <  SRR4302518.10169430/101‑1 (MQ=60)

                                                                  ATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATNNN                                    >  SRR4302518.10935693/1‑101 (MQ=60)

                                                                  ATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAAC                                    >  SRR4302518.2552394/1‑101 (MQ=60)

                                                                  ATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAAC                                    <  SRR4302518.704988/101‑1 (MQ=60)

                                                                  ATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAAA                                    >  SRR4302518.7083019/1‑101 (MQ=60)

                                                                  ATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGGTATTCAGGTTAAGCCGAAATTCACCGCCTATTACAACTTCGCTTATNNN                                    >  SRR4302518.10424049/1‑101 (MQ=60)

                                                                  AAACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATNNN                                    >  SRR4302518.11102772/1‑101 (MQ=60)

                                                                   TACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATANNN                                   >  SRR4302518.7588350/1‑101 (MQ=60)

                                                                   NNNAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACA                                   <  SRR4302518.10220110/101‑1 (MQ=60)

                                                                    NNNACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAA                                  <  SRR4302518.8633535/101‑1 (MQ=60)

                                                                    NNNACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAA                                  <  SRR4302518.11539838/101‑1 (MQ=60)

                                                                    ACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAA                                  >  SRR4302518.538244/1‑101 (MQ=60)

                                                                    ACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAA                                  <  SRR4302518.3869260/101‑1 (MQ=60)

                                                                     CAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACNNN                                 >  SRR4302518.12160071/1‑101 (MQ=60)

                                                                     CAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAA                                 <  SRR4302518.2489060/101‑1 (MQ=60)

                                                                      NNNATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAAGAAAC                                <  SRR4302518.10318251/101‑1 (MQ=60)

                                                                      NNNATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAAC                                <  SRR4302518.12577439/101‑1 (MQ=60)

                                                                      NNNATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAAC                                <  SRR4302518.8767142/101‑1 (MQ=60)

                                                                      AACCTACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGTCTATTACAACCTCGCTTATAACAAAC                                <  SRR4302518.4301788/101‑1 (MQ=60)

                                                                      AACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACANNN                                >  SRR4302518.9344866/1‑101 (MQ=60)

                                                                      AACATACAGTCGAAGGAATGTCTACAACATCGAAACACATGACGGAGTTATTTTGATTAAACCGAAATTCACCGACTATTAatacaacgcatataacannn                                >  SRR4302518.13684146/1‑81 (MQ=39)

                                                                       ACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAANNN                               >  SRR4302518.8321431/1‑101 (MQ=60)

                                                                       ACATACAGTCGAATGAATCGCTACAACATCGAAACACAGTACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAANNN                               >  SRR4302518.10614258/1‑101 (MQ=60)

                                                                        NNNACATTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGC                              <  SRR4302518.11617939/101‑1 (MQ=60)

                                                                        CATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGGGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGG                              >  SRR4302518.4826737/1‑101 (MQ=60)

                                                                         NNNCAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCG                             <  SRR4302518.9147980/101‑1 (MQ=60)

                                                                         ATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACNNN                             >  SRR4302518.10190327/1‑101 (MQ=60)

                                                                         ATACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTAATTCAGGTTAAGCCGAAATTAACCGACTATTAAAAACTCGCTTATAACAAACNNN                             >  SRR4302518.12810099/1‑101 (MQ=60)

                                                                          TACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGG                            <  SRR4302518.7021387/101‑1 (MQ=60)

                                                                          NNNAGTCTAATGAATGGCTACAACATCGAAACACATGACTGAGTTATTCAGGTTAATCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGG                            <  SRR4302518.8331215/101‑1 (MQ=60)

                                                                          NNNAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCAG                            <  SRR4302518.12004948/101‑1 (MQ=60)

                                                                           ACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCNNN                           >  SRR4302518.7886058/1‑101 (MQ=60)

                                                                           ACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCNNN                           >  SRR4302518.14194343/1‑101 (MQ=60)

                                                                           ACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCNNN                           >  SRR4302518.11394440/1‑101 (MQ=60)

                                                                           ACAGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGG                           <  SRR4302518.2192896/101‑1 (MQ=60)

                                                                            NNNTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGA                          <  SRR4302518.14151335/101‑1 (MQ=60)

                                                                            NNNTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGA                          <  SRR4302518.7646723/101‑1 (MQ=60)

                                                                             cgtctaaataatgtCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAATCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAA                         <  SRR4302518.7287738/87‑1 (MQ=60)

                                                                             AGTCGAATGAATGTCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGNNN                         >  SRR4302518.14504276/1‑101 (MQ=60)

                                                                             AGTCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAA                         <  SRR4302518.6785721/101‑1 (MQ=60)

                                                                              NNNGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAA                        <  SRR4302518.12469513/101‑1 (MQ=60)

                                                                               TCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGANNN                       >  SRR4302518.7997633/1‑101 (MQ=60)

                                                                               TCGAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAAT                       <  SRR4302518.2617356/101‑1 (MQ=60)

                                                                               NNNAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAAT                       <  SRR4302518.12075960/101‑1 (MQ=60)

                                                                                 NNNTGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTA                     <  SRR4302518.12184948/101‑1 (MQ=60)

                                                                                 GAATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACATCCTCGCTTATAACAAACGCGGGAAANNN                     >  SRR4302518.10595228/1‑101 (MQ=60)

                                                                                  AATGAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATNNN                    >  SRR4302518.8775082/1‑101 (MQ=60)

                                                                                     GAATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACNNN                 >  SRR4302518.10027784/1‑101 (MQ=60)

                                                                                      AATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACANNN                >  SRR4302518.13735580/1‑101 (MQ=60)

                                                                                       TTGGCTACAACATAGGAACACAGGACGGAGTTATTCAGGTTAAGCCGATATTCACCGACTATGTCAACGTCGTTTGTAACAACCGCGGGGAATTACAANNN               >  SRR4302518.14489827/1‑101 (MQ=45)

                                                                                       NNNGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTG               <  SRR4302518.11839355/101‑1 (MQ=60)

                                                                                       NNNGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTC               <  SRR4302518.12484290/101‑1 (MQ=60)

                                                                                       ATGGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTC               >  SRR4302518.6610205/1‑101 (MQ=60)

                                                                                        NNNCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCA              <  SRR4302518.9402226/101‑1 (MQ=60)

                                                                                         NNNTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGCAATTACAACTCAC             <  SRR4302518.14075044/101‑1 (MQ=60)

                                                                                         NNNTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCAC             <  SRR4302518.8243621/101‑1 (MQ=60)

                                                                                         GGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTNNN             >  SRR4302518.13897947/1‑101 (MQ=60)

                                                                                         GGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCAC             <  SRR4302518.5960757/101‑1 (MQ=60)

                                                                                         GGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCAC             >  SRR4302518.3438777/1‑101 (MQ=60)

                                                                                         GGCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCAC             >  SRR4302518.317449/1‑101 (MQ=60)

                                                                                          GCTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACC            <  SRR4302518.432458/101‑1 (MQ=60)

                                                                                           NNNCAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCG           <  SRR4302518.10250687/101‑1 (MQ=60)

                                                                                           NNNCAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCG           <  SRR4302518.11204909/101‑1 (MQ=60)

                                                                                           CTACAACATCGAAACACAGGACGGAGTTTTTCAGGGTAAGCAGAAATTCGCCGACGATTACAACCACGCTTATAACGAACGCGGGAAATTACAACTCACCT           >  SRR4302518.1864334/1‑101 (MQ=60)

                                                                                           CTACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCANNN           >  SRR4302518.7813940/1‑101 (MQ=60)

                                                                                            NNNAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGT          <  SRR4302518.11280037/101‑1 (MQ=60)

                                                                                             ACAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTT         >  SRR4302518.6371230/1‑101 (MQ=60)

                                                                                              NNNCATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTA        <  SRR4302518.8162612/101‑1 (MQ=60)

                                                                                              CAACATCGAAACCCAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTA        <  SRR4302518.6631395/101‑1 (MQ=60)

                                                                                              CAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTA        >  SRR4302518.5884573/1‑101 (MQ=60)

                                                                                              AAACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGNNN        >  SRR4302518.13712298/1‑101 (MQ=60)

                                                                                               AACATCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTAC       >  SRR4302518.2394925/1‑101 (MQ=60)

                                                                                                 CATCGAAACACAGGACGGAGTTATTCAGGTTACGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTC     <  SRR4302518.1976632/101‑1 (MQ=60)

                                                                                                  NNNGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCA    <  SRR4302518.12821727/101‑1 (MQ=60)

                                                                                                   TCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAG   <  SRR4302518.811305/101‑1 (MQ=60)

                                                                                                   TCGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATGACAACTCACCGTTACTNNN   >  SRR4302518.9043982/1‑101 (MQ=60)

                                                                                                   NNNAAACACAGGACGGAGTTATTCAGGTTAATCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAG   <  SRR4302518.13155658/101‑1 (MQ=60)

                                                                                                    NNNAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGC  <  SRR4302518.14334474/101‑1 (MQ=60)

                                                                                                    NNNAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGC  <  SRR4302518.14537846/101‑1 (MQ=60)

                                                                                                    CGAAACACAGGCCGGAGGTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGC  >  SRR4302518.3951074/1‑101 (MQ=60)

                                                                                                    CGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCNNN  >  SRR4302518.9274865/1‑101 (MQ=60)

                                                                                                    CGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGC  >  SRR4302518.6301477/1‑101 (MQ=60)

                                                                                                    CGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGC  <  SRR4302518.6587700/101‑1 (MQ=60)

AATCAGGCACGAATATTCAGTTAGTGGGTTACCGTTATTCGACCAGCGGATATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATTGAAACACAGGACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGC  >  NC_000913/4544070‑4544270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`