Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	709,321	A→G	I103M (ATA→ATG)	ybfN →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	709,321	0	A	G	100.0%	891.3 / NA	252	I103M (ATA→ATG)	ybfN	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (126/126); total (126/126)

Only 100 of 255 total aligned reads displayed.

CGTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTC  >  NC_000913/709231‑709410

cgTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCg                                                                                         <  2:2646616/93‑1 (MQ=255)

cgTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCg                                                                                         >  2:3983211/1‑93 (MQ=255)

 gTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATgcgc                                                                                        <  1:543786/93‑1 (MQ=255)

  tACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCa                                                                                       >  2:912272/1‑93 (MQ=255)

  tACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCa                                                                                       >  1:6129306/1‑93 (MQ=255)

  tACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCa                                                                                       >  2:1080083/1‑93 (MQ=255)

  tACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCa                                                                                       >  2:4727160/1‑93 (MQ=255)

   aCTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAg                                                                                      >  1:4883869/1‑93 (MQ=255)

    cTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGt                                                                                     <  2:2938587/93‑1 (MQ=255)

     tGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGta                                                                                    >  2:4624468/1‑93 (MQ=255)

      ggATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGACATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGtaa                                                                                   >  1:216224/1‑93 (MQ=255)

      ggATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGtaa                                                                                   >  2:3887543/1‑93 (MQ=255)

       gATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGtaat                                                                                  >  2:6268277/1‑93 (MQ=255)

       gATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGtaat                                                                                  <  2:4306948/93‑1 (MQ=255)

            tCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACaa                                                                             <  2:4052288/93‑1 (MQ=255)

            tCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACaa                                                                             >  1:299188/1‑93 (MQ=255)

            tCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACaa                                                                             >  1:3406892/1‑93 (MQ=255)

            tCAGCAGTGCCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACaa                                                                             >  1:4000367/1‑93 (MQ=255)

             cagcagTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACaaa                                                                            <  1:6337919/93‑1 (MQ=255)

             cagcagTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACaaa                                                                            >  2:6111782/1‑93 (MQ=255)

              agcagTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAAt                                                                           <  1:4474302/93‑1 (MQ=255)

                  gtgtCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGt                                                                       <  2:5120445/93‑1 (MQ=255)

                    gtCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTga                                                                     <  2:4438673/93‑1 (MQ=255)

                    gtCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTga                                                                     >  1:1735689/1‑93 (MQ=255)

                    gtCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTga                                                                     >  2:4520606/1‑93 (MQ=255)

                    gtCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTga                                                                     >  2:4814643/1‑93 (MQ=255)

                     tCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTgag                                                                    <  1:846366/93‑1 (MQ=255)

                      cTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTgaga                                                                   >  1:4559625/1‑93 (MQ=255)

                      cTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTgaga                                                                   >  1:4687413/1‑93 (MQ=255)

                           tGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGt                                                              <  1:2184236/93‑1 (MQ=255)

                            gCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTa                                                             <  2:1663160/93‑1 (MQ=255)

                            gCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTa                                                             <  1:4341619/93‑1 (MQ=255)

                            gCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTa                                                             <  1:1028494/93‑1 (MQ=255)

                              aaCGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAAc                                                           >  1:4600166/1‑93 (MQ=255)

                               aCGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAAct                                                          >  2:4969680/1‑93 (MQ=255)

                               aCGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAAct                                                          >  1:924180/1‑93 (MQ=255)

                                cGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAActc                                                         <  2:3703784/93‑1 (MQ=255)

                                cGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAActc                                                         <  1:5756189/93‑1 (MQ=255)

                                 gCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAActct                                                        >  1:6205111/1‑93 (MQ=255)

                                 gCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAActct                                                        <  2:1813946/93‑1 (MQ=255)

                                 gCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAActct                                                        <  2:2700790/93‑1 (MQ=255)

                                  cAAACCGGAGATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAtctctc                                                       <  1:120299/93‑1 (MQ=255)

                                  cAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACtctc                                                       <  1:6085697/93‑1 (MQ=255)

                                   aaaCCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCg                                                      >  2:6390692/1‑93 (MQ=255)

                                    aaCCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGc                                                     <  1:4924232/93‑1 (MQ=255)

                                      ccGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCtt                                                   <  1:1928528/93‑1 (MQ=255)

                                       cGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCttt                                                  <  1:563132/93‑1 (MQ=255)

                                        ggAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCtttt                                                 <  2:2161842/93‑1 (MQ=255)

                                         gAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTc                                                <  1:1088011/93‑1 (MQ=255)

                                         gAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTc                                                >  1:3561952/1‑93 (MQ=255)

                                          aaaTGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCt                                               <  1:1548036/93‑1 (MQ=255)

                                            aTGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTa                                             >  2:3280046/1‑93 (MQ=255)

                                             tGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTAt                                            <  2:3120509/93‑1 (MQ=255)

                                              gATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTAtt                                           <  1:4412991/93‑1 (MQ=255)

                                               aTCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTAttt                                          >  1:1451369/1‑93 (MQ=255)

                                               aTCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTAttt                                          <  1:4030097/93‑1 (MQ=255)

                                                tCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTc                                         <  2:2498616/93‑1 (MQ=255)

                                                tCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTc                                         >  2:1761515/1‑93 (MQ=255)

                                                tCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTc                                         <  1:3196166/93‑1 (MQ=255)

                                                  aGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTccc                                       <  2:5801100/93‑1 (MQ=255)

                                                  aGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTccc                                       <  2:4190486/93‑1 (MQ=255)

                                                   ggCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCt                                      >  2:6146022/1‑93 (MQ=255)

                                                   ggCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCt                                      >  2:3521931/1‑93 (MQ=255)

                                                    gCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCtt                                     <  1:5282896/93‑1 (MQ=255)

                                                      ggTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTACCTCTCTCTTTTCTTATTTCCCTTGc                                   <  1:5541875/93‑1 (MQ=255)

                                                      ggTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGc                                   <  2:4663004/93‑1 (MQ=255)

                                                       gTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCa                                  >  1:1198498/1‑93 (MQ=255)

                                                        tGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCAt                                 <  1:5028988/93‑1 (MQ=255)

                                                          aaaGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATaa                               >  1:1252821/1‑93 (MQ=255)

                                                           aaGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATaag                              >  1:276898/1‑92 (MQ=255)

                                                           aaGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATaaa                              <  1:5518646/93‑1 (MQ=255)

                                                            aGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATaaaa                             <  1:2823273/93‑1 (MQ=255)

                                                            aGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATaaaa                             >  2:2337111/1‑93 (MQ=255)

                                                            aGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATaaaa                             >  2:5854858/1‑93 (MQ=255)

                                                              ccGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATaaaaaa                           >  1:134793/1‑93 (MQ=255)

                                                               cGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAg                          >  2:3845866/1‑93 (MQ=255)

                                                                 aTTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGcc                        >  2:5664965/1‑93 (MQ=255)

                                                                 aTTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGcc                        <  2:3626177/93‑1 (MQ=255)

                                                                 aTTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGcc                        >  2:1223275/1‑93 (MQ=255)

                                                                   tgtgATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCaa                      <  1:1892798/93‑1 (MQ=255)

                                                                    gtgATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAAc                     <  1:3606489/93‑1 (MQ=255)

                                                                     tgATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAAcc                    >  1:4097283/1‑93 (MQ=255)

                                                                         aaaGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCa                >  2:204884/1‑93 (MQ=255)

                                                                         aaaGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCa                >  1:5956578/1‑93 (MQ=255)

                                                                           aGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAgg              >  1:5385446/1‑93 (MQ=255)

                                                                           aGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAgg              <  2:3355407/93‑1 (MQ=255)

                                                                           aGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAgg              >  2:3759946/1‑93 (MQ=255)

                                                                           aGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAgg              >  2:152317/1‑93 (MQ=255)

                                                                            gTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGt             <  1:3262770/93‑1 (MQ=255)

                                                                            gTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGt             <  2:1948767/93‑1 (MQ=255)

                                                                            gTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGt             >  1:6400579/1‑93 (MQ=255)

                                                                             tCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGtt            <  1:2480419/93‑1 (MQ=255)

                                                                              cTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTg           <  1:2938083/93‑1 (MQ=255)

                                                                              cTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTg           >  2:5451519/1‑93 (MQ=255)

                                                                                ggCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGc         >  2:5952095/1‑93 (MQ=255)

                                                                                ggCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGc         <  1:3806688/93‑1 (MQ=255)

                                                                                    ggAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCtttt     >  1:2600511/1‑93 (MQ=255)

                                                                                     gAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtc    <  1:5899912/93‑1 (MQ=255)

                                                                                       aaTGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtctc  <  1:499427/93‑1 (MQ=255)

                                                                                       aaTGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTtctc  <  1:448138/93‑1 (MQ=255)

CGTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTC  >  NC_000913/709231‑709410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGCGTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTC  >  NC_000913/709228‑709414

ACGCGTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATG                                                                                               <  SRR4302534.5456334/94‑1 (MQ=60)

 CGCGTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGC                                                                                              <  SRR4302534.4990760/94‑1 (MQ=60)

 CGCGTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGC                                                                                              <  SRR4302534.1739646/94‑1 (MQ=60)

  GCGTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCG                                                                                             <  SRR4302534.1283017/94‑1 (MQ=60)

    GTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCA                                                                                           >  SRR4302534.177936/1‑94 (MQ=60)

    GTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCA                                                                                           <  SRR4302534.557216/94‑1 (MQ=60)

    GTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCA                                                                                           >  SRR4302534.6296037/1‑94 (MQ=60)

     TACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAG                                                                                          >  SRR4302534.5016322/1‑94 (MQ=60)

     TACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAG                                                                                          <  SRR4302534.1240342/94‑1 (MQ=60)

        TGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGACATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAA                                                                                       >  SRR4302534.221889/1‑94 (MQ=60)

        TGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAA                                                                                       >  SRR4302534.1187456/1‑94 (MQ=60)

         GGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAAT                                                                                      >  SRR4302534.2830022/1‑94 (MQ=60)

         GGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAAT                                                                                      <  SRR4302534.564505/94‑1 (MQ=60)

             TATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACA                                                                                  <  SRR4302534.1231069/94‑1 (MQ=60)

             TATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACA                                                                                  >  SRR4302534.3007308/1‑94 (MQ=60)

              ATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAA                                                                                 <  SRR4302534.5536889/94‑1 (MQ=60)

              ATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAA                                                                                 >  SRR4302534.4616975/1‑94 (MQ=60)

              ATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAA                                                                                 <  SRR4302534.4708643/94‑1 (MQ=60)

              ATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAA                                                                                 >  SRR4302534.306915/1‑94 (MQ=60)

              ATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAA                                                                                 >  SRR4302534.3498382/1‑94 (MQ=60)

              ATCAGCAGTGCCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAA                                                                                 >  SRR4302534.4107451/1‑94 (MQ=60)

               TCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAA                                                                                >  SRR4302534.4451761/1‑94 (MQ=60)

                CAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAAT                                                                               <  SRR4302534.6509123/94‑1 (MQ=60)

                CAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAAT                                                                               >  SRR4302534.3659809/1‑94 (MQ=60)

                 AGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATA                                                                              >  SRR4302534.339014/1‑94 (MQ=60)

                 AGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATA                                                                              <  SRR4302534.4595339/94‑1 (MQ=60)

                 AGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATA                                                                              >  SRR4302534.6521848/1‑94 (MQ=60)

                 AGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATA                                                                              >  SRR4302534.5857089/1‑94 (MQ=60)

                  GCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAA                                                                             >  SRR4302534.1578482/1‑94 (MQ=60)

                   CAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAG                                                                            <  SRR4302534.4786074/94‑1 (MQ=60)

                   CAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAG                                                                            <  SRR4302534.541759/94‑1 (MQ=60)

                    AGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGT                                                                           >  SRR4302534.413000/1‑94 (MQ=60)

                    AGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGT                                                                           >  SRR4302534.632001/1‑94 (MQ=60)

                      TGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGA                                                                         >  SRR4302534.1780762/1‑94 (MQ=60)

                        TCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGA                                                                       <  SRR4302534.747863/94‑1 (MQ=60)

                        TCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGA                                                                       >  SRR4302534.4683244/1‑94 (MQ=60)

                        TCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGA                                                                       >  SRR4302534.4814648/1‑94 (MQ=60)

                        TCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGA                                                                       <  SRR4302534.867697/94‑1 (MQ=60)

                         CTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAG                                                                      <  SRR4302534.4599876/94‑1 (MQ=60)

                         CTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAG                                                                      >  SRR4302534.480562/1‑94 (MQ=60)

                           GCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCT                                                                    >  SRR4302534.5035799/1‑94 (MQ=60)

                            CGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTG                                                                   <  SRR4302534.5072573/94‑1 (MQ=60)

                              TGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTA                                                                 <  SRR4302534.2241978/94‑1 (MQ=60)

                               GCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAA                                                                <  SRR4302534.4458914/94‑1 (MQ=60)

                               GCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAA                                                                <  SRR4302534.1054986/94‑1 (MQ=60)

                                CAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAAC                                                               <  SRR4302534.4475626/94‑1 (MQ=60)

                                CAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAAC                                                               >  SRR4302534.5777509/1‑94 (MQ=60)

                                CAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAAC                                                               >  SRR4302534.4725020/1‑94 (MQ=60)

                                 AACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACT                                                              >  SRR4302534.4140337/1‑94 (MQ=60)

                                 AACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACT                                                              >  SRR4302534.3587179/1‑94 (MQ=60)

                                 AACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACT                                                              >  SRR4302534.947715/1‑94 (MQ=60)

                                 AACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACT                                                              <  SRR4302534.995484/94‑1 (MQ=60)

                                 AACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACT                                                              >  SRR4302534.2897623/1‑94 (MQ=60)

                                  ACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTC                                                             <  SRR4302534.1387900/94‑1 (MQ=60)

                                   CGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCT                                                            <  SRR4302534.1976298/94‑1 (MQ=60)

                                   CGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCT                                                            >  SRR4302534.6373832/1‑94 (MQ=60)

                                   CGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCT                                                            <  SRR4302534.6202231/94‑1 (MQ=60)

                                   CGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCT                                                            <  SRR4302534.524266/94‑1 (MQ=60)

                                   CGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCT                                                            <  SRR4302534.5912319/94‑1 (MQ=60)

                                   CGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCT                                                            >  SRR4302534.372062/1‑94 (MQ=60)

                                     CAAACCGGAGATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTATCTCTCG                                                          <  SRR4302534.123486/94‑1 (MQ=60)

                                     CAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCG                                                          <  SRR4302534.6251177/94‑1 (MQ=60)

                                     CAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCG                                                          >  SRR4302534.2185607/1‑94 (MQ=60)

                                     CAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCG                                                          >  SRR4302534.5490388/1‑94 (MQ=60)

                                      AAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTACCTCTCGT                                                         >  SRR4302534.1238597/1‑94 (MQ=60)

                                       AACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCT                                                        >  SRR4302534.4559589/1‑94 (MQ=60)

                                       AACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCT                                                        <  SRR4302534.5057683/94‑1 (MQ=60)

                                        ACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGACATGAGCAGTAATAATAAAGAAGTGAGCGGTGTAGATCTCGCTT                                                       >  SRR4302534.4235554/1‑94 (MQ=60)

                                         CCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTT                                                      <  SRR4302534.1452912/94‑1 (MQ=60)

                                         CCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTT                                                      <  SRR4302534.1978952/94‑1 (MQ=60)

                                         CCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTT                                                      >  SRR4302534.3071985/1‑94 (MQ=60)

                                         CCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTT                                                      <  SRR4302534.3644432/94‑1 (MQ=60)

                                          CGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTT                                                     <  SRR4302534.576981/94‑1 (MQ=60)

                                           GGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTC                                                    >  SRR4302534.3657778/1‑94 (MQ=60)

                                            GAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCT                                                   <  SRR4302534.2813126/94‑1 (MQ=60)

                                            GAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCT                                                   <  SRR4302534.1116310/94‑1 (MQ=60)

                                             GAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTT                                                  <  SRR4302534.3197461/94‑1 (MQ=60)

                                             AAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTT                                                  <  SRR4302534.1588605/94‑1 (MQ=60)

                                             AAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTT                                                  <  SRR4302534.6447344/94‑1 (MQ=60)

                                               ATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTAT                                                <  SRR4302534.5653602/94‑1 (MQ=60)

                                               ATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTAT                                                <  SRR4302534.2235621/94‑1 (MQ=60)

                                                TGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATT                                               >  SRR4302534.912912/1‑94 (MQ=60)

                                                TGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATT                                               <  SRR4302534.4594682/94‑1 (MQ=60)

                                                TGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATT                                               >  SRR4302534.4367801/1‑94 (MQ=60)

                                                 GATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTT                                              <  SRR4302534.4532113/94‑1 (MQ=60)

                                                 GATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTT                                              <  SRR4302534.333803/94‑1 (MQ=60)

                                                 GATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTT                                              >  SRR4302534.4595500/1‑94 (MQ=60)

                                                 GATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTT                                              <  SRR4302534.6337875/94‑1 (MQ=60)

                                                 GATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTT                                              <  SRR4302534.5154635/94‑1 (MQ=60)

                                                 GATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTT                                              >  SRR4302534.1489550/1‑94 (MQ=60)

                                                 GATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGCCAGGAAATTCGCAGTAATAACAAATGAGTGAGAGCTGGAACTCTCGCTTTTCTTATTT                                              >  SRR4302534.3276349/1‑94 (MQ=60)

                                                  ATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTC                                             <  SRR4302534.4138142/94‑1 (MQ=60)

                                                   TCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCC                                            >  SRR4302534.1376039/1‑94 (MQ=60)

                                                   TCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCC                                            <  SRR4302534.3280898/94‑1 (MQ=60)

                                                     AGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCT                                          >  SRR4302534.645710/1‑94 (MQ=60)

                                                      GGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTT                                         >  SRR4302534.6038168/1‑94 (MQ=60)

                                                       GCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTG                                        <  SRR4302534.3024595/94‑1 (MQ=60)

                                                       GCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTG                                        <  SRR4302534.4100366/94‑1 (MQ=60)

                                                       GCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTG                                        <  SRR4302534.5425529/94‑1 (MQ=60)

                                                         GGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTACCTCTCTCTTTTCTTATTTCCCTTGCA                                      <  SRR4302534.5691471/94‑1 (MQ=60)

                                                         GGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCA                                      >  SRR4302534.1230032/1‑94 (MQ=60)

                                                          GTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCAT                                     <  SRR4302534.244090/94‑1 (MQ=60)

                                                           TGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATA                                    <  SRR4302534.5164817/94‑1 (MQ=60)

                                                            GAAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAA                                   >  SRR4302534.1285839/1‑94 (MQ=60)

                                                             AAAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAG                                  >  SRR4302534.284065/1‑94 (MQ=60)

                                                              AAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAA                                 <  SRR4302534.5667555/94‑1 (MQ=60)

                                                              AAGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAA                                 >  SRR4302534.196288/1‑94 (MQ=60)

                                                               AGCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAA                                <  SRR4302534.2897496/94‑1 (MQ=60)

                                                                GCCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAA                               >  SRR4302534.138330/1‑94 (MQ=60)

                                                                 CCGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAG                              <  SRR4302534.5738005/94‑1 (MQ=60)

                                                                  CGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATACAAAAGC                             >  SRR4302534.3846202/1‑94 (MQ=60)

                                                                  CGATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGC                             >  SRR4302534.5339071/1‑94 (MQ=60)

                                                                    ATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCA                           <  SRR4302534.4127302/94‑1 (MQ=60)

                                                                    ATTGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCA                           <  SRR4302534.4998127/94‑1 (MQ=60)

                                                                      TGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAAC                         >  SRR4302534.2391818/1‑94 (MQ=60)

                                                                      TGTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAAC                         <  SRR4302534.1942160/94‑1 (MQ=60)

                                                                       GTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACC                        <  SRR4302534.3703474/94‑1 (MQ=60)

                                                                       GTGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACC                        >  SRR4302534.4207423/1‑94 (MQ=60)

                                                                        TGATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCC                       <  SRR4302534.3304334/94‑1 (MQ=60)

                                                                          ATAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGC                     >  SRR4302534.2897276/1‑94 (MQ=60)

                                                                           TAAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCA                    >  SRR4302534.6118317/1‑94 (MQ=60)

                                                                            AAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAG                   <  SRR4302534.19052/94‑1 (MQ=60)

                                                                            AAAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAG                   >  SRR4302534.2200559/1‑94 (MQ=60)

                                                                             AAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGG                  >  SRR4302534.5670967/1‑94 (MQ=60)

                                                                             AAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGG                  >  SRR4302534.5530502/1‑94 (MQ=60)

                                                                             AAGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGG                  <  SRR4302534.6293497/94‑1 (MQ=60)

                                                                              AGTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGT                 >  SRR4302534.6573405/1‑94 (MQ=60)

                                                                               GTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTT                <  SRR4302534.3349652/94‑1 (MQ=60)

                                                                               GTCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTT                <  SRR4302534.5057921/94‑1 (MQ=60)

                                                                                TCTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTG               <  SRR4302534.2546302/94‑1 (MQ=60)

                                                                                 CTGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGG              <  SRR4302534.3015194/94‑1 (MQ=60)

                                                                                  TGGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGC             >  SRR4302534.4684608/1‑94 (MQ=60)

                                                                                   GGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCT            <  SRR4302534.3908900/94‑1 (MQ=60)

                                                                                   GGCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCT            <  SRR4302534.1099882/94‑1 (MQ=60)

                                                                                    GCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTT           <  SRR4302534.6182961/94‑1 (MQ=60)

                                                                                    GCAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTT           <  SRR4302534.68930/94‑1 (MQ=60)

                                                                                     CAGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTT          <  SRR4302534.2563364/94‑1 (MQ=60)

                                                                                      AGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTT         >  SRR4302534.1761368/1‑94 (MQ=60)

                                                                                      AGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTT         >  SRR4302534.6014800/1‑94 (MQ=60)

                                                                                      AGGAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTT         >  SRR4302534.2669318/1‑94 (MQ=60)

                                                                                        GAAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCT       <  SRR4302534.6060106/94‑1 (MQ=60)

                                                                                         AAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATACAAAAGCCAACCCGCAGGTTGGCTTTTCTC      >  SRR4302534.1135678/1‑94 (MQ=60)

                                                                                         AAATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTC      >  SRR4302534.6074625/1‑94 (MQ=60)

                                                                                          AATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCG     <  SRR4302534.511866/94‑1 (MQ=60)

                                                                                          AATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCG     <  SRR4302534.459498/94‑1 (MQ=60)

                                                                                          AATGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCG     >  SRR4302534.391850/1‑94 (MQ=60)

                                                                                            TGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTT   >  SRR4302534.1009931/1‑94 (MQ=60)

                                                                                            TGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTT   <  SRR4302534.817876/94‑1 (MQ=60)

                                                                                            TGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTT   >  SRR4302534.2163534/1‑94 (MQ=60)

                                                                                            TGCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTT   >  SRR4302534.5726237/1‑94 (MQ=60)

                                                                                             GCGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTC  <  SRR4302534.5741147/94‑1 (MQ=60)

ACGCGTACTGGATTATCAGCAGTGTCTGCGTGCAACGCAAACCGGAAATGATCAGGCGGTGAAAGCCGATTGTGATAAAGTCTGGCAGGAAATACGCAGTAATAACAAATAAGTGAGAGCTGTAACTCTCGCTTTTCTTATTTCCCTTGCATAAAAAAGCCAACCCGCAGGTTGGCTTTTCTCGTTC  >  NC_000913/709228‑709414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`